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Volumn 5, Issue , 2010, Pages

How many antiviral small interfering RNAs may be encoded by the mammalian genomes?

Author keywords

[No Author keywords available]

Indexed keywords

EUKARYOTA; MAMMALIA; VALERIANA;

EID: 78049474225     PISSN: None     EISSN: 17456150     Source Type: Journal    
DOI: 10.1186/1745-6150-5-62     Document Type: Article
Times cited : (9)

References (45)
  • 1
    • 4644350944 scopus 로고    scopus 로고
    • Unlocking the potential of the human genome with RNA interference
    • 10.1038/nature02870, 15372045
    • Hannon GJ, Rossi JJ. Unlocking the potential of the human genome with RNA interference. Nature 2004, 431:371-378. 10.1038/nature02870, 15372045.
    • (2004) Nature , vol.431 , pp. 371-378
    • Hannon, G.J.1    Rossi, J.J.2
  • 2
    • 4644223259 scopus 로고    scopus 로고
    • Mechanisms of gene silencing by double-stranded RNA
    • 10.1038/nature02873, 15372041
    • Meister G, Tuschl T. Mechanisms of gene silencing by double-stranded RNA. Nature 2004, 431:343-349. 10.1038/nature02873, 15372041.
    • (2004) Nature , vol.431 , pp. 343-349
    • Meister, G.1    Tuschl, T.2
  • 3
    • 52049098967 scopus 로고    scopus 로고
    • A piRNA pathway primed by individual transposons is linked to de novo DNA methylation in mice
    • 10.1016/j.molcel.2008.09.003, 2730041, 18922463
    • Aravin AA, Sachidanandam R, Bourc'his D, Schaefer C, Pezic D, Toth KF, Bestor T, Hannon GJ. A piRNA pathway primed by individual transposons is linked to de novo DNA methylation in mice. Mol Cell 2008, 31:785-799. 10.1016/j.molcel.2008.09.003, 2730041, 18922463.
    • (2008) Mol Cell , vol.31 , pp. 785-799
    • Aravin, A.A.1    Sachidanandam, R.2    Bourc'his, D.3    Schaefer, C.4    Pezic, D.5    Toth, K.F.6    Bestor, T.7    Hannon, G.J.8
  • 5
    • 4644336023 scopus 로고    scopus 로고
    • Revealing the world of RNA interference
    • 10.1038/nature02872, 15372040
    • Mello CC, Conte D. Revealing the world of RNA interference. Nature 2004, 431:338-342. 10.1038/nature02872, 15372040.
    • (2004) Nature , vol.431 , pp. 338-342
    • Mello, C.C.1    Conte, D.2
  • 6
    • 57349112888 scopus 로고    scopus 로고
    • MiRNA, siRNA, piRNA: Knowns of the unknown
    • Kutter C, Svoboda P. miRNA, siRNA, piRNA: Knowns of the unknown. RNA Biol 2008, 5:181-188.
    • (2008) RNA Biol , vol.5 , pp. 181-188
    • Kutter, C.1    Svoboda, P.2
  • 7
    • 13244278197 scopus 로고    scopus 로고
    • SiRNA and miRNA: an insight into RISCs
    • 10.1016/j.tibs.2004.12.007, 15691656
    • Tang G. siRNA and miRNA: an insight into RISCs. Trends Biochem Sci 2005, 30:106-114. 10.1016/j.tibs.2004.12.007, 15691656.
    • (2005) Trends Biochem Sci , vol.30 , pp. 106-114
    • Tang, G.1
  • 8
    • 4644309196 scopus 로고    scopus 로고
    • The functions of animal microRNAs
    • 10.1038/nature02871, 15372042
    • Ambros V. The functions of animal microRNAs. Nature 2004, 431:350-355. 10.1038/nature02871, 15372042.
    • (2004) Nature , vol.431 , pp. 350-355
    • Ambros, V.1
  • 9
    • 0038299558 scopus 로고    scopus 로고
    • Role of microRNAs in plant and animal development
    • 10.1126/science.1085242, 12869753
    • Carrington JC, Ambros V. Role of microRNAs in plant and animal development. Science 2003, 301:336-338. 10.1126/science.1085242, 12869753.
