Range-wide distribution of genetic diversity in the North American tree Juglans cinerea: A product of range shifts, not ecological marginality or recent population decline

Molecular Ecology

Volumn 19, Issue 22, 2010, Pages 4876-4891

  Hoban, Sean M ^a   Borkowski, Daniel S ^a   Brosi, Sunshine L ^b   McCleary, Tim S ^a   Thompson, Laura M ^c   McLachlan, Jason S ^a   Pereira, Marie A ^a   Schlarbaum, Scott E ^c   Romero Severson, Jeanne ^a  

^a UNIVERSITY OF NOTRE DAME   (United States)

^b FROSTBURG STATE UNIVERSITY   (United States)

^c UNIVERSITY OF TENNESSEE   (United States)

Author keywords

bottlenecks; butternut; climate change; genetic diversity; range shifts

Indexed keywords

ARTICLE; BAYES THEOREM; CLUSTER ANALYSIS; ECOLOGY; ECOSYSTEM; ENVIRONMENTAL PROTECTION; GENETIC VARIABILITY; GENETICS; GENOTYPE; POPULATION DYNAMICS; TREE; WALNUT;

BAYES THEOREM; CLUSTER ANALYSIS; CONSERVATION OF NATURAL RESOURCES; ECOLOGY; ECOSYSTEM; GENETIC VARIATION; GENOTYPE; JUGLANS; POPULATION DYNAMICS; TREES;

JUGLANS CINEREA;

EID: 78449283620     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/j.1365-294X.2010.04834.x     Document Type: Article

References (99)

