Label-free DNA detection of hepatitis C virus based on modified conducting polypyrrole films at microelectrodes and atomic force microscopy tip-integrated electrodes

Analytical Chemistry

Volumn 80, Issue 1, 2008, Pages 237-245

  Riccardi, Carla Dos Santos ^a   Kranz, Christine ^a   Kowalik, Janusz ^a   Yamanaka, Hideko ^b   Mizaikoff, Boris ^a   Josowicz, Mira ^a  

^a GEORGIA INSTITUTE OF TECHNOLOGY   (United States)

^b SÃO PAULO STATE UNIVERSITY UNESP   (Brazil)

Author keywords

[No Author keywords available]

Indexed keywords

ATOMIC FORCE MICROSCOPY; BIOSENSORS; MICROELECTRODES; POLYMER FILMS; POLYPYRROLES; VIRUSES;

ELECTROSTATIC MODULATION; POLYMERASE CHAIN REACTIONS;

DNA;

COMPLEMENTARY DNA; POLYPYRROLE; PYRROLE DERIVATIVE; VIRUS DNA; VIRUS RNA; POLYCARBONATE; POLYCARBOXYLATE CEMENT; POLYMER;

ARTICLE; ATOMIC FORCE MICROSCOPY; BASE MISPAIRING; BIOSENSOR; DNA HYBRIDIZATION; DNA PROBE; DNA SEQUENCE; ELECTRICITY; ELECTROCHEMISTRY; ELECTRONICS; EXPERIMENTAL STUDY; FILM; GENE AMPLIFICATION; GENETIC PROCEDURES; GENOTYPE; HEPATITIS C VIRUS; ION EXCHANGE; KINETICS; MICROELECTRODE; MODULATION; MONITORING; NONHUMAN; POLYMERIZATION; REPRODUCIBILITY; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SENSOR; ARTIFICIAL MEMBRANE; CHEMISTRY; GENETICS; HUMAN; INSTRUMENTATION; ISOLATION AND PURIFICATION; METHODOLOGY; NUCLEIC ACID HYBRIDIZATION; NUCLEOTIDE SEQUENCE; POROSITY; SENSITIVITY AND SPECIFICITY;

BASE SEQUENCE; BIOSENSING TECHNIQUES; DNA PROBES; HEPACIVIRUS; HUMANS; ION EXCHANGE; MEMBRANES, ARTIFICIAL; MICROELECTRODES; MICROSCOPY, ATOMIC FORCE; NUCLEIC ACID HYBRIDIZATION; POLYCARBOXYLATE CEMENT; POLYMERS; POROSITY; PYRROLES; REPRODUCIBILITY OF RESULTS; SENSITIVITY AND SPECIFICITY;

EID: 41149178766     PISSN: 00032700     EISSN: None     Source Type: Journal    
DOI: 10.1021/ac701613t     Document Type: Article

References (51)

