-
1
-
-
0026597063
-
Alzheimer's disease: the amyloid cascade hypothesis
-
Hardy J.A., Higgins G.A. Alzheimer's disease: the amyloid cascade hypothesis. Science 1992, 256:184-185.
-
(1992)
Science
, vol.256
, pp. 184-185
-
-
Hardy, J.A.1
Higgins, G.A.2
-
2
-
-
0037200117
-
Oligomeric and fibrillar species of amyloid-β peptides differentially affect neuronal viability
-
Dahlgren K.N., Manelli A.M., Stine W.B., Baker L.K., Krafft G.A., LaDu M.J. Oligomeric and fibrillar species of amyloid-β peptides differentially affect neuronal viability. J. Biol. Chem. 2002, 277:32046-32053.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 32046-32053
-
-
Dahlgren, K.N.1
Manelli, A.M.2
Stine, W.B.3
Baker, L.K.4
Krafft, G.A.5
LaDu, M.J.6
-
3
-
-
0027258525
-
The carboxy terminus of the β amyloid protein is critical for the seeding of amyloid formation: implications for the pathogenesis of Alzheimer's disease
-
Jarrett J.T., Berger E.P., Lansbury P.T. The carboxy terminus of the β amyloid protein is critical for the seeding of amyloid formation: implications for the pathogenesis of Alzheimer's disease. Biochemistry 1993, 32:4693-4697.
-
(1993)
Biochemistry
, vol.32
, pp. 4693-4697
-
-
Jarrett, J.T.1
Berger, E.P.2
Lansbury, P.T.3
-
4
-
-
35648945914
-
Protein aggregation processes: in search of the mechanism
-
Frieden C. Protein aggregation processes: in search of the mechanism. Protein Sci. 2007, 16:2334-2344.
-
(2007)
Protein Sci.
, vol.16
, pp. 2334-2344
-
-
Frieden, C.1
-
5
-
-
60349087841
-
Biophysical characterization of intrinsically disordered proteins
-
Eliezer D. Biophysical characterization of intrinsically disordered proteins. Curr. Opin. Struct. Biol. 2009, 19:23-30.
-
(2009)
Curr. Opin. Struct. Biol.
, vol.19
, pp. 23-30
-
-
Eliezer, D.1
-
6
-
-
0032855482
-
Methodological and chemical factors affecting amyloid-β peptide amyloidogenicity
-
Zagorski M.G., Yang J., Shao H., Ma K., Zeng H., Hong A. Methodological and chemical factors affecting amyloid-β peptide amyloidogenicity. Methods Enzymol. 1999, 309:189-204.
-
(1999)
Methods Enzymol.
, vol.309
, pp. 189-204
-
-
Zagorski, M.G.1
Yang, J.2
Shao, H.3
Ma, K.4
Zeng, H.5
Hong, A.6
-
7
-
-
49149112780
-
β-Amyloid protein aggregation
-
Humana Press, Clifton, NJ
-
Etienne M.A., Edwin N.J., Aucoin J.P., Russo P.S., McCarley R.L., Hammer R.P. β-Amyloid protein aggregation. Peptide Characterization and Application Protocols 2007, 203-225. Humana Press, Clifton, NJ.
-
(2007)
Peptide Characterization and Application Protocols
, pp. 203-225
-
-
Etienne, M.A.1
Edwin, N.J.2
Aucoin, J.P.3
Russo, P.S.4
McCarley, R.L.5
Hammer, R.P.6
-
8
-
-
0035173352
-
NMR studies in aqueous solution fail to identify significant conformational differences between the monomeric forms of two Alzheimer peptides with widely different plaque-competence, Aβ(1-40)(ox) and Aβ(1-42)(ox)
-
Riek R., Guntert P., Döbeli H., Wipf B., Wüthrich K. NMR studies in aqueous solution fail to identify significant conformational differences between the monomeric forms of two Alzheimer peptides with widely different plaque-competence, Aβ(1-40)(ox) and Aβ(1-42)(ox). Eur. J. Biochem. 2001, 268:5930-5936.
-
(2001)
Eur. J. Biochem.