1. Allendorf FW, Ryman N, (2002) The role of genetics in population viability analysis. In: Population Viability Analysis (eds, Beissinger SR, McCullough DR,), pp. 50-85, University of Chicago Press, Chicago.
2. Anderson RL, LeMadeleine LA, (1978) The distribution of butternut decline in the eastern United States. USDA, Forest Service, NE Area, State and Private Forestry Report S-3-78, 4.
3. Austerlitz F, Garnier-Gere PH, (2003) Modeling the impact of colonisation on genetic diversity and differentiation of forest trees: interaction of life cycle, pollen flow and seed long-distance dispersal. Heredity, 90, 282.
4. Bradbury IR, Bentzen P, (2007) Non-linear genetic isolation by distance: implications for dispersal estimation in anadromous and marine fish populations. Marine Ecology Progress Series, 340, 245-257.
5. Brown JW, Groot PJVCD, Birt TP, etal. (2007) Appraisal of the consequences of the DDT-induced bottleneck on the level and geographic distribution of neutral genetic variation in Canadian peregrine falcons, Falco peregrinus. Molecular Ecology, 16, 327-343.
6. Cassel A, Tammaru T, (2003) Allozyme variability in central, peripheral and isolated populations of the scarce heath (Coenonympha hero: Lepidoptera, Nymphalidae); implications for conservation. Conservation Genetics, 4, 83-93.
7. Clark JS, (1998) Why trees migrate so fast: confronting theory with dispersal biology and the paleorecord. The American Naturalist, 152, 204-224.
8. Coggeshall MV, (1997) The Indiana Butternut Survey-an update. 88th Annual Report of the Northern Nut Growers Association, 88, 3-5.
9. Corander J, Waldmann P, Sillanpaa MJ, (2003) Bayesian analysis of genetic differentiation between populations. Genetics, 163, 367-374.
10. Craft KJ, Ashley MV, (2007) Landscape genetic structure of bur oak (Quercus macrocarpa) savannas in Illinois. Forest Ecology and Management, 239, 13-20.
11. Davis MB, (1983) Quaternary history of deciduous forests of Eastern North America and Europe. Annals of the Missouri Botanical Garden, 70, 550-563.
12. Eckert CG, Samis KE, Lougheed SC, (2008) Genetic variation across species' geographical ranges: the central-marginal hypothesis and beyond. Molecular Ecology, 17, 1170-1188.
13. England PR, Osler GHR, Woodworth LM, etal. (2003) Effects of intense versus diffuse population bottlenecks on microsatellite genetic diversity and evolutionary potential. Conservation Genetics, 4, 595-604.
14. ESRI (2004) ARCINFO, Environmental Systems Research Inc., Redlands, California.
15. Evanno G, Regnaut S, Goudet J, (2005) Detecting the number of clusters of individuals using the software structure: a simulation study. Molecular Ecology, 14, 2611-2620.
16. Excoffier L, Laval G, Schneider S, (2005) Arlequin ver. 3.0: an integrated software package for population genetics data analysis. Evolutionary Bioinformatics Online, 1, 47-50.
17. Excoffier L, Foll M, Petit R, (2009) Genetic consequences of range expansions. Annual Review of Ecology, Evolution, and Systematics, 40, 481-501.
18. Fernández-M. JF, Sork VL, (2007) Genetic variation in fragmented forest stands of the Andean Oak Quercus humboldtii Bonpl. (Fagaceae). Biotropica, 39, 72-78.
19. Foll M, Gaggiotti O, (2006) Identifying the environmental factors that determine the genetic structure of populations. Genetics, 174, 875-891.
20. Fralish JS, (2002) The central hardwood forest: its boundaries and physiographic provinces. In: 13th Central Hardwood Forest Conference (eds, Van Sambeek JW, Dawson JO, Ponder F Jr, Loewenstein EF, Fralish JS,), pp. 1-20, USDA: Forest Service, Urbana, IL.
21. Frankham R, (1995) Conservation genetics. Annual Review of Genetics, 29, 305-327.
22. Frankham R, (2005) Genetics and extinction. Biological Conservation, 126, 131-140.
23. Fraser DJ, Bernatchez L, (2001) Adaptive evolutionary con-servation: towards a unified concept for defining conserva-tion units. Molecular Ecology, 10, 2741-2752.
24. Gaggiotti OE, Bekkevold D, Jørgensen HBH, etal. (2009) Disentangling the effects of evolutionary, demographic, and environmental factors influencing genetic structure of natural populations: Atlantic herring as a case study. Evolution, 63, 2939-2951.
25. Gamache I, Jaramillo-Correa JP, Payette S, Bousquet J, (2003) Diverging patterns of mitochondrial and nuclear DNA diversity in subarctic black spruce: imprint of a founder effect associated with postglacial colonization. Molecular Ecology, 12, 891-901.
