Label-free voltammetric detection using individually addressable oligonucleotide microelectrode arrays

Analytical Chemistry

Volumn 82, Issue 21, 2010, Pages 9028-9033

  Kalantari, Roya ^a   Cantor, Ryan ^a   Chen, Hang ^a   Yu, George ^a   Janata, Jiri ^a   Josowicz, Mira ^a  

^a GEORGIA INSTITUTE OF TECHNOLOGY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

18S RRNA; CANDIDA ALBICANS; DETECTION SIGNAL; ESCHERICHIA COLI O157; LABEL FREE; MICROELECTRODE ARRAY; MULTI-STEP; OLIGONUCLEOTIDE PROBES; PHOSPHONATES; POLYPYRROLE FILM; REAGENT-LESS; SELECTION STRATEGIES; SPECIFIC BINDING; SPECIFIC INTERACTION; TARGET ANALYTES; VOLTAMMETRIC; VOLTAMMETRIC DETECTION;

ACIDS; ESCHERICHIA COLI; MICROELECTRODES; OLIGONUCLEOTIDES; POLYPYRROLES; PROBES; RNA; SURFACE DEFECTS;

SIGNAL DETECTION;

BACTERIAL RNA; FUNGAL RNA;

ARTICLE; CANDIDA ALBICANS; CANDIDIASIS; CHEMISTRY; DNA MICROARRAY; EQUIPMENT; EQUIPMENT DESIGN; ESCHERICHIA COLI INFECTION; ESCHERICHIA COLI O157; GENETICS; HUMAN; ISOLATION AND PURIFICATION; MICROBIOLOGY; MICROELECTRODE; OLIGONUCLEOTIDE PROBE;

CANDIDA ALBICANS; CANDIDIASIS; EQUIPMENT DESIGN; ESCHERICHIA COLI INFECTIONS; ESCHERICHIA COLI O157; HUMANS; MICROELECTRODES; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; OLIGONUCLEOTIDE PROBES; RNA, BACTERIAL; RNA, FUNGAL;

EID: 78049501142     PISSN: 00032700     EISSN: None     Source Type: Journal    
DOI: 10.1021/ac102002k     Document Type: Article

References (45)