, vol.268
, pp. 5930-5936
-
-
Riek, R.1
Guntert, P.2
Döbeli, H.3
Wipf, B.4
Wüthrich, K.5
-
9
-
-
23644452100
-
The Alzheimer β-peptide shows temperature-dependent transitions between left-handed 3(1)-helix, ββ-strand and random coil secondary structures
-
Danielsson J., Jarvet J., Damberg P., Gräslund A. The Alzheimer β-peptide shows temperature-dependent transitions between left-handed 3(1)-helix, β-strand and random coil secondary structures. FEBS J. 2005, 272:3938-3949.
-
(2005)
FEBS J.
, vol.272
, pp. 3938-3949
-
-
Danielsson, J.1
Jarvet, J.2
Damberg, P.3
Gräslund, A.4
-
10
-
-
10744219665
-
Solution NMR studies of the Aβ(1-40) and Aβ(1-42) peptides establish that the Met35 oxidation state affects the mechanism of amyloid formation
-
Hou L.M., Shao H.Y., Zhang Y.B., Li H., Menon N.K., Neuhaus E.B., et al. Solution NMR studies of the Aβ(1-40) and Aβ(1-42) peptides establish that the Met35 oxidation state affects the mechanism of amyloid formation. J. Am. Chem. Soc. 2004, 126:1992-2005.
-
(2004)
J. Am. Chem. Soc.
, vol.126
, pp. 1992-2005
-
-
Hou, L.M.1
Shao, H.Y.2
Zhang, Y.B.3
Li, H.4
Menon, N.K.5
Neuhaus, E.B.6
-
11
-
-
0028802212
-
Structure of amyloid A4-(1-40)-peptide of Alzheimer's disease
-
Sticht H., Bayer P., Willbold D., Dames S., Hilbich C., Bayreuther K., et al. Structure of amyloid A4-(1-40)-peptide of Alzheimer's disease. Eur. J. Biochem. 2004, 233:293-298.
-
(2004)
Eur. J. Biochem.
, vol.233
, pp. 293-298
-
-
Sticht, H.1
Bayer, P.2
Willbold, D.3
Dames, S.4
Hilbich, C.5
Bayreuther, K.6
-
12
-
-
0032530953
-
Solution structure of methionine-oxidized amyloid β-peptide (1-40). Does oxidation affect conformational switching?
-
Watson A.A., Fairlie D.P., Craik D.J. Solution structure of methionine-oxidized amyloid β-peptide (1-40). Does oxidation affect conformational switching?. Biochemistry 1998, 37:12700-12706.
-
(1998)
Biochemistry
, vol.37
, pp. 12700-12706
-
-
Watson, A.A.1
Fairlie, D.P.2
Craik, D.J.3
-
13
-
-
0037422540
-
Amyloid β-protein (Aβ) assembly: Aβ40 and Aβ42 oligomerize through distinct pathways
-
Bitan G., Kirkitadze M.D., Lomakin A., Vollers S.S., Benedek G.B., Teplow D.B. Amyloid β-protein (Aβ) assembly: Aβ40 and Aβ42 oligomerize through distinct pathways. Proc. Natl Acad. Sci. USA 2003, 100:330-335.
-
(2003)
Proc. Natl Acad. Sci. USA
, vol.100
, pp. 330-335
-
-
Bitan, G.1
Kirkitadze, M.D.2
Lomakin, A.3
Vollers, S.S.4
Benedek, G.B.5
Teplow, D.B.6
-
14
-
-
34547947641
-
Conversion of non-fibrillar β-sheet oligomers into amyloid fibrils in Alzheimer's disease amyloid peptide aggregation
-
Benseny-Cases N., Cocera M., Cladera J. Conversion of non-fibrillar β-sheet oligomers into amyloid fibrils in Alzheimer's disease amyloid peptide aggregation. Biochem. Biophys. Res. Commun. 2007, 361:916-921.
-
(2007)
Biochem. Biophys. Res. Commun.
, vol.361
, pp. 916-921
-
-
Benseny-Cases, N.1
Cocera, M.2
Cladera, J.3
-
15
-
-
13944282886
-
Amyloid β-protein: monomer structure and early aggregation states of Aβ 42 and its Pro(19) alloform
-
Bernstein S.L., Wyttenbach T., Baumketner A., Shea J.E., Bitan G., Teplow D.B., et al. Amyloid β-protein: monomer structure and early aggregation states of Aβ 42 and its Pro(19) alloform. J. Am. Chem. Soc. 2005, 127:2075-2084.
