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Volumn 11, Issue 11, 2005, Pages 1624-1632

Contribution of 16S rRNA nucleotides forming the 30S subunit A and P sites to translation in Escherichia coli

Author keywords

A site; P site; Ribosome; Translation; tRNA rRNA interactions

Indexed keywords

NUCLEOTIDE; RIBOSOME RNA;

EID: 27144439460     PISSN: 13558382     EISSN: 14699001     Source Type: Journal    
DOI: 10.1261/rna.2118105     Document Type: Article
Times cited : (53)

References (47)
  • 1
    • 0030587932 scopus 로고    scopus 로고
    • An a to b conformational switch in EF-Tu
    • Abel, K., Yoder, M.D., Hilgenfeld, R., and Jurnak, F. 1996. An a to b conformational switch in EF-Tu. Structure 4: 1153-1159.
    • (1996) Structure , vol.4 , pp. 1153-1159
    • Abel, K.1    Yoder, M.D.2    Hilgenfeld, R.3    Jurnak, F.4
  • 6
    • 0034699519 scopus 로고    scopus 로고
    • Functional insights from the structure of the 30S ribosomal subunit and its interactions with antibiotics
    • Carter, A.P., Clemons, W.M., Brodersen, D.E., Morgan-Warren, R.J., Wimberly, B.T., and Ramakrishnan, V. 2000. Functional insights from the structure of the 30S ribosomal subunit and its interactions with antibiotics. Nature 407: 340-348.
    • (2000) Nature , vol.407 , pp. 340-348
    • Carter, A.P.1    Clemons, W.M.2    Brodersen, D.E.3    Morgan-Warren, R.J.4    Wimberly, B.T.5    Ramakrishnan, V.6
  • 7
    • 0032881809 scopus 로고    scopus 로고
    • X-ray crystal structures of 70S ribosome functional complexes
    • Cate, J.H., Yusupov, M.M., Yusupova, G.Z., Earnest, T.N., and Noller, H.F. 1999. X-ray crystal structures of 70S ribosome functional complexes. Science 285: 2095-2104.
    • (1999) Science , vol.285 , pp. 2095-2104
    • Cate, J.H.1    Yusupov, M.M.2    Yusupova, G.Z.3    Earnest, T.N.4    Noller, H.F.5
  • 9
    • 0029148205 scopus 로고
    • Structural changes in base-paired region 28 in 16S rRNA close to the decoding region of the 30S ribosomal subunit are correlated to changes in tRNA binding
    • Ericson, G., Minchew, P., and Wollenzien, P. 1995. Structural changes in base-paired region 28 in 16S rRNA close to the decoding region of the 30S ribosomal subunit are correlated to changes in tRNA binding. J. Mol. Biol. 250: 407-419.
    • (1995) J. Mol. Biol. , vol.250 , pp. 407-419
    • Ericson, G.1    Minchew, P.2    Wollenzien, P.3
  • 10
    • 0034607543 scopus 로고    scopus 로고
    • Tagging ribosomal protein S7 allows rapid identification of mutants defective in assembly and function of 30 S subunits
    • Fredrick, K., Dunny, G.M., and Noller, H.F. 2000. Tagging ribosomal protein S7 allows rapid identification of mutants defective in assembly and function of 30 S subunits. J. Mol. Biol. 298: 379-394.
    • (2000) J. Mol. Biol. , vol.298 , pp. 379-394
    • Fredrick, K.1    Dunny, G.M.2    Noller, H.F.3
  • 11
    • 2542474378 scopus 로고
    • Feedback regulation of rRNA and tRNA synthesis and accumulation of free ribosomes after conditional expression of rRNA genes
    • Gourse, R.L., Takebe, Y., Sharrock, R.A., and Nomura, M. 1985. Feedback regulation of rRNA and tRNA synthesis and accumulation of free ribosomes after conditional expression of rRNA genes. Proc. Natl. Acad. Sci. 82: 1069-1073.
    • (1985) Proc. Natl. Acad. Sci. , vol.82 , pp. 1069-1073