    • (2003) Science , vol.301 , pp. 336-338
    • Carrington, J.C.1    Ambros, V.2
  • 11
    • 33845223393 scopus 로고    scopus 로고
    • Transposable elements and the evolution of eukaryotic genomes
    • 10.1073/pnas.0607612103, 1693792, 17101965
    • Wessler SR. Transposable elements and the evolution of eukaryotic genomes. Proc Natl Acad Sci USA 2006, 103:17600-17601. 10.1073/pnas.0607612103, 1693792, 17101965.
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 17600-17601
    • Wessler, S.R.1
  • 12
    • 40449139336 scopus 로고    scopus 로고
    • Mammalian non-LTR retrotransposons: for better or worse, in sickness and in health
    • 10.1101/gr.5558208, 18256243
    • Belancio VP, Hedges DJ, Deininger P. Mammalian non-LTR retrotransposons: for better or worse, in sickness and in health. Genome Res 2008, 18:343-358. 10.1101/gr.5558208, 18256243.
    • (2008) Genome Res , vol.18 , pp. 343-358
    • Belancio, V.P.1    Hedges, D.J.2    Deininger, P.3
  • 13
    • 57149104113 scopus 로고    scopus 로고
    • An epigenetic role for maternally inherited piRNAs in transposon silencing
    • 10.1126/science.1165171, 2805124, 19039138
    • Brennecke J, Malone CD, Aravin AA, Sachidanandam R, Stark A, Hannon GJ. An epigenetic role for maternally inherited piRNAs in transposon silencing. Science 2008, 322:1387-1392. 10.1126/science.1165171, 2805124, 19039138.
    • (2008) Science , vol.322 , pp. 1387-1392
    • Brennecke, J.1    Malone, C.D.2    Aravin, A.A.3    Sachidanandam, R.4    Stark, A.5    Hannon, G.J.6
  • 14
    • 23844456247 scopus 로고    scopus 로고
    • Penelope-like elements--a new class of retroelements: distribution, function and possible evolutionary significance
    • 10.1159/000084984, 16093704
    • Evgen'ev MB, Arkhipova IR. Penelope-like elements--a new class of retroelements: distribution, function and possible evolutionary significance. Cytogenet Genome Res 2005, 110:510-521. 10.1159/000084984, 16093704.
    • (2005) Cytogenet Genome Res , vol.110 , pp. 510-521
    • Evgen'ev, M.B.1    Arkhipova, I.R.2
  • 15
    • 70849129445 scopus 로고    scopus 로고
    • Retroelements and their impact on genome evolution and functioning
    • 10.1007/s00018-009-0107-2, 19649766
    • Gogvadze E, Buzdin A. Retroelements and their impact on genome evolution and functioning. Cell Mol Life Sci 2009, 66:3727-3742. 10.1007/s00018-009-0107-2, 19649766.
    • (2009) Cell Mol Life Sci , vol.66 , pp. 3727-3742
    • Gogvadze, E.1    Buzdin, A.2
  • 16
    • 70350026180 scopus 로고    scopus 로고
    • The possible effect of transposons on the Drosophila melanogaster somatic mutation and recombination test
    • Zakharenko L, Perepelkina M. The possible effect of transposons on the Drosophila melanogaster somatic mutation and recombination test. Mutat Res 2009, 670:1-5.
    • (2009) Mutat Res , vol.670 , pp. 1-5
    • Zakharenko, L.1    Perepelkina, M.2
  • 17
    • 0035838369 scopus 로고    scopus 로고
    • Double-stranded RNA-mediated silencing of genomic tandem repeats and transposable elements in the D. melanogaster germline
    • 10.1016/S0960-9822(01)00299-8, 11470406
    • Aravin AA, Naumova NM, Tulin AV, Vagin VV, Rozovsky YM, Gvozdev VA. Double-stranded RNA-mediated silencing of genomic tandem repeats and transposable elements in the D. melanogaster germline. Curr Biol 2001, 11:1017-1027. 10.1016/S0960-9822(01)00299-8, 11470406.
