-
1
-
-
27144439460
-
Contribution of 16S rRNA nucleotides forming the 30S subunit A and P sites to translation in Escherichia coli
-
Abdi, N.M. and Fredrick, K. 2005. Contribution of 16S rRNA nucleotides forming the 30S subunit A and P sites to translation in Escherichia coli. RNA 11: 1624-1632.
-
(2005)
RNA
, vol.11
, pp. 1624-1632
-
-
Abdi, N.M.1
Fredrick, K.2
-
2
-
-
20444365142
-
The cryo-EM structure of a translation initiation complex from Escherichia coli
-
Allen, G.S., Zavialov, A., Gursky, R., Ehrenberg, M., and Frank, J. 2005. The cryo-EM structure of a translation initiation complex from Escherichia coli. Cell 121: 703-712.
-
(2005)
Cell
, vol.121
, pp. 703-712
-
-
Allen, G.S.1
Zavialov, A.2
Gursky, R.3
Ehrenberg, M.4
Frank, J.5
-
3
-
-
27144460984
-
Pro editing by Haemophilus influenzae YbaK via a novel synthetase-YbaK-tRNA ternary complex
-
Pro editing by Haemophilus influenzae YbaK via a novel synthetase-YbaK-tRNA ternary complex. J. Biol. Chem. 280: 34465-34472.
-
(2005)
J. Biol. Chem
, vol.280
, pp. 34465-34472
-
-
An, S.1
Musier-Forsyth, K.2
-
4
-
-
0142041880
-
The roles of initiation factor 2 and guanosine triphosphate in initiation of protein synthesis
-
Antoun, A., Pavlov, M.Y., Andersson, K., Tenson, T., and Ehrenberg, M. 2003. The roles of initiation factor 2 and guanosine triphosphate in initiation of protein synthesis. EMBO J. 22: 5593-5601.
-
(2003)
EMBO J
, vol.22
, pp. 5593-5601
-
-
Antoun, A.1
Pavlov, M.Y.2
Andersson, K.3
Tenson, T.4
Ehrenberg, M.5
-
5
-
-
33745943856
-
How initiation factors maximize the accuracy of tRNA selection in initiation of bacterial protein synthesis
-
Antoun, A., Pavlov, M.Y., Lovmar, M., and Ehrenberg, M. 2006a. How initiation factors maximize the accuracy of tRNA selection in initiation of bacterial protein synthesis. Mol. Cell 23: 183-193.
-
(2006)
Mol. Cell
, vol.23
, pp. 183-193
-
-
Antoun, A.1
Pavlov, M.Y.2
Lovmar, M.3
Ehrenberg, M.4
-
6
-
-
33745763700
-
How initiation factors tune the rate of initiation of protein synthesis in bacteria
-
Antoun, A., Pavlov, M.Y., Lovmar, M., and Ehrenberg, M. 2006b. How initiation factors tune the rate of initiation of protein synthesis in bacteria. EMBO J. 25: 2539-2550.
-
(2006)
EMBO J
, vol.25
, pp. 2539-2550
-
-
Antoun, A.1
Pavlov, M.Y.2
Lovmar, M.3
Ehrenberg, M.4
-
7
-
-
33750488430
-
Structural basis for mRNA and tRNA positioning on the ribosome
-
Berk, V., Zhang, W., Pai, R.D., and Cate, J.H.D. 2006. Structural basis for mRNA and tRNA positioning on the ribosome. Proc. Natl. Acad. Sci. 103: 15830-15834.
-
(2006)
Proc. Natl. Acad. Sci
, vol.103
, pp. 15830-15834
-
-
Berk, V.1
Zhang, W.2
Pai, R.D.3
Cate, J.H.D.4
-
8
-
-
0022887593
-
Escherichia coli protein synthesis initiation factor IF3 controls its own gene expression at the translational level in vivo
-
Butler, J.S., Springer, M., Dondon, J., Graffe, M., and Grunberg-Manago, M. 1986. Escherichia coli protein synthesis initiation factor IF3 controls its own gene expression at the translational level in vivo. J. Mol. Biol. 192: 767-780.