    • Gourse, R.L.1    Takebe, Y.2    Sharrock, R.A.3    Nomura, M.4
  • 13
    • 4344693455 scopus 로고    scopus 로고
    • Creating ribosomes with an all-RNA 30S subunit
    • Hoang, L., Fredrick, K., and Noller, H.F. 2004. Creating ribosomes with an all-RNA 30S subunit. Proc. Natl. Acad. Sci. 101: 12439-12443.
    • (2004) Proc. Natl. Acad. Sci. , vol.101 , pp. 12439-12443
    • Hoang, L.1    Fredrick, K.2    Noller, H.F.3
  • 14
    • 0023373136 scopus 로고
    • Specialized ribosome system: Preferential translation of a single mRNA species by a subpopulation of mutated ribosomes in Escherichia coli
    • Hui, A. and de Boer, H.A. 1987. Specialized ribosome system: Preferential translation of a single mRNA species by a subpopulation of mutated ribosomes in Escherichia coli. Proc. Natl. Acad. Sci. 84: 4762-4766.
    • (1987) Proc. Natl. Acad. Sci. , vol.84 , pp. 4762-4766
    • Hui, A.1    De Boer, H.A.2
  • 15
    • 0024293555 scopus 로고
    • Mutagenesis at the mRNA decoding site in the 16S ribosomal RNA using the specialized ribosome system in Escherichia coli
    • Hui, A.S., Eaton, D.H., and de Boer, H.A. 1988. Mutagenesis at the mRNA decoding site in the 16S ribosomal RNA using the specialized ribosome system in Escherichia coli. EMBO J. 7: 4383-4388.
    • (1988) EMBO J. , vol.7 , pp. 4383-4388
    • Hui, A.S.1    Eaton, D.H.2    De Boer, H.A.3
  • 16
    • 0029905958 scopus 로고    scopus 로고
    • Genetic analysis of the Shine-Dalgarno interaction: Selection of alternative functional mRNA-rRNA combinations
    • Lee, K., Holland-Staley, C.A., and Cunningham, P.R. 1996. Genetic analysis of the Shine-Dalgarno interaction: Selection of alternative functional mRNA-rRNA combinations. RNA 2: 1270-1285.
    • (1996) RNA , vol.2 , pp. 1270-1285
    • Lee, K.1    Holland-Staley, C.A.2    Cunningham, P.R.3
  • 17
    • 0031588021 scopus 로고    scopus 로고
    • In vivo determination of RNA structure-function relationships: Analysis of the 790 loop in ribosomal RNA
    • Lee, K., Varma, S., SantaLucia, J., and Cunningham, P.R. 1997. In vivo determination of RNA structure-function relationships: Analysis of the 790 loop in ribosomal RNA. J. Mol. Biol. 269: 732-743.
    • (1997) J. Mol. Biol. , vol.269 , pp. 732-743
    • Lee, K.1    Varma, S.2    SantaLucia, J.3    Cunningham, P.R.4
  • 18
    • 0003098935 scopus 로고    scopus 로고
    • Footprinting and modification-interference analysis of binding sites on RNA
    • ed. C.W.J. Smith, Oxford University Press, Oxford, United Kingdom
    • Merryman, C. and Noller, H.F. 1998. Footprinting and modification- interference analysis of binding sites on RNA. In RNA: protein interactions (ed. C.W.J. Smith), pp. 237-253. Oxford University Press, Oxford, United Kingdom.
    • (1998) RNA: Protein Interactions , pp. 237-253
    • Merryman, C.1    Noller, H.F.2
  • 19
  • 20
    • 0024458904 scopus 로고
    • Intermediate states in the movement of transfer RNA in the ribosome
    • Moazed, D. and Noller, H.F. 1989. Intermediate states in the movement of transfer RNA in the ribosome. Nature 342: 142-148.
    • (1989) Nature , vol.342 , pp. 142-148
    • Moazed, D.1    Noller, H.F.2
  • 21
    • 0026019013 scopus 로고
    • Hierarchies of base pair preferences in the P22 ant promoter