-
(2005)
J. Am. Chem. Soc.
, vol.127
, pp. 2075-2084
-
-
Bernstein, S.L.1
Wyttenbach, T.2
Baumketner, A.3
Shea, J.E.4
Bitan, G.5
Teplow, D.B.6
-
16
-
-
9044229145
-
On the nucleation and growth of amyloid β-protein fibrils: detection of nuclei and quantitation of rate constants
-
Lomakin A., Chung D.S., Benedek G.B., Kirschner D.A., Teplow D.B. On the nucleation and growth of amyloid β-protein fibrils: detection of nuclei and quantitation of rate constants. Proc. Natl Acad. Sci. USA 1996, 93:1125-1129.
-
(1996)
Proc. Natl Acad. Sci. USA
, vol.93
, pp. 1125-1129
-
-
Lomakin, A.1
Chung, D.S.2
Benedek, G.B.3
Kirschner, D.A.4
Teplow, D.B.5
-
17
-
-
0035812658
-
Identification and characterization of key kinetic intermediates in amyloid β-protein fibrillogenesis
-
Kirkitadze M.D., Condron M.M., Teplow D.B. Identification and characterization of key kinetic intermediates in amyloid β-protein fibrillogenesis. J. Mol. Biol. 2001, 312:1103-1119.
-
(2001)
J. Mol. Biol.
, vol.312
, pp. 1103-1119
-
-
Kirkitadze, M.D.1
Condron, M.M.2
Teplow, D.B.3
-
18
-
-
14844363573
-
Temperature dependence of the nucleation constant rate in β amyloid fibrillogenesis
-
Sabate R., Gallardo M., Estelrich J. Temperature dependence of the nucleation constant rate in β amyloid fibrillogenesis. Int. J. Biol. Macromol. 2005, 35:9-13.
-
(2005)
Int. J. Biol. Macromol.
, vol.35
, pp. 9-13
-
-
Sabate, R.1
Gallardo, M.2
Estelrich, J.3
-
19
-
-
33846005437
-
Absolute correlation between lag time and growth rate in the spontaneous formation of several amyloid-like aggregates and fibrils
-
Fändrich M. Absolute correlation between lag time and growth rate in the spontaneous formation of several amyloid-like aggregates and fibrils. J. Mol. Biol. 2007, 365:1266-1270.
-
(2007)
J. Mol. Biol.
, vol.365
, pp. 1266-1270
-
-
Fändrich, M.1
-
20
-
-
24044518189
-
Protofibril formation of amyloid β-protein at low pH via a non-cooperative elongation mechanism
-
Carrotta R., Manno M., Bulone D., Martorana V., San Biagio P.L. Protofibril formation of amyloid β-protein at low pH via a non-cooperative elongation mechanism. J. Biol. Chem. 2005, 280:30001-30008.
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 30001-30008
-
-
Carrotta, R.1
Manno, M.2
Bulone, D.3
Martorana, V.4
San Biagio, P.L.5
-
21
-
-
0037168655
-
A structural model for Alzheimer's β-amyloid fibrils based on experimental constraints from solid state NMR
-
Petkova A.T., Ishii Y., Balbach J.J., Antzutkin O.N., Leapman R.D., Delaglio F., et al. A structural model for Alzheimer's β-amyloid fibrils based on experimental constraints from solid state NMR. Proc. Natl Acad. Sci. USA 2002, 99:16742-16747.
-
(2002)
Proc. Natl Acad. Sci. USA
, vol.99
, pp. 16742-16747
-
-
Petkova, A.T.1
Ishii, Y.2
Balbach, J.J.3
Antzutkin, O.N.4
Leapman, R.D.5
Delaglio, F.6
-
22
-
-
28444442999
-
3D structure of Alzheimer's amyloid-β(1-42) fibrils
-
Lührs T., Ritter C., Adrian M., Riek-Loher D., Bohrmann B., Döbeli H., et al. 3D structure of Alzheimer's amyloid-β(1-42) fibrils. Proc. Natl Acad. Sci. USA 2005, 102:17342-17347.
-
(2005)
Proc. Natl Acad. Sci. USA
, vol.102
, pp. 17342-17347
-
-
Lührs, T.1
Ritter, C.2
Adrian, M.3
Riek-Loher, D.4
Bohrmann, B.5
Döbeli, H.6
-
23
-
-
70349568356
-
Structural polymorphism of Alzheimer Aβ and other amyloid fibrils
-
Fändrich M., Meinhardt J., Grigorieff N. Structural polymorphism of Alzheimer Aβ and other amyloid fibrils. Prion 2009, 3:89-93.