-
(1986)
J. Mol. Biol
, vol.192
, pp. 767-780
-
-
Butler, J.S.1
Springer, M.2
Dondon, J.3
Graffe, M.4
Grunberg-Manago, M.5
-
9
-
-
2542445479
-
AUU-to-AUG mutation in the initiator codon of the translation initiation factor IF3 abolishes translational autocontrol of its own gene (infC) in vivo
-
Butler, J.S., Springer, M., and Grunberg-Manago, M. 1987. AUU-to-AUG mutation in the initiator codon of the translation initiation factor IF3 abolishes translational autocontrol of its own gene (infC) in vivo. Proc. Natl. Acad. Sci. 84: 4022-4025.
-
(1987)
Proc. Natl. Acad. Sci
, vol.84
, pp. 4022-4025
-
-
Butler, J.S.1
Springer, M.2
Grunberg-Manago, M.3
-
10
-
-
0035910393
-
Crystal structure of an initiation factor bound to the 30S ribosomal subunit
-
Carter, A.P., Clemons Jr., W.M., Brodersen, D.E., Morgan-Warren, R.J., Hartsch, T., Wimberly, B.T., and Ramakrishnan, V. 2001. Crystal structure of an initiation factor bound to the 30S ribosomal subunit. Science 291: 498-501.
-
(2001)
Science
, vol.291
, pp. 498-501
-
-
Carter, A.P.1
Clemons Jr., W.M.2
Brodersen, D.E.3
Morgan-Warren, R.J.4
Hartsch, T.5
Wimberly, B.T.6
Ramakrishnan, V.7
-
11
-
-
0034759978
-
Interaction of translation initiation factor 3 with the 30S ribosomal subunit
-
Dallas, A. and Noller, H.F. 2001. Interaction of translation initiation factor 3 with the 30S ribosomal subunit. Mol. Cell 8: 855-864.
-
(2001)
Mol. Cell
, vol.8
, pp. 855-864
-
-
Dallas, A.1
Noller, H.F.2
-
12
-
-
0035073865
-
A universal mode of helix packing in RNA
-
Doherty, E.A., Batey, R.T., Masquida, B., and Doudna, J.A. 2001. A universal mode of helix packing in RNA. Nat. Struct. Biol. 8: 339-343.
-
(2001)
Nat. Struct. Biol
, vol.8
, pp. 339-343
-
-
Doherty, E.A.1
Batey, R.T.2
Masquida, B.3
Doudna, J.A.4
-
13
-
-
2942592157
-
Contribution of the esterified amino acid to the binding of aminoacylated tRNAs to the ribosomal P- and A-sites
-
Fahlman, R.P. and Uhlenbeck, O.C. 2004. Contribution of the esterified amino acid to the binding of aminoacylated tRNAs to the ribosomal P- and A-sites. Biochemistry 43: 7575-7583.
-
(2004)
Biochemistry
, vol.43
, pp. 7575-7583
-
-
Fahlman, R.P.1
Uhlenbeck, O.C.2
-
14
-
-
0242439747
-
Initiation factors in the early events of mRNA translation in bacteria
-
Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
Gualerzi, C.O., Brandi, L., Caserta, E., Garofalo, C., Lammi, M., La Teana, A., Petrelli, D., Spurio, R., Tomsic, J., and Pon, C.L. 2001. Initiation factors in the early events of mRNA translation in bacteria. The Ribosome. pp. 363-376. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
-
(2001)
The Ribosome
, pp. 363-376
-
-
Gualerzi, C.O.1
Brandi, L.2
Caserta, E.3
Garofalo, C.4
Lammi, M.5
La Teana, A.6
Petrelli, D.7
Spurio, R.8
Tomsic, J.9
Pon, C.L.10
-
15
-
-
0030690291
-
IF3-mediated suppression of a GUA initiation codon mutation in the recJ gene of Escherichia coli
-
Haggerty, T.J. and Lovett, S.T. 1997. IF3-mediated suppression of a GUA initiation codon mutation in the recJ gene of Escherichia coli. J. Bacteriol. 179: 6705-6713.