1. Touzet, S.; Kraemer, L.; Colin, C.; Pradat, P.; Lanoir, D.; Bailly, F.; Coppola, R. C.; Sauleda, S.; Thursz, M. R.; Tillmann, H.; Alberti, A.; Braconier, J. H.; Esteban, J. I.; Hadziyannis, S. J.; Manns, M. P.; Saracco, G.; Thomas, H. C.; Trepo, C. Eur. J. Gastroenterol. Hepatol. 2000, 12, 667-678.
2. Hofmann, W. P.; Dries, V.; Herrmann, E.; Gartner, B.; Zeuzem, S.; Sarrazin, C. J. Clin. Virol. 2005, 32, 289-293.
3. WHO Consultation. J. Viral Hepatol. 1999, 6, 35-47.
4. Simmonds, P.; Alberti, A.; Alter, H. J.; Bonino, F.; Bradley, D. W.; Brechot, C.; Brouwer, J. T.; Chan, S. W.; Chayama, K.; Chen, D. S.; et al. Hepatology 1994, 19, 1321-1324.
5. Consensus Statement. J. Hepatol. 1999, 30, 956-961.
6. (a) Erensoy, S. J. Clin. Virol. 2001, 21, 271-281.
7. (b) Novati, R.; Thiers, V.; Monforte, A.; Maisonneuve, P.; Principi, N.; Conti, M.; Lazzarin, A.; Brechot, C. J. Infect. Dis. 1992, 165, 720-723.
8. (c) Hollingsworth, R. C.; Sillekens, P.; VanDeursen, P.; Neal, K. R.; Irving, W. L. J. Hepatol. 1996, 25, 301-306.
9. (d) Damen, M.; Sillekens, P.; Cuypers, H. T. M.; Frentzen, I.; Melsert, R. J. Virol. Methods 1999, 82, 45.
10. (e) Lee, S. C.; Antony, A.; Lee, N.; Leibow, J.; Yang, Q. J.; Soviero, S.; Gutekunst, K.; Rosenstraus, M. J. Clin. Microbiol. 2000, 38, 4171-4179.
11. Guichon, A.; Chiaprelli, H.; Martinez, A.; Rodrigues, C.; Trento, A.; Russi, C. J.; Carballal, G. J. Clin. Virol. 2004, 29, 84-91.
12. Roche-diagnostics. Retrieved 06 November 2005 〈http://www.roche- diagnostics.com〉.
13. William-Carey, M. D. Clin. J. Med. 2003, 70, S7-S13.
14. Antonishyn, N. A.; Ast, V. M.; McDonald, R. R.; Chaudhary, R. K.; Lin, L.; Andonov, A. P.; Horsman, G. B. J. Clin. Microbiol. 2005, 43, 5158-5163.
15. Kintzios, S.; Pistola, E.; Konstas, J.; Bem, F.; Matakiadis, T.; Alexandropoulos, N.; Biselis, I.; Levin, R. Biosens. Bioelectron. 2001, 16, 467.
16. (a) Richalet-Secordel, P. M.; Poisson, F.; VanRegenmortel, M. H. V. Clin. Diagn. Virol. 1996, 5, 111-119.
17. (b) O'Meara, D.; Yun, Z. B.; Sonnerborg, A.; Lundeberg, J. J. Clin. Microbiol. 1998, 36, 2454-2459.
18. Skládal, P.; Riccardi, C. S.; Yamanaka, H.; da Costa, P. I. J. Virol. Methods 2004, 117, 145-151.
19. Bidan, G.; Billon, M.; Livache, T.; Mathis, G.; Roget, A.; Torres-Rodriguez, L. M. Synth. Met. 1999, 102, 1363-1365.
20. (a) Zhao, H. T.; Ju, H. X. Electroanal. 2004, 16, 1642-1646.
21. (b) Kobayashi, M.; Takashi, K. B.; Saito, M.; Kaji, S.; Oomura, M.; Iwabuchi, S.; Morita, Y.; Hasan, O.; Tamiya, E. Electrochem. Commun. 2004, 6, 337-343.
22. (c) Ye, T. K.; Zhao, J. H.; Yan, F.; Zhu, Y. L.; Ju, H. X. Biosens. Bioelectron. 2003, 18, 1501-1508.
23. (d) Ju, H. X.; Ye, Y. K.; Zhao, J. H.; Zhu, Y. L. Anal. Biochem. 2003, 313, 255-261.