1. Lewis, E. K., Haaland, W. C., Nguyen, F., Heller, D. A., Allen, M. J., MacGregor, R. R., Berger, C. S., Willingham, B., Burns, L. A., Scott, G. B. I., Kittrell, C., Johnson, B. R., Curl, R. F., and Metzker, M. L. Proc. Natl. Acad. Sci. U.S.A. 2005, 102 (15) 5346-5351
2. Ozsolak, F., Platt, A. R., Jones, D. R., Reifenberger, J. G., Sass, L. E., McInerney, P., Thompson, J. F., Bowers, J., Jarosz, M., and Milos, P. M. Nature 2009, 461 (7265) 814-U73
3. Meller, A., Nivon, L., Brandin, E., Golovchenko, J., and Branton, D. Proc. Natl. Acad. Sci. U.S.A. 2000, 97 (3) 1079-1084
4. Margulies, M., Egholm, M., Altman, W. E., Attiya, S., Bader, J. S., Bemben, L. A., Berka, J., Braverman, M. S., Chen, Y. J., Chen, Z. T., Dewell, S. B., Du, L., Fierro, J. M., Gomes, X. V., Godwin, B. C., He, W., Helgesen, S., Ho, C. H., Irzyk, G. P., Jando, S. C., Alenquer, M. L. I., Jarvie, T. P., Jirage, K. B., Kim, J. B., Knight, J. R., Lanza, J. R., Leamon, J. H., Lefkowitz, S. M., Lei, M., Li, J., Lohman, K. L., Lu, H., Makhijani, V. B., McDade, K. E., McKenna, M. P., Myers, E. W., Nickerson, E., Nobile, J. R., Plant, R., Puc, B. P., Ronan, M. T., Roth, G. T., Sarkis, G. J., Simons, J. F., Simpson, J. W., Srinivasan, M., Tartaro, K. R., Tomasz, A., Vogt, K. A., Volkmer, G. A., Wang, S. H., Wang, Y., Weiner, M. P., Yu, P. G., Begley, R. F., and Rothberg, J. M. Nature 2005, 437 (7057) 376-380
5. Shendure, J., Porreca, G. J., Reppas, N. B., Lin, X. X., McCutcheon, J. P., Rosenbaum, A. M., Wang, M. D., Zhang, K., Mitra, R. D., and Church, G. M. Science 2005, 309 (5741) 1728-1732
6. Tyagi, S. and Kramer, F. R. Nat. Biotechnol. 1996, 14 (3) 303-308
7. Nelson, N. C., BenCheikh, A., Matsuda, E., and Becker, M. M. Biochemistry 1996, 35 (25) 8429-8438
8. Storhoff, J. J., Lucas, A. D., Garimella, V., Bao, Y. P., and Muller, U. R. Nat. Biotechnol. 2004, 22 (7) 883-887
9. Gaylord, B. S., Heeger, A. J., and Bazan, G. C. Proc. Natl. Acad. Sci. U.S.A. 2002, 99 (17) 10954-10957
10. Brown, R. C., Li, Z., Rutter, A. J., Mu, X., Weeks, O. H., Smith, K., and Weeks, I. Org. Biomol. Chem. 2009, 7 (2) 386-394
11. Southern, E. M. J. Mol. Biol. 1975, 98 (3) 503.
12. Lockhart, D. J., Dong, H. L., Byrne, M. C., Follettie, M. T., Gallo, M. V., Chee, M. S., Mittmann, M., Wang, C. W., Kobayashi, M., Horton, H., and Brown, E. L. Nat. Biotechnol. 1996, 14 (13) 1675-1680
13. Fulton, R. J., McDade, R. L., Smith, P. L., Kienker, L. J., and Kettman, J. R. Clin. Chem. 1997, 43 (9) 1749-1756
14. Gunderson, K. L., Steemers, F. J., Lee, G., Mendoza, L. G., and Chee, M. S. Nat. Genet. 2005, 37 (5) 549-554
15. Wang, J. Anal. Chim. Acta 2002, 469 (1) 63-71
16. Rivas, G. A., Pedano, M. L., and Ferreyra, N. F. Anal. Lett. 2005, 38 (15) 2653-2703
17. Hvastkovs, E. G. and Buttry, D. A. Analyst 2010, 135 (8) 1817-1829
18. Sassolas, A., Leca-Bouvier, B. D., and Blum, L. J. Chem. Rev. 2008, 108 (1) 109-139
19. Ratilainen, T., Lincoln, P., and Norden, B. Biophys. J. 2001, 81 (5) 2876-2885
20. He, W., Yang, Q. J., Liu, Z. H., Yu, X. B., and Xu, D. K. Anal. Lett. 2005, 38 (15) 2567-2578
21. Pejcic, B., De Marco, R., and Parkinson, G. Analyst 2006, 131 (10) 1079-1090
22. Palecek, E., Scheller, F., and Wang, J. Electrochemistry of Nucleic Acids and Proteins: Towards Electrochemical Sensors for Genomic and Proteomics; Elsevier: Amsterdam, 2005; Vol. 1, p 789.
23. Batchelor-McAuley, C., Wildgoose, G. G., and Compton, R. G. Biosens. Bioelectron. 2009, 24 (11) 3183-3190
24. Palecek, E. Electroanalysis 2009, 21 (3-5) 239-251
25. Wei, F., Lillehoj, P. B., and Ho, C. M. Pediatr. Res. 2010, 67 (5) 458-468
26. Luo, X. T. and Hsing, I. M. Analyst 2009, 134 (10) 1957-1964
27. Vainrub, A. and Pettitt, B. M. Chem. Phys. Lett. 2000, 323 (1-2) 160-166
28. Halperin, A., Buhot, A., and Zhulina, E. B. J. Phys.: Condens. Matter 2006, 18 (18) S463-S490
29. Peng, H., Zhang, L. J., Soeller, C., and Travas-Sejdic, J. Biomaterials 2009, 30 (11) 2132-2148
30. Thompson, L. A., Kowalik, J., Josowicz, M., and Janata, J. J. Am. Chem. Soc. 2003, 125 (2) 324-325
31. Aiyejorun, T., Kowalik, J., Janata, J., and Josowicz, M. J. Chem. Educ. 2006, 83 (8) 1208-1211
32. Hartung, J., Kowalik, J., Kranz, C., Janata, J., Josowicz, M., Sinha, A., and McCoy, K. J. Electrochem. Soc. 2005, 152 (11 E345-E350
33. Ramanavicius, A., Ramanaviciene, A., and Malinauskas, A. Electrochim. Acta 2006, 51 (27) 6025-6037
34. Genies, E. M., Marchesiello, M., and Bidan, G. Electrochim. Acta 1992, 37 (6) 1015-1020
35. Riccardi, C. D., Yamanaka, H., Josowicz, M., Kowalik, J., Mizaikoff, B., and Kranz, C. Anal. Chem. 2006, 78 (4) 1139-1145
36. Riccardi, C. D. S., Kranz, C., Kowalik, J., Yamanaka, H., Mizaikoff, B., and Josowicz, M. Anal. Chem. 2008, 80 (1) 237-245
37. Lubin, A. A., Hunt, B. V. S., White, R. J., and Plaxco, K. W. Anal. Chem. 2009, 81 (6) 2150-2158
38. Gong, P. and Levicky, R. Proc. Natl. Acad. Sci. U.S.A. 2008, 105 (14) 5301-5306
39. Bishop, J., Chagovetz, A. M., and Blair, S. Biophys. J. 2008, 94 (5) 1726-1734
40. Gooding, J. J. Electroanalysis 2002, 14 (17) 1149-1156
41. Barone, V., Cacelli, I., Ferretti, A., Monti, S., and Prampolini, G. Phys. Chem. Chem. Phys. 2009, 11 (45) 10644-10656
42. Hagan, M. F. and Chakraborty, A. K. J. Chem. Phys. 2004, 120 (10) 4958-4968
43. Browne, K. A. J. Am. Chem. Soc. 2005, 127 (6) 1989-1994
44. Hogan, J. J. Polynucleotide Matrix-Based Method of Identifying Microorganisms. US Patent 6.821,770, 2004.
45. Wetmur, J. G. Crit. Rev. Biochem. Mol. Biol. 1991, 26 (3-4) 227-259