-
(1997)
J. Bacteriol
, vol.179
, pp. 6705-6713
-
-
Haggerty, T.J.1
Lovett, S.T.2
-
16
-
-
33748582906
-
Crystal structure of a 70S ribosome-tRNA complex reveals functional interactions and rearrangements
-
Korostelev, A., Trakhanov, S., Laurberg, M., and Noller, H.F. 2006. Crystal structure of a 70S ribosome-tRNA complex reveals functional interactions and rearrangements. Cell 126: 1-13.
-
(2006)
Cell
, vol.126
, pp. 1-13
-
-
Korostelev, A.1
Trakhanov, S.2
Laurberg, M.3
Noller, H.F.4
-
17
-
-
27944442879
-
Involvement of 16S rRNA nucleotides G1338 and A1339 in discrimination of initiator tRNA
-
Lancaster, L. and Noller, H.F. 2005. Involvement of 16S rRNA nucleotides G1338 and A1339 in discrimination of initiator tRNA. Mol. Cell 20: 623-632.
-
(2005)
Mol. Cell
, vol.20
, pp. 623-632
-
-
Lancaster, L.1
Noller, H.F.2
-
18
-
-
0026757771
-
Striking effects of coupling mutations in the acceptor stem on recognition of tRNAs by Escherichia coli Met-tRNA synthetase and Met-tRNA transformylase
-
Lee, C., Dyson, M.R., Mandal, N., Varshney, U., Bahramian, B., and Rajbhandary, U.L. 1992. Striking effects of coupling mutations in the acceptor stem on recognition of tRNAs by Escherichia coli Met-tRNA synthetase and Met-tRNA transformylase. Proc. Natl. Acad. Sci. 89: 9262-9266.
-
(1992)
Proc. Natl. Acad. Sci
, vol.89
, pp. 9262-9266
-
-
Lee, C.1
Dyson, M.R.2
Mandal, N.3
Varshney, U.4
Bahramian, B.5
Rajbhandary, U.L.6
-
19
-
-
0029905958
-
Genetic analysis of the Shine-Dalgarno interaction: Selection of alternative functional mRNA-rRNA combinations
-
Lee, K., Holland-Staley, C.A., and Cunningham, P.R. 1996. Genetic analysis of the Shine-Dalgarno interaction: Selection of alternative functional mRNA-rRNA combinations. RNA 2: 1270-1285.
-
(1996)
RNA
, vol.2
, pp. 1270-1285
-
-
Lee, K.1
Holland-Staley, C.A.2
Cunningham, P.R.3
-
20
-
-
0029904026
-
Role of the three consecutive G:C base pairs conserved in the anticodon stem of initiator tRNAs in initiation of protein synthesis in Escherichia coli
-
Mandal, N., Mangroo, D., Dalluge, J.J., McCloskey, J.A., and Raj-Bhandary, U.L. 1996. Role of the three consecutive G:C base pairs conserved in the anticodon stem of initiator tRNAs in initiation of protein synthesis in Escherichia coli. RNA 2: 473-482.
-
(1996)
RNA
, vol.2
, pp. 473-482
-
-
Mandal, N.1
Mangroo, D.2
Dalluge, J.J.3
McCloskey, J.A.4
Raj-Bhandary, U.L.5
-
21
-
-
0041806480
-
Ribosomal localization of translation initiation factor IF2
-
Marzi, S., Knight, W., Brandi, L., Caserta, E., Soboleva, N., Hill, W.E., Gualerzi, C.O., and Lodmell, J.S. 2003. Ribosomal localization of translation initiation factor IF2. RNA 9: 958-969.