26. Gapare WJ, Aitken SN, Ritland CE, (2005) Genetic diversity of core and peripheral Sitka spruce (Picea sitchensis (Bong.) Carr) populations: implications for conservation of widespread species. Biological Conservation, 123, 113-123.
27. Garza JC, Williamson EG, (2001) Detection of reduction in population size using data from microsatellite loci. Molecular Ecology, 10, 305-318.
28. Gaston KJ, (1996) Species-range-size distributions: patterns, mechanisms and implications. Trends in Ecology & Evolution, 11, 197-201.
29. Goudet J, (1995) Fstat: a computer program to calculate F-statistics. Journal of Heredity, 86, 485-486.
30. Grivet D, Sork VL, Westfall RD, Davis FW, (2008) Conserving the evolutionary potential of California valley oak (Quercus lobata): a multivariate genetic approach to conservation planning. Molecular Ecology, 17, 139-156.
31. Hamrick JL, (2004) Response of forest trees to global environmental changes. Forest Ecology and Management, 197, 323-335.
32. Hardy OJ, Vekemans X, (2002) SPAGeDi: a versatile computer program to analyse spatial genetic structure at the individual or population levels. Molecular Ecology Notes, 2, 618-620.
33. Henry P, Miquelle D, Sugimoto T, etal. (2009) In situ population structure and ex situ representation of the endangered Amur tiger. Molecular Ecology, 18, 3173-3184.
34. Heuertz M, Hausman J-F, Hardy OJ, etal. (2004) Nuclear microsatellites reveal contrasting patterns of genetic structure between western and southeastern European populations of the common ash (Fraxinus excelsior L.). Evolution, 58, 976-988.
35. Hewitt G, (2000) The genetic legacy of the Quaternary ice ages. Nature, 405, 907-913.
36. Hoban S, Anderson R, Mccleary T, Schlarbaum S, Romero-Severson J, (2008) Thirteen nuclear microsatellite loci for butternut (Juglans cinerea L.). Molecular Ecology Resources, 8, 643-646.
37. Hoban S, McCleary T, Schlarbaum S, Romero-Severson J, (2009) Geographically extensive hybridization between the forest trees American butternut and Japanese walnut. Biology Letters, 5, 324-327.
38. Holm S, (1979) A simple sequentially rejective multiple test procedure. Scandinavian Journal of Statistics, 6, 65-70.
39. Hopkin A, Innes L, Harrison K, (2001) Distribution of butternut canker (Sirococcus clavigignenti-juglandacearum) in Eastern Canada. Frontline Express, Bulletin No. 2. Canadian Forest Service, Great Lakes Forestry Centre, Saul Ste. Marie, ON.
40. Hutchison DW, (2003) Testing the central/peripheral model: analyses of microsatellite variability in the Eastern Collared Lizard (Crotaphytus collaris). American Midland Naturalist, 149, 148-162.
41. Hutchison DW, Templeton AR, (1999) Correlation of pairwise genetic and geographic distance measures: inferring the relative influences of gene flow and drift on the distribution of genetic variability. Evolution, 53, 1898-1914.
42. Jackson ST, Webb RS, Anderson KH, et al., (2000) Vegetation and environment in Eastern North America during the Last Glacial Maximum. Quaternary Science Reviews, 19, 489-508.
43. Jaramillo-Correa JP, Beaulieu J, Khasa DP, Bousquet J, (2009) Inferring the past from the present phylogeographic structure of North American forest trees: seeing the forest for the genes. Canadian Journal of Forest Research, 39, 286-307.
44. Johansson M, Primmer CR, Merila J, (2006) History vs. current demography: explaining the genetic population structure of the common frog (Rana temporaria). Molecular Ecology, 15, 975-983.
45. Jordan M, Morris D, Gibson S, (2008) The influence of historical landscape change on genetic variation and population structure of a terrestrial salamander (Plethodon cinereus). Conservation Genetics, 10, 1647-1658.
46. Jump AS, Penuelas J, (2006) Genetic effects of chronic habitat fragmentation in a wind-pollinated tree. PNAS, 103, 8096-8100.
47. Kimura M, Weiss GH, (1964) The stepping stone model of population structure and the decrease of genetic correlation with distance. Genetics, 49, 561-576.
48. Lawton JH, (1993) Range, population abundance, and conservation. Trends in Ecology and Evolution, 8, 409-413.
49. Ledig FT, (1988) The conservation of diversity in forest trees: why and how should genes be conserved- BioScience, 38, 471-479.