    • (2001) Curr Biol , vol.11 , pp. 1017-1027
    • Aravin, A.A.1    Naumova, N.M.2    Tulin, A.V.3    Vagin, V.V.4    Rozovsky, Y.M.5    Gvozdev, V.A.6
  • 18
    • 0032717319 scopus 로고    scopus 로고
    • The rde-1 gene, RNA interference, and transposon silencing in C. elegans
    • 10.1016/S0092-8674(00)81644-X, 10535731
    • Tabara H, Sarkissian M, Kelly WG, Fleenor J, Grishok A, Timmons L, Fire A, Mello CC. The rde-1 gene, RNA interference, and transposon silencing in C. elegans. Cell 1999, 99:123-132. 10.1016/S0092-8674(00)81644-X, 10535731.
    • (1999) Cell , vol.99 , pp. 123-132
    • Tabara, H.1    Sarkissian, M.2    Kelly, W.G.3    Fleenor, J.4    Grishok, A.5    Timmons, L.6    Fire, A.7    Mello, C.C.8
  • 19
    • 0028692806 scopus 로고
    • I factors in Drosophila melanogaster: transposition under control
    • 10.1007/BF01435243, 7813907
    • Busseau I, Chaboissier MC, Pelisson A, Bucheton A. I factors in Drosophila melanogaster: transposition under control. Genetica 1994, 93:101-116. 10.1007/BF01435243, 7813907.
    • (1994) Genetica , vol.93 , pp. 101-116
    • Busseau, I.1    Chaboissier, M.C.2    Pelisson, A.3    Bucheton, A.4
  • 20
    • 55849106286 scopus 로고    scopus 로고
    • Natural epigenetic protection against the I-factor, a Drosophila LINE retrotransposon, by remnants of ancestral invasions
    • 10.1371/journal.pone.0000304, 1810428, 17375190
    • Dramard X, Heidmann T, Jensen S. Natural epigenetic protection against the I-factor, a Drosophila LINE retrotransposon, by remnants of ancestral invasions. PLoS One 2007, 2:e304. 10.1371/journal.pone.0000304, 1810428, 17375190.
    • (2007) PLoS One , vol.2
    • Dramard, X.1    Heidmann, T.2    Jensen, S.3
  • 21
    • 34548784928 scopus 로고    scopus 로고
    • Repeat-associated siRNAs cause chromatin silencing of retrotransposons in the Drosophila melanogaster germline
    • 10.1093/nar/gkm576, 2018648, 17702759
    • Klenov MS, Lavrov SA, Stolyarenko AD, Ryazansky SS, Aravin AA, Tuschl T, Gvozdev VA. Repeat-associated siRNAs cause chromatin silencing of retrotransposons in the Drosophila melanogaster germline. Nucleic Acids Res 2007, 35:5430-5438. 10.1093/nar/gkm576, 2018648, 17702759.
    • (2007) Nucleic Acids Res , vol.35 , pp. 5430-5438
    • Klenov, M.S.1    Lavrov, S.A.2    Stolyarenko, A.D.3    Ryazansky, S.S.4    Aravin, A.A.5    Tuschl, T.6    Gvozdev, V.A.7
  • 23
    • 70449427069 scopus 로고    scopus 로고
    • Hypothesis for heritable, anti-viral immunity in crustaceans and insects
    • 10.1186/1745-6150-4-32, 2757015, 19725947
    • Flegel TW. Hypothesis for heritable, anti-viral immunity in crustaceans and insects. Biol Direct 2009, 4:32. 10.1186/1745-6150-4-32, 2757015, 19725947.
    • (2009) Biol Direct , vol.4 , pp. 32
    • Flegel, T.W.1
  • 24
    • 76949095552 scopus 로고    scopus 로고
    • Taming of the shrewd: novel eukaryotic genes from RNA viruses
    • 10.1186/1741-7007-8-2, 2823675, 20067611
    • Koonin EV. Taming of the shrewd: novel eukaryotic genes from RNA viruses. BMC Biol 8:2. 10.1186/1741-7007-8-2, 2823675, 20067611.