-
(2003)
RNA
, vol.9
, pp. 958-969
-
-
Marzi, S.1
Knight, W.2
Brandi, L.3
Caserta, E.4
Soboleva, N.5
Hill, W.E.6
Gualerzi, C.O.7
Lodmell, J.S.8
-
22
-
-
0035787915
-
Initiator tRNA and its role in initiation of protein synthesis
-
Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
Mayer, C., Stortchevoi, A., Kohrer, C., Varshney, U., and RajBhandary, U.L. 2001. Initiator tRNA and its role in initiation of protein synthesis. Cold Spring Harbor Symposia on Quantitative Biology. pp. 195-206. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
-
(2001)
Cold Spring Harbor Symposia on Quantitative Biology
, pp. 195-206
-
-
Mayer, C.1
Stortchevoi, A.2
Kohrer, C.3
Varshney, U.4
RajBhandary, U.L.5
-
23
-
-
0033551178
-
Location of translational initiation factor IF3 on the small ribosomal subunit
-
McCutcheon, J.P., Agrawal, R.K., Philips, S.M., Grassucci, R.A., Gerchman, S.E., ClemonsJr., W.M., Ramakrishnan, V., and Frank, J. 1999. Location of translational initiation factor IF3 on the small ribosomal subunit. Proc. Natl. Acad. Sci. 96: 4301-4306.
-
(1999)
Proc. Natl. Acad. Sci
, vol.96
, pp. 4301-4306
-
-
McCutcheon, J.P.1
Agrawal, R.K.2
Philips, S.M.3
Grassucci, R.A.4
Gerchman, S.E.5
ClemonsJr, W.M.6
Ramakrishnan, V.7
Frank, J.8
-
24
-
-
0029051704
-
Specific protection of 16 S rRNA by translational initiation factors
-
Moazed, D., Samaha, R.R., Gualerzi, C., and Noller, H.F. 1995. Specific protection of 16 S rRNA by translational initiation factors. J. Mol. Biol. 248: 207-210.
-
(1995)
J. Mol. Biol
, vol.248
, pp. 207-210
-
-
Moazed, D.1
Samaha, R.R.2
Gualerzi, C.3
Noller, H.F.4
-
25
-
-
0026019013
-
Hierarchies of base-pair preferences in the P22 ant promoter
-
Moyle, H., Waldburger, C., and Susskind, M.M. 1991. Hierarchies of base-pair preferences in the P22 ant promoter. J. Bacteriol. 173: 1944-1950.
-
(1991)
J. Bacteriol
, vol.173
, pp. 1944-1950
-
-
Moyle, H.1
Waldburger, C.2
Susskind, M.M.3
-
26
-
-
0030763966
-
Decoding fidelity at the ribosomal A and P sites: Influence of mutations in three different regions of the decoding domain in 16S rRNA
-
doi: 10.1093/nar/25.6.1185
-
O'Connor, M., Thomas, C.L., Zimmermann, R.A., and Dahlberg, A.E. 1997. Decoding fidelity at the ribosomal A and P sites: Influence of mutations in three different regions of the decoding domain in 16S rRNA. Nucleic Acids Res. 25: 1185-1193. doi: 10.1093/nar/25.6.1185.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 1185-1193
-
-
O'Connor, M.1
Thomas, C.L.2
Zimmermann, R.A.3
Dahlberg, A.E.4
-
27
-
-
0034955379
-
Altered discrimination of start codons and initiator tRNAs by mutant initiation factor 3
-
O'Connor, M., Gregory, S.T., Raj-Bhandary, U.L., and Dahlberg, A.E. 2001. Altered discrimination of start codons and initiator tRNAs by mutant initiation factor 3. RNA 7: 969-978.
-
(2001)
RNA
, vol.7
, pp. 969-978
-
-
O'Connor, M.1
Gregory, S.T.2
Raj-Bhandary, U.L.3
Dahlberg, A.E.4
-
28
-
-
0029879006
-
Physological effects of translation initiation factor IF3 and ribosomal protein L20 in Escherichia coli
-
Olsson, C.L., Graffe, M., Springer, M., and Hershey, J.W.B. 1996. Physological effects of translation initiation factor IF3 and ribosomal protein L20 in Escherichia coli. Mol. Gen. Genet. 250: 705-714.