-
(2009)
Prion
, vol.3
, pp. 89-93
-
-
Fändrich, M.1
Meinhardt, J.2
Grigorieff, N.3
-
24
-
-
57449091884
-
Molecular structural basis for polymorphism in Alzheimer's β-amyloid fibrils
-
Paravastu A.K., Leapman R.D., Yau W.M., Tycko R. Molecular structural basis for polymorphism in Alzheimer's β-amyloid fibrils. Proc. Natl Acad. Sci. USA 2008, 105:18349-18354.
-
(2008)
Proc. Natl Acad. Sci. USA
, vol.105
, pp. 18349-18354
-
-
Paravastu, A.K.1
Leapman, R.D.2
Yau, W.M.3
Tycko, R.4
-
25
-
-
77954892793
-
Polymorphism in Alzheimer Aβ amyloid organization reflects conformational selection in a rugged energy landscape
-
Miller Y., Ma B., Nussinov R. Polymorphism in Alzheimer Aβ amyloid organization reflects conformational selection in a rugged energy landscape. Chem. Rev. 2010, 110:4820-4838.
-
(2010)
Chem. Rev.
, vol.110
, pp. 4820-4838
-
-
Miller, Y.1
Ma, B.2
Nussinov, R.3
-
26
-
-
34248190279
-
Aβ oligomers-a decade of discovery
-
Walsh D.M., Selkoe D.J. Aβ oligomers-a decade of discovery. J. Neurochem. 2007, 101:1172-1184.
-
(2007)
J. Neurochem.
, vol.101
, pp. 1172-1184
-
-
Walsh, D.M.1
Selkoe, D.J.2
-
27
-
-
70349295278
-
Structure-neurotoxicity relationships of amyloid β-protein oligomers
-
Ono K., Condron M.M., Teplow D.B. Structure-neurotoxicity relationships of amyloid β-protein oligomers. Proc. Natl Acad. Sci. USA 2009, 106:14745-14750.
-
(2009)
Proc. Natl Acad. Sci. USA
, vol.106
, pp. 14745-14750
-
-
Ono, K.1
Condron, M.M.2
Teplow, D.B.3
-
28
-
-
77951298407
-
Models of macromolecular crowding effects and the need for quantitative comparisons with experiment
-
Elcock A. Models of macromolecular crowding effects and the need for quantitative comparisons with experiment. Curr. Opin. Struct. Biol. 2010, 20:196-206.
-
(2010)
Curr. Opin. Struct. Biol.
, vol.20
, pp. 196-206
-
-
Elcock, A.1
-
29
-
-
77950219248
-
Elucidation of amyloid β-protein oligomerization mechanisms: discrete molecular dynamics study
-
Urbanc B., Betnel M., Cruz L., Bitan G., Teplow D.B. Elucidation of amyloid β-protein oligomerization mechanisms: discrete molecular dynamics study. J. Am. Chem. Soc. 2010, 132:4266-4280.
-
(2010)
J. Am. Chem. Soc.
, vol.132
, pp. 4266-4280
-
-
Urbanc, B.1
Betnel, M.2
Cruz, L.3
Bitan, G.4
Teplow, D.B.5
-
30
-
-
77649092874
-
Amyloid-β42 oligomer structures from fibrils: a systematic molecular dynamics study
-
Horn A.H.C., Sticht H. Amyloid-β42 oligomer structures from fibrils: a systematic molecular dynamics study. J. Phys. Chem. B 2010, 114:2219-2226.
-
(2010)
J. Phys. Chem. B
, vol.114
, pp. 2219-2226
-
-
Horn, A.H.C.1
Sticht, H.2
-
31
-
-
75649151677
-
Molecular modeling of two distinct triangular oligomers in amyloid β-protein
-
Zheng J., Yu X., Wang J.D., Yang J.C., Wang Q.M. Molecular modeling of two distinct triangular oligomers in amyloid β-protein. J. Phys. Chem. B 2010, 114:463-470.