    • Moyle, H., Waldburger, C., and Susskind, M.M. 1991. Hierarchies of base pair preferences in the P22 ant promoter. J. Bacteriol. 173: 1944-1950.
    • (1991) J. Bacteriol. , vol.173 , pp. 1944-1950
    • Moyle, H.1    Waldburger, C.2    Susskind, M.M.3
  • 22
    • 0034637161 scopus 로고    scopus 로고
    • The structural basis of ribosome activity in peptide bond synthesis
    • Nissen, P., Hansen, J., Ban, N., Moore, P.B., and Steitz, T.A. 2000. The structural basis of ribosome activity in peptide bond synthesis. Science 289: 920-930.
    • (2000) Science , vol.289 , pp. 920-930
    • Nissen, P.1    Hansen, J.2    Ban, N.3    Moore, P.B.4    Steitz, T.A.5
  • 23
    • 0025679294 scopus 로고
    • Movement of tRNA but not the nascent peptide during peptide bond formation on ribosomes
    • Odom, O.W., Picking, W.D., and Hardesty, B. 1990. Movement of tRNA but not the nascent peptide during peptide bond formation on ribosomes. Biochemistry 29: 10734-10744.
    • (1990) Biochemistry , vol.29 , pp. 10734-10744
    • Odom, O.W.1    Picking, W.D.2    Hardesty, B.3
  • 25
    • 0037184536 scopus 로고    scopus 로고
    • Selection of tRNA by the ribosome requires a transition from an open to a closed form
    • Ogle, J.M., Murphy, F.V., Tarry, M.J., and Ramakrishnan, V. 2002. Selection of tRNA by the ribosome requires a transition from an open to a closed form. Cell 111: 721-732.
    • (2002) Cell , vol.111 , pp. 721-732
    • Ogle, J.M.1    Murphy, F.V.2    Tarry, M.J.3    Ramakrishnan, V.4
  • 26
    • 0038403669 scopus 로고    scopus 로고
    • Insights into the decoding mechanism from recent ribosome structures
    • Ogle, J.M., Carter, A.P., and Ramakrishnan, V. 2003. Insights into the decoding mechanism from recent ribosome structures. Trends Biochem. Sci. 28: 259-266.
    • (2003) Trends Biochem. Sci. , vol.28 , pp. 259-266
    • Ogle, J.M.1    Carter, A.P.2    Ramakrishnan, V.3
  • 27
    • 0032535207 scopus 로고    scopus 로고
    • Complete kinetic mechanism of elongation factor Tu-dependent binding of aminoacyl-tRNA to the A site of the E. coli ribosome
    • Pape, T., Wintermeyer, W., and Rodnina, M.V. 1998. Complete kinetic mechanism of elongation factor Tu-dependent binding of aminoacyl-tRNA to the A site of the E. coli ribosome. EMBO J. 17: 7490-7497.
    • (1998) EMBO J. , vol.17 , pp. 7490-7497
    • Pape, T.1    Wintermeyer, W.2    Rodnina, M.V.3
  • 28
    • 0033168212 scopus 로고    scopus 로고
    • Induced fit in initial selection and proofreading of aminoacyl-tRNA on the ribosome
    • _. 1999. Induced fit in initial selection and proofreading of aminoacyl-tRNA on the ribosome. EMBO J. 18: 3800-3807.
    • (1999) EMBO J. , vol.18 , pp. 3800-3807
  • 29
    • 0036809730 scopus 로고    scopus 로고
    • Universally conserved interactions between the ribosome and the anticodon stem-loop of A site tRNA important for translocation
    • Phelps, S.S., Jerinic, O., and Joseph, S. 2002. Universally conserved interactions between the ribosome and the anticodon stem-loop of A site tRNA important for translocation. Mol. Cell 10: 799-807.
    • (2002) Mol. Cell , vol.10 , pp. 799-807
    • Phelps, S.S.1    Jerinic, O.2    Joseph, S.3
  • 33
    • 0025012472 scopus 로고
    • Dominant lethal mutations in a conserved loop in 16S rRNA
    • Powers, T. and Noller, H.F. 1990. Dominant lethal mutations in a conserved loop in 16S rRNA. Proc. Natl. Acad. Sci. 87: 1042-1046.