-
(1996)
Mol. Gen. Genet
, vol.250
, pp. 705-714
-
-
Olsson, C.L.1
Graffe, M.2
Springer, M.3
Hershey, J.W.B.4
-
29
-
-
0028604471
-
Rapid confirmation of single copy l prophage integration by PCR
-
doi: 10.1093/nar/22.25.5765
-
Powell, B.S., Court, D.L., Nakamura, Y., Rivas, M.P., and Turnbough, C.L. 1994. Rapid confirmation of single copy l prophage integration by PCR. Nucleic Acids Res. 22: 5765-5766. doi: 10.1093/nar/22.25.5765.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 5765-5766
-
-
Powell, B.S.1
Court, D.L.2
Nakamura, Y.3
Rivas, M.P.4
Turnbough, C.L.5
-
30
-
-
0029742167
-
The role of the AUU initiation codon in the negative feedback regulation of the gene for translation initiation factor IF3 in Escherichia coli
-
Sacerdot, C., Chiaruttini, C., Engst, K., Graffe, M., Milet, M., Mathy, N., Dondon, J., and Springer, M. 1996. The role of the AUU initiation codon in the negative feedback regulation of the gene for translation initiation factor IF3 in Escherichia coli. Mol. Microbiol. 21: 331-346.
-
(1996)
Mol. Microbiol
, vol.21
, pp. 331-346
-
-
Sacerdot, C.1
Chiaruttini, C.2
Engst, K.3
Graffe, M.4
Milet, M.5
Mathy, N.6
Dondon, J.7
Springer, M.8
-
31
-
-
33749354360
-
Structure of the 70S ribosome complexed with mRNA and tRNA
-
Selmer, M., Dunham, C.M., Murphy, F.V., Weixlbaumer, A., Petry, S., Kelley, A.C., Weir, J.R., and Ramakrishnan, V. 2006. Structure of the 70S ribosome complexed with mRNA and tRNA. Science 313: 1935-1942.
-
(2006)
Science
, vol.313
, pp. 1935-1942
-
-
Selmer, M.1
Dunham, C.M.2
Murphy, F.V.3
Weixlbaumer, A.4
Petry, S.5
Kelley, A.C.6
Weir, J.R.7
Ramakrishnan, V.8
-
32
-
-
0039993541
-
Escherichia coli formylmethionine tRNA: Mutations in the GGG/CCC sequence conserved in anticodon stem of initiator tRNAs affect initiation of protein synthesis and conformation of anticodon loop
-
Seong, B.L. and Raj-Bhandary, U.L. 1987a. Escherichia coli formylmethionine tRNA: Mutations in the GGG/CCC sequence conserved in anticodon stem of initiator tRNAs affect initiation of protein synthesis and conformation of anticodon loop. Proc. Natl. Acad. Sci. 84: 334-338.
-
(1987)
Proc. Natl. Acad. Sci
, vol.84
, pp. 334-338
-
-
Seong, B.L.1
Raj-Bhandary, U.L.2
-
33
-
-
0023502772
-
Mutants of Escherichia coli formylmethionine tRNA: A single base change enables initiator tRNA to act as an elongator in vitro
-
Seong, B.L. and Raj-Bhandary, U.L. 1987b. Mutants of Escherichia coli formylmethionine tRNA: A single base change enables initiator tRNA to act as an elongator in vitro. Proc. Natl. Acad. Sci. 84: 8859-8863.
-
(1987)
Proc. Natl. Acad. Sci
, vol.84
, pp. 8859-8863
-
-
Seong, B.L.1
Raj-Bhandary, U.L.2
-
34
-
-
0016154301
-
The 3′-terminal sequence of E. coli 16S ribosomal RNA complementarity to nonsense triplets and ribosome binding sites
-
Shine, J. and Dalgarno, L. 1974. The 3′-terminal sequence of E. coli 16S ribosomal RNA complementarity to nonsense triplets and ribosome binding sites. Proc. Natl. Acad. Sci. 71: 1342-1346.
-
(1974)
Proc. Natl. Acad. Sci
, vol.71
, pp. 1342-1346
-
-
Shine, J.1
Dalgarno, L.2
-
35
-
-
0035850734
-
Anatomy of Escherichia coli ribosome binding sites
-
Shultzaberger, R.K., Bucheimer, R.E., Rudd, K.E., and Schneider, T.D. 2001. Anatomy of Escherichia coli ribosome binding sites. J. Mol. Biol. 313: 215-228.