-
(2010)
J. Phys. Chem. B
, vol.114
, pp. 463-470
-
-
Zheng, J.1
Yu, X.2
Wang, J.D.3
Yang, J.C.4
Wang, Q.M.5
-
32
-
-
84954358028
-
Amyloid β-protein monomer folding: free-energy surfaces reveal alloform-specific differences
-
Yang M., Teplow D.B. Amyloid β-protein monomer folding: free-energy surfaces reveal alloform-specific differences. J. Mol. Biol. 2008, 384:450-464.
-
(2008)
J. Mol. Biol.
, vol.384
, pp. 450-464
-
-
Yang, M.1
Teplow, D.B.2
-
33
-
-
34247234602
-
The Alzheimer's peptides Aβ40 and 42 adopt distinct conformations in water: a combined MD/NMR study
-
Sgourakis N.G., Yan Y., Mccallum S.A., Wang C., Garcia A.E. The Alzheimer's peptides Aβ40 and 42 adopt distinct conformations in water: a combined MD/NMR study. J. Mol. Biol. 2007, 368:1448-1457.
-
(2007)
J. Mol. Biol.
, vol.368
, pp. 1448-1457
-
-
Sgourakis, N.G.1
Yan, Y.2
Mccallum, S.A.3
Wang, C.4
Garcia, A.E.5
-
34
-
-
38049136879
-
Effects of zinc binding on the conformational distribution of the amyloid-β peptide based on molecular dynamics simulations
-
Li W.F., Zhang J., Su Y., Wang J., Qin M., Wang W. Effects of zinc binding on the conformational distribution of the amyloid-β peptide based on molecular dynamics simulations. J. Phys. Chem. B 2007, 111:13814-13821.
-
(2007)
J. Phys. Chem. B
, vol.111
, pp. 13814-13821
-
-
Li, W.F.1
Zhang, J.2
Su, Y.3
Wang, J.4
Qin, M.5
Wang, W.6
-
35
-
-
17244372981
-
Conformational transition of amyloid β-peptide
-
Xu Y.C., Shen J.J., Luo X.M., Zhu W.L., Chen K.X., Ma J.P., et al. Conformational transition of amyloid β-peptide. Proc. Natl Acad. Sci. USA 2005, 102:5403-5407.
-
(2005)
Proc. Natl Acad. Sci. USA
, vol.102
, pp. 5403-5407
-
-
Xu, Y.C.1
Shen, J.J.2
Luo, X.M.3
Zhu, W.L.4
Chen, K.X.5
Ma, J.P.6
-
36
-
-
64549131279
-
ABSINTH: a new continuum solvation model for simulations of polypeptides in aqueous solutions
-
Vitalis A., Pappu R.V. ABSINTH: a new continuum solvation model for simulations of polypeptides in aqueous solutions. J. Comput. Chem. 2009, 30:673-699.
-
(2009)
J. Comput. Chem.
, vol.30
, pp. 673-699
-
-
Vitalis, A.1
Pappu, R.V.2
-
37
-
-
54249132105
-
Atomistic simulations of the effects of polyglutamine chain length and solvent quality on conformational equilibria and spontaneous homodimerization
-
Vitalis A., Wang X., Pappu R.V. Atomistic simulations of the effects of polyglutamine chain length and solvent quality on conformational equilibria and spontaneous homodimerization. J. Mol. Biol. 2008, 384:279-297.
-
(2008)
J. Mol. Biol.
, vol.384
, pp. 279-297
-
-
Vitalis, A.1
Wang, X.2
Pappu, R.V.3
-
38
-
-
68949127591
-
Thermodynamics of β-sheet formation in polyglutamine
-
Vitalis A., Lyle N., Pappu R.V. Thermodynamics of β-sheet formation in polyglutamine. Biophys. J. 2009, 97:303-311.
-
(2009)
Biophys. J.
, vol.97
, pp. 303-311
-
-
Vitalis, A.1
Lyle, N.2
Pappu, R.V.3
-
39
-
-
77649271684
-
Modulation of polyglutamine conformations and dimer formation by the N-terminus of Huntingtin
-
Williamson T.E., Vitalis A., Crick S.L., Pappu R.V. Modulation of polyglutamine conformations and dimer formation by the N-terminus of Huntingtin. J. Mol. Biol. 2010, 396:1295-1309.