50. Lesica P, Allendorf FW, (1995) When are peripheral populations valuable for conservation- Conservation Biology, 9, 753-760.
51. Lewis PO, Zaykin D, (2001) Genetic Data Analysis: Computer Program for the Analysis of Allelic Data, Version 1.0. (d15). University of Connecticut, Storrs, Connecticut.
52. Little EL Jr,. (1971) Atlas of United States trees, volume 1, conifers and important hardwoods: UDA Miscellaneous Publication 1146, 9 p., 200 maps.
53. Lönn M, Prentice HC, (2002) Gene diversity and demographic turnover in central and peripheral populations of the perennial herb Gypsophila fastigiata. Oikos, 99, 489-498.
54. Loveless MD, Hamrick JL, (1984) Ecological determinants of genetic structure in plant populations. Annual Review of Ecology and Systematics, 15, 65-95.
55. Luikart G, Cornuet J-M, (1998) Empirical evaluation of a test for identifying recently bottlenecked populations from allele frequency data. Conservation Biology, 12, 228-237.
56. Luikart G, Allendorf FW, Cornuet J-M, Sherwin WB, (1998) Distortion of allele frequency distributions provides a test for recent population bottlenecks. Journal of Heredity, 89, 238-247.
57. Magni CR, Ducousso A, Caron H, Petit RJ, Kremer A, (2005) Chloroplast DNA variation of Quercus rubra L. in North American and comparison with other Fagaceae. Molecular Ecology, 14, 513-524.
58. Marsico TD, Hellmann JJ, Romero-Severson J, (2009) Patterns of seed dispersal and pollen flow in Quercus garryana (Fagaceae) following post-glacial climatic changes. Journal of Biogeography, 36, 929-941.
59. Maruyama T, Kimura M, (1980) Genetic variability and effective population size when local extinction and recolonization of subpopulations are frequent. PNAS, 77, 6710-6714.
60. McCleary T, Robichaud R, Nuanes S, etal. (2009) Four cleaved amplified polymorphic sequence markers for the detection of the Juglans ailantifolia chloroplast in putatively native J. cinerea populations. Molecular Ecology Resources, 9, 525-527.
61. McDaniel JC, (1979) Other walnut including butternuts, heartnuts and hybrids. In: Nut Tree Culture in North America (ed, Jaynes RA,), pp. 98-127, Northern Nut Growers Association, Hamden, CT.
62. Morin R, Beaulieu J, Deslauriers M, Daoust G, Bousquet J, (2000) Low genetic diversity at allozyme loci in Juglans cinerea. Canadian Journal of Botany, 78, 1238-1243.
63. Nielsen C, Cherry M, Boysen B, etal. (2003) COSEWIC Status Report on the Butternut Juglans cinerea in Canada. Committee on the Status of Endangered Wildlife in Canada, Ottawa Canada.
64. Okello JBA, Wittemyer G, Rasmussen HB, etal. (2008) Effective population size dynamics reveal impacts of historic climatic events and recent anthropogenic pressure in African elephants. Molecular Ecology, 17, 3788-3799.
65. Orchard LP, (1984) Butternut Canker: Host Range, Disease Resistance, Seedling-Disease Reactions and Seed-Borne Trans-mission. PhD Diss., University of Wisconsin.
66. Ostry M, Woeste K, (2004) Spread of butternut canker in North America, host range, evidence of resistance within butternut populations and conservation genetics. Black walnut in a new century, proceedings of the 6th Walnut Council research symposium. USDA Forest Service General Technical Report NC-243.
67. Peakall R, Smouse PE, (2006) GenAlEx 6: genetic analysis in Excel. Population genetic software for teaching and research. Molecular Ecology Notes, 6, 288-295.
68. Pearson RG, (2006) Climate change and the migration capacity of species. Trends in Ecology and Evolution, 21, 111-113.
69. Petit RJ, El Mousadik A, Pons O, (1998) Identifying populations for conservation on the basis of genetic markers. Conservation Biology, 12, 844-855.
70. Petit RJ, Aguinagalde I, De Beaulieu J-L, etal. (2003) Glacial refugia: hotspots but not melting pots of genetic diversity. Science, 300, 1563-1565.
71. Petit RJ, Bialozyt R, Garnier-Gere P, Hampe A, (2004) Ecology and genetics of tree invasions: from recent introductions to Quaternary migrations. Forest Ecology and Management, 197, 117-137.
72. Petit RJ, Hu FS, Dick CW, (2008) Forests of the past: a window to future changes. Science, 320, 1450-1452.
73. Pielou EC, (1992) After the Ice Age: The Return of Life to Unglaciated North America. Oxford University Press, Chicago.
74. Pritchard JK, Stephens M, Donnelly P, (2000) Inference of population structure using multilocus genotype data. Genetics, 155, 945-959.