-
(2001)
J. Mol. Biol
, vol.313
, pp. 215-228
-
-
Shultzaberger, R.K.1
Bucheimer, R.E.2
Rudd, K.E.3
Schneider, T.D.4
-
36
-
-
0023255472
-
Improved single and multicopy lac-based cloning vectors for protein and operon fusions
-
Simons, R.W., Houman, F., and Kleckner, N. 1987. Improved single and multicopy lac-based cloning vectors for protein and operon fusions. Gene 53: 85-96.
-
(1987)
Gene
, vol.53
, pp. 85-96
-
-
Simons, R.W.1
Houman, F.2
Kleckner, N.3
-
37
-
-
0011343769
-
How ribosomes select initiator regions in mRNA: Base pair formation between the 3′ terminus of 16S rRNA and the mRNA during initiation of protein synthesis in Escherichia coli
-
Steitz, J.A. and Jakes, K. 1975. How ribosomes select initiator regions in mRNA: Base pair formation between the 3′ terminus of 16S rRNA and the mRNA during initiation of protein synthesis in Escherichia coli. Proc. Natl. Acad. Sci. 72: 4734-4738.
-
(1975)
Proc. Natl. Acad. Sci
, vol.72
, pp. 4734-4738
-
-
Steitz, J.A.1
Jakes, K.2
-
38
-
-
33645965566
-
Unfolding of mRNA secondary structure by the bacterial translation initiation complex
-
Studer, S.M. and Joseph, S. 2006. Unfolding of mRNA secondary structure by the bacterial translation initiation complex. Mol. Cell 22: 105-115.
-
(2006)
Mol. Cell
, vol.22
, pp. 105-115
-
-
Studer, S.M.1
Joseph, S.2
-
39
-
-
0029745401
-
Escherichia coli translation initiation factor 3 discriminates the initiation codon in vivo
-
Sussman, J.K., Simons, E.L., and Simons, R.W. 1996. Escherichia coli translation initiation factor 3 discriminates the initiation codon in vivo. Mol. Microbiol. 21: 347-360.
-
(1996)
Mol. Microbiol
, vol.21
, pp. 347-360
-
-
Sussman, J.K.1
Simons, E.L.2
Simons, R.W.3
-
40
-
-
1842403743
-
Mutation at position 791 in Escherichia coli 16S ribosomal RNA affects processes involved in the initiation of protein synthesis
-
Tapprich, W.E., Goss, D.J., and Dahlberg, A.E. 1989. Mutation at position 791 in Escherichia coli 16S ribosomal RNA affects processes involved in the initiation of protein synthesis. Proc. Natl. Acad. Sci. 86: 4927-4931.
-
(1989)
Proc. Natl. Acad. Sci
, vol.86
, pp. 4927-4931
-
-
Tapprich, W.E.1
Goss, D.J.2
Dahlberg, A.E.3
-
41
-
-
0026544545
-
The influence of ribosome-binding-site elements on translational efficiency in Bacillus subtilis and Escherichia coli in vivo
-
Vellanoweth, R.L. and Rabinowitz, J.C. 1992. The influence of ribosome-binding-site elements on translational efficiency in Bacillus subtilis and Escherichia coli in vivo. Mol. Microbiol. 6: 1105-1114.
-
(1992)
Mol. Microbiol
, vol.6
, pp. 1105-1114
-
-
Vellanoweth, R.L.1
Rabinowitz, J.C.2
-
42
-
-
2542470615
-
The active site of the ribosome is composed of two layers of conserved nucleotides with distinct roles in peptide bond formation and peptide release
-
Youngman, E.M., Brunelle, J.L., Kochaniak, A.B., and Green, R. 2004. The active site of the ribosome is composed of two layers of conserved nucleotides with distinct roles in peptide bond formation and peptide release. Cell 117: 589-599.
-
(2004)
Cell
, vol.117
, pp. 589-599
-
-
Youngman, E.M.1
Brunelle, J.L.2
Kochaniak, A.B.3
Green, R.4
|