    • (1990) Proc. Natl. Acad. Sci. , vol.87 , pp. 1042-1046
    • Powers, T.1    Noller, H.F.2
  • 35
    • 0020358593 scopus 로고
    • An alternate method for synthesis of double-stranded DNA segments
    • Rossi, J.J., Kierzek, R., Huang, T., Walker, P.A., and Itakura, K. 1982. An alternate method for synthesis of double-stranded DNA segments. J. Biol. Chem. 257: 9226-9229.
    • (1982) J. Biol. Chem. , vol.257 , pp. 9226-9229
    • Rossi, J.J.1    Kierzek, R.2    Huang, T.3    Walker, P.A.4    Itakura, K.5
  • 38
    • 0142178293 scopus 로고    scopus 로고
    • Structures of deacylated tRNA mimics bound to the E site of the large ribosomal subunit
    • Schmeing, T.M., Moore, P.B., and Steitz, T.A. 2003. Structures of deacylated tRNA mimics bound to the E site of the large ribosomal subunit. RNA 9: 1345-1352.
    • (2003) RNA , vol.9 , pp. 1345-1352
    • Schmeing, T.M.1    Moore, P.B.2    Steitz, T.A.3
  • 39
    • 0024271795 scopus 로고
    • Antibiotic resistance mutations in ribosomal RNA genes of Escherichia coli
    • Sigmund, C.D., Ettayebi, M., Borden, A., and Morgan, E.A. 1988. Antibiotic resistance mutations in ribosomal RNA genes of Escherichia coli. Meth. Enzymol. 164: 673-690.
    • (1988) Meth. Enzymol. , vol.164 , pp. 673-690
    • Sigmund, C.D.1    Ettayebi, M.2    Borden, A.3    Morgan, E.A.4
  • 40
    • 0023255472 scopus 로고
    • Improved single and multicopy lac-based cloning vectors for protein and operon fusions
    • Simons, R.W., Houman, F., and Kleckner, N. 1987. Improved single and multicopy lac-based cloning vectors for protein and operon fusions. Gene 53: 85-96.
    • (1987) Gene , vol.53 , pp. 85-96
    • Simons, R.W.1    Houman, F.2    Kleckner, N.3
  • 42
    • 0033569631 scopus 로고    scopus 로고
    • Isolation of kasugamycin resistant mutants in the 16S ribosomal RNA of Escherichia coli
    • Vila-Sanjurjo, A., Squires, C.L., and Dahlberg, A.E. 1999. Isolation of kasugamycin resistant mutants in the 16S ribosomal RNA of Escherichia coli. J. Mol. Biol. 293: 1-8.
    • (1999) J. Mol. Biol. , vol.293 , pp. 1-8
    • Vila-Sanjurjo, A.1    Squires, C.L.2    Dahlberg, A.E.3
  • 43
    • 0028929659 scopus 로고
    • Identification of bases in 16S rRNA essential for tRNA binding at the 30S ribosomal P site
    • von Ahsen, U. and Noller, H.F. 1995. Identification of bases in 16S rRNA essential for tRNA binding at the 30S ribosomal P site. Science 267: 234-237.
    • (1995) Science , vol.267 , pp. 234-237
    • Von Ahsen, U.1    Noller, H.F.2
  • 45
    • 0033543589 scopus 로고    scopus 로고
    • Recognition of the codon-anticodon helix by ribosomal RNA
    • Yoshizawa, S., Fourmy, D., and Puglisi, J.D. 1999. Recognition of the codon-anticodon helix by ribosomal RNA. Science 285: 1722-1725.
    • (1999) Science , vol.285 , pp. 1722-1725
    • Yoshizawa, S.1    Fourmy, D.2    Puglisi, J.D.3
  • 47
    • 0035958587 scopus 로고    scopus 로고
    • The path of messenger RNA through the ribosome
    • Yusupova, G.Z., Yusupov, M., Cate, J.H.D., and Noller, H.F. 2001. The path of messenger RNA through the ribosome. Cell 106: 233-241.
    • (2001) Cell , vol.106 , pp. 233-241
    • Yusupova, G.Z.1    Yusupov, M.2    Cate, J.H.D.3    Noller, H.F.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.