    • BMC Biol , vol.8 , pp. 2
    • Koonin, E.V.1
  • 25
    • 36849042601 scopus 로고    scopus 로고
    • RNA interference against viruses: strike and counterstrike
    • 10.1038/nbt1369, 18066040
    • Haasnoot J, Westerhout EM, Berkhout B. RNA interference against viruses: strike and counterstrike. Nat Biotechnol 2007, 25:1435-1443. 10.1038/nbt1369, 18066040.
    • (2007) Nat Biotechnol , vol.25 , pp. 1435-1443
    • Haasnoot, J.1    Westerhout, E.M.2    Berkhout, B.3
  • 26
    • 58049196894 scopus 로고    scopus 로고
    • RNA-based viral immunity initiated by the Dicer family of host immune receptors
    • 10.1111/j.1600-065X.2008.00722.x, 2676720, 19120484
    • Aliyari R, Ding SW. RNA-based viral immunity initiated by the Dicer family of host immune receptors. Immunol Rev 2009, 227:176-188. 10.1111/j.1600-065X.2008.00722.x, 2676720, 19120484.
    • (2009) Immunol Rev , vol.227 , pp. 176-188
    • Aliyari, R.1    Ding, S.W.2
  • 27
    • 44649110160 scopus 로고    scopus 로고
    • Viral and cellular microRNAs as determinants of viral pathogenesis and immunity
    • 10.1016/j.chom.2008.05.002, 18541214
    • Gottwein E, Cullen BR. Viral and cellular microRNAs as determinants of viral pathogenesis and immunity. Cell Host Microbe 2008, 3:375-387. 10.1016/j.chom.2008.05.002, 18541214.
    • (2008) Cell Host Microbe , vol.3 , pp. 375-387
    • Gottwein, E.1    Cullen, B.R.2
  • 30
  • 31
    • 35349009932 scopus 로고    scopus 로고
    • Interferon modulation of cellular microRNAs as an antiviral mechanism
    • 10.1038/nature06205, 2748825, 17943132
    • Pedersen IM, Cheng G, Wieland S, Volinia S, Croce CM, Chisari FV, David M. Interferon modulation of cellular microRNAs as an antiviral mechanism. Nature 2007, 449:919-922. 10.1038/nature06205, 2748825, 17943132.
    • (2007) Nature , vol.449 , pp. 919-922
    • Pedersen, I.M.1    Cheng, G.2    Wieland, S.3    Volinia, S.4    Croce, C.M.5    Chisari, F.V.6    David, M.7
  • 32
    • 0034660456 scopus 로고    scopus 로고
    • Budding yeast as a model organism for population genetics
    • 10.1002/1097-0061(20000615)16:8<773::AID-YEA599>3.0.CO;2-1, 10861902
    • Zeyl C. Budding yeast as a model organism for population genetics. Yeast 2000, 16:773-784. 10.1002/1097-0061(20000615)16:8<773::AID-YEA599>3.0.CO;2-1, 10861902.
    • (2000) Yeast , vol.16 , pp. 773-784
    • Zeyl, C.1
  • 33
    • 40849114643 scopus 로고    scopus 로고
    • The dynamic nature of eukaryotic genomes
    • 10.1093/molbev/msn032, 2933061, 18258610
    • Parfrey LW, Lahr DJ, Katz LA. The dynamic nature of eukaryotic genomes. Mol Biol Evol 2008, 25:787-794. 10.1093/molbev/msn032, 2933061, 18258610.
    • (2008) Mol Biol Evol , vol.25 , pp. 787-794
    • Parfrey, L.W.1    Lahr, D.J.2    Katz, L.A.3
  • 34
    • 62549132572 scopus 로고    scopus 로고
    • Darwinian evolution in the light of genomics
    • 10.1093/nar/gkp089, 2651812, 19213802
    • Koonin EV. Darwinian evolution in the light of genomics. Nucleic Acids Res 2009, 37:1011-1034. 10.1093/nar/gkp089, 2651812, 19213802.