75. Purves DW, (2009) The demography of range boundaries versus range cores in eastern US tree species. Proceedings of the Royal Society B: Biological Sciences, 276, 1477-1484.
76. Raymond M, Rousset F, (1995) GENEPOP (version 1.2): population genetics software for exact tests. Journal of Heredity, 86, 248-249.
77. R-CDT (2005) R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, Vienna, Austria.
78. Rink G, (1990) Juglans cinerea L. Butternut. In: Silvics of North America. Vol 2. Hardwoods. Agriculture Handbook 654 (eds, Burns RM, Honkala BH,), pp. 386-390. U.S. Forest Service, Washington, DC.
79. Robichaud R, Glaubitz J, Rhodes O, Woeste K, (2006) A robust set of black walnut microsatellites for parentage and clonal identification. New Forests, 32, 179-196.
80. Ross-Davis A, Ostry M, Woeste KE, (2008) Genetic diversity of butternut (Juglans cinerea) and implications for conservation. Canadian Journal of Forest Research, 38, 899-907.
81. Rousset F, (1997) Genetic differentiation and estimation of gene flow from F-statistics under isolation-by-distance. Genetics, 145, 1219-1228.
82. Sagarin RD, Gaines SD, (2002) The 'abundant centre' distribution: to what extent is it a biogeographical rule- Ecology Letters, 5, 137-147.
83. Sagarin RD, Gaines SD, Gaylord B, (2006) Moving beyond assumptions to understand abundance distributions across the ranges of species. Trends in Ecology and Evolution, 21, 524-530.
84. Schlarbaum SE, Hebard F, Spaine PC, Kamalay JC, (1997) Three American tragedies: chestnut blight, butternut canker, and Dutch elm disease. In: Proceedings, Exotic Pests of Eastern Forests (ed, Britton KO,), pp. 45-54, Tennessee Exotic Pest Plant Council, Nashville, TN.
85. Schmalz T, Bergdahl D, (2006) Impact of Sirococcus claviginenti- juglandacearum on health of butternut. Phytopathology, 96, S182.
86. Schwartz MK, Mills LS, Ortega Y, Ruggiero LF, Allendorf FW, (2003) Landscape location affects genetic variation of Canada lynx (Lynx canadensis). Molecular Ecology, 12, 1807-1816.
87. Segelbacher G, Höglund J, Storch I, (2003) From connectivity to isolation: genetic consequences of population fragmentation in capercaillie across Europe. Molecular Ecology, 12, 1773-1780.
88. Slatkin M, (1993) Isolation by distance in equilibrium and non-equilibrium populations. Evolution, 47, 264-279.
89. Smulders MJM, Cottrell JE, Lefèvre F, etal. (2008) Structure of the genetic diversity in black poplar (Populus nigra L.) populations across European river systems: consequences for conservation and restoration. Forest Ecology and Management, 255, 1388-1399.
90. Soltis DE, Morris AB, McLachlan JS, Manos PS, Soltis PS, (2006) Comparative phylogeography of unglaciated eastern North America. Molecular Ecology, 15, 4261-4293.
91. Stockwell CA, Hendry AP, Kinnison MT, (2003) Contemporary evolution meets conservation biology. Trends in Ecology and Evolution, 18, 94-101.
92. Van Oosterhout C, Hutchinson WF, Wills DPM, Shipley P, (2004) Micro-Checker: software for identifying and correcting genotyping errors in microsatellite data. Molecular Ecology Notes, 4, 535-538.
93. Vellend M, (2004) Parallel effects of land-use history on species diversity and genetic diversity of forest herbs. Ecology, 85, 3043-3055.
94. Vendramin GG, Fady B, González-Martínez SC, etal. (2008) Genetically depauperate but widespread: the case of an emblematic Mediterranean pine. Evolution, 62, 680-688.
95. Victory ER, Glaubitz JC, Rhodes OE Jr, Woeste KE, (2006) Genetic homogeneity in Juglans nigra (Juglandaceae) at nuclear microsatellites. American Journal of Botany, 93, 118-126.
96. Weir BS, Cockerham CC, (1984) Estimating F-statistics for the analysis of population structure. Evolution, 38, 1358-1370.
97. Williamson-Natesan E, (2005) Comparison of methods for detecting bottlenecks from microsatellite loci. Conservation Genetics, 6, 551-562.
98. Yao X, Ye Q, Kang M, Huang H, (2007) Microsatellite analysis reveals interpopulation differentiation and gene flow in the endangered tree Changiostyrax dolichocarpa with fragmented distribution in central China. New Phytologist, 176, 472-480.
99. Zellmer AJ, Knowles LL, (2009) Disentangling the effects of historic vs. contemporary landscape structure on population genetic divergence. Molecular Ecology, 18, 3593-3602.