24. (e) Meric, B.; Kerman, K.; Ozkan, D.; Kara, P.; Erensoy, S.; Akarca, U. S.; Mascini, M.; Ozsoz, M. Talanta 2002, 56, 837-846.
25. (f) Xu, D. K.; Huang, K.; Liu, Z. H.; Liu, Y. Q.; Ma, L. R. Electroanalysis 2001, 13, 882-887.
26. (g) Erdem, A.; Kerman, K.; Meric, B.; Akarca, U. S.; Ozsoz, M. Anal. Chim. Acta 2000, 422, 139-149.
27. (h) Erdem, A.; Kerman, K.; Meric, B.; Akarca, U. S.; Ozsoz, M. Electroanalysis 1999, 11, 586-588.
28. (i) Hashimoto, K.; Ito, K.; Ishimori, Y. Sens. Actuators, B 1998, 46, 220.
29. Riccardi, C. S.; Dahmouche, K.; Santilli, C. V.; da Costa, P. I.; Yamanaka, H. Talanta 2006, 7, 637-643.
30. Kerman, K.; Kobayashi, M.; Tamiya, E. Meas. Sci. Technol. 2004, 15, R1-R11.
31. Riccardi, C. S.; Yamanaka, H.; Josowicz, M.; Kowalik, J.; Mizaikoff, B.; Kranz, C. Anal. Chem. 2006, 78, 1139-1145.
32. Thompson, L. A.; Kowalik, J.; Josowicz, M.; Janata, J. J. Am. Chem. Soc. 2003, 125, 324-325.
33. (a) Bard, A. J.; Fan, F. R. F.; Mirkin, M. V. Electroanal. Chem. 1994, 18, 243-373.
34. (b) Yasukawa, T.; Kaya, T.; Matsue, T. Anal. Chem. 1999, 71, 4637-4641.
35. (c) Wei, C.; Bard, A. J.; Nagy, G.; Toth, K. Anal. Chem. 1995, 67, 1346-1356.
36. Kueng, A.; Kranz, C.; Mizaikoff, B. Biosens. Bioelectron. 2005, 21, 346-353.
37. (a) Hartung, J.; Kowalik, J.; Kranz, C.; Janata, J.; Josowicz, M.; Sinha, A.; McCoy, K. J. Electrochem. Soc. 2005, 152, E345-E350.
38. (b) Aiyejorun, T.; Kowalik, J.; Janata, J.; Josowicz, M. J. Chem. Educ. 2006, 83, 1208-1211.
39. (c) Kowalik, J.; Josowicz, M.; Janata, J. In Towards Electrochemical Sensors for Genomics and Proteomics; Palecek, E., Scheller, F., Wang, J., Eds.; Elsevier: New York, 2005.
40. (a) Kranz, C.; Friedbacher, G.; Mizaikoff, B.; Lugstein, A.; Smoliner, J.; Bertagnolli, E. Anal. Chem. 2001, 73, 2491-2500.
41. (b) Lugstein, A.; Bertagnolli, E.; Kranz, C.; Kueng, A.; Mizaikoff, B. Appl. Phys. Lett. 2002, 81, 349-351.
42. (c) Lugstein, A.; Bertagnolli, E.; Kranz, C.; Kueng, A.; Mizaikoff, B. Surf. Interface Anal. 2002, 33, 146-150.
43. (d) Kueng, A.; Kranz, C.; Mizaikoff, B.; Lugstein, A.; Bertagnolli, E. Appl. Phys. Lett. 2003, 82, 1592-1594.
44. (e) Kueng, A.; Kranz, C.; Mizaikoff, B.; Lugstein, A.; Bertagnolli, E. Angew. Chem., Int. Ed. 2003, 42, 3238-3240.
45. Miao, W. J.; Ding, Z. F.; Bard, A. J. J. Phys. Chem. B 2002, 106, 1392-1398.
46. Szleifer, I. Bull. Am. Phys. Soc. In press. ISSN: 0003-0503.
47. Qiu, P.; Cai, X.-Y.; Wang, L.; Greene, J. R.; Malcolm, B. BMC Microbiol. 2002, 2, 1471-2180.
48. (a) Grakoui, A.; McCourt, D. W.; Wychowski, C.; Feinstone, S. M.; Rice, C. M. J. Virol. 1993, 67, 2832-2843.
49. Guo, Z.; Guilfoyle, R. A.; Thiel, A. J.; Wang, R.; Smith, L. M. Nucleic Acids Res. 1994, 22, 5456-5465.
50. Nagy, G.; Nagy, L. Fresenius J. Anal. Chem. 2000, 366, 735-744.
51. Mirkin, M. V.; Horrocks, B. R. Anal. Chim. Acta 2000, 406, 119-146.