    • (2009) Nucleic Acids Res , vol.37 , pp. 1011-1034
    • Koonin, E.V.1
  • 35
    • 34547396004 scopus 로고    scopus 로고
    • The frailty of adaptive hypotheses for the origins of organismal complexity
    • 10.1073/pnas.0702207104, 1876435, 17494740
    • Lynch M. The frailty of adaptive hypotheses for the origins of organismal complexity. Proc Natl Acad Sci USA 2007, 104(Suppl 1):8597-8604. 10.1073/pnas.0702207104, 1876435, 17494740.
    • (2007) Proc Natl Acad Sci USA , vol.104 , Issue.SUPPL. 1 , pp. 8597-8604
    • Lynch, M.1
  • 37
    • 34249088350 scopus 로고    scopus 로고
    • Genome-wide transcription and the implications for genomic organization
    • 10.1038/nrg2083, 17486121
    • Kapranov P, Willingham AT, Gingeras TR. Genome-wide transcription and the implications for genomic organization. Nat Rev Genet 2007, 8:413-423. 10.1038/nrg2083, 17486121.
    • (2007) Nat Rev Genet , vol.8 , pp. 413-423
    • Kapranov, P.1    Willingham, A.T.2    Gingeras, T.R.3
  • 38
    • 59449090539 scopus 로고    scopus 로고
    • The problem of the eukaryotic genome size
    • 10.1134/S0006297908130117, 19216716
    • Patrushev LI, Minkevich IG. The problem of the eukaryotic genome size. Biochemistry (Mosc) 2008, 73:1519-1552. 10.1134/S0006297908130117, 19216716.
    • (2008) Biochemistry (Mosc) , vol.73 , pp. 1519-1552
    • Patrushev, L.I.1    Minkevich, I.G.2
  • 39
    • 33744982923 scopus 로고    scopus 로고
    • Adenovirus: from foe to friend
    • 10.1002/rmv.494, 16710837
    • Goncalves MA, de Vries AA. Adenovirus: from foe to friend. Rev Med Virol 2006, 16:167-186. 10.1002/rmv.494, 16710837.
    • (2006) Rev Med Virol , vol.16 , pp. 167-186
    • Goncalves, M.A.1    de Vries, A.A.2
  • 40
    • 0029910278 scopus 로고    scopus 로고
    • Monomeric scAlu and nascent dimeric Alu RNAs induced by adenovirus are assembled into SRP9/14-containing RNPs in HeLa cells
    • 10.1093/nar/24.21.4165, 146241, 8932367
    • Chang DY, Hsu K, Maraia RJ. Monomeric scAlu and nascent dimeric Alu RNAs induced by adenovirus are assembled into SRP9/14-containing RNPs in HeLa cells. Nucleic Acids Res 1996, 24:4165-4170. 10.1093/nar/24.21.4165, 146241, 8932367.
    • (1996) Nucleic Acids Res , vol.24 , pp. 4165-4170
    • Chang, D.Y.1    Hsu, K.2    Maraia, R.J.3
  • 42
    • 0029880141 scopus 로고    scopus 로고
    • DNA damage: chemistry, repair, and mutagenic potential
    • 10.1006/rtph.1996.0002, 8628915
    • Singer B. DNA damage: chemistry, repair, and mutagenic potential. Regul Toxicol Pharmacol 1996, 23:2-13. 10.1006/rtph.1996.0002, 8628915.
    • (1996) Regul Toxicol Pharmacol , vol.23 , pp. 2-13
    • Singer, B.1
  • 43
    • 58749108439 scopus 로고    scopus 로고
    • Dose-dependent alterations in gene expression in mouse liver induced by diethylnitrosamine and ethylnitrosourea and determined by quantitative real-time PCR
    • Watanabe T, Tanaka G, Hamada S, Namiki C, Suzuki T, Nakajima M, Furihata C. Dose-dependent alterations in gene expression in mouse liver induced by diethylnitrosamine and ethylnitrosourea and determined by quantitative real-time PCR. Mutat Res 2009, 673:9-20.
    • (2009) Mutat Res , vol.673 , pp. 9-20
    • Watanabe, T.1    Tanaka, G.2    Hamada, S.3    Namiki, C.4    Suzuki, T.5    Nakajima, M.6    Furihata, C.7


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