-
(2010)
J. Mol. Biol.
, vol.396
, pp. 1295-1309
-
-
Williamson, T.E.1
Vitalis, A.2
Crick, S.L.3
Pappu, R.V.4
-
40
-
-
77952335311
-
Net charge per residue modulates conformational ensembles of intrinsically disordered proteins
-
Mao A.H., Crick S.L., Vitalis A., Chicoine C.L., Pappu R.V. Net charge per residue modulates conformational ensembles of intrinsically disordered proteins. Proc. Natl Acad. Sci. USA 2010, 107:8183-8188.
-
(2010)
Proc. Natl Acad. Sci. USA
, vol.107
, pp. 8183-8188
-
-
Mao, A.H.1
Crick, S.L.2
Vitalis, A.3
Chicoine, C.L.4
Pappu, R.V.5
-
41
-
-
0031728016
-
Residual structure in the Alzheimer's disease peptide: probing the origin of a central hydrophobic cluster
-
Zhang S., Casey N., Lee J.P. Residual structure in the Alzheimer's disease peptide: probing the origin of a central hydrophobic cluster. Fold. Des. 1998, 3:413-422.
-
(1998)
Fold. Des.
, vol.3
, pp. 413-422
-
-
Zhang, S.1
Casey, N.2
Lee, J.P.3
-
42
-
-
0033855845
-
The Alzheimer's peptide Aβ adopts a collapsed coil structure in water
-
Zhang S., Iwata K., Lachenmann M.J., Peng J.W., Li S., Stimson E.R., et al. The Alzheimer's peptide Aβ adopts a collapsed coil structure in water. J. Struct. Biol. 2000, 130:130-141.
-
(2000)
J. Struct. Biol.
, vol.130
, pp. 130-141
-
-
Zhang, S.1
Iwata, K.2
Lachenmann, M.J.3
Peng, J.W.4
Li, S.5
Stimson, E.R.6
-
43
-
-
33644817349
-
Scanning cysteine mutagenesis analysis of Aβ-(1-40) amyloid fibrils
-
Shivaprasad S., Wetzel R. Scanning cysteine mutagenesis analysis of Aβ-(1-40) amyloid fibrils. J. Biol. Chem. 2006, 281:993-1000.
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 993-1000
-
-
Shivaprasad, S.1
Wetzel, R.2
-
44
-
-
33644851439
-
The solvent protection of Alzheimer amyloid-β-(1-42) fibrils as determined by solution NMR spectroscopy
-
Olofsson A., Sauer-Eriksson A.E., Öhman A. The solvent protection of Alzheimer amyloid-β-(1-42) fibrils as determined by solution NMR spectroscopy. J. Biol. Chem. 2006, 281:477-483.
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 477-483
-
-
Olofsson, A.1
Sauer-Eriksson, A.E.2
Öhman, A.3
-
45
-
-
33846324298
-
The structure of the Alzheimer amyloid β 10-35 peptide probed through replica-exchange molecular dynamics simulations in explicit solvent
-
Baumketner A., Shea J.E. The structure of the Alzheimer amyloid β 10-35 peptide probed through replica-exchange molecular dynamics simulations in explicit solvent. J. Mol. Biol. 2007, 366:275-285.
-
(2007)
J. Mol. Biol.
, vol.366
, pp. 275-285
-
-
Baumketner, A.1
Shea, J.E.2
-
46
-
-
34547574012
-
Simulation study on the disordered state of an Alzheimer's β amyloid peptide Aβ(12-36) in water consisting of random-structural, β-structural, and helical clusters
-
Ikebe J., Kamiya N., Ito J.I., Shindo H., Higo J. Simulation study on the disordered state of an Alzheimer's β amyloid peptide Aβ(12-36) in water consisting of random-structural, β-structural, and helical clusters. Protein Sci. 2007, 16:1596-1608.
-
(2007)
Protein Sci.
, vol.16
, pp. 1596-1608
-
-
Ikebe, J.1
Kamiya, N.2
Ito, J.I.3
Shindo, H.4
Higo, J.5
-
49
-
-
33746265961
-
N-15 relaxation study of the amyloid β-peptide: structural propensities and persistence length
-
Danielsson J., Andersson A., Jarvet J., Gräslund A. N-15 relaxation study of the amyloid β-peptide: structural propensities and persistence length. Magn. Reson. Chem. 2006, 44:S114-S121.
-
(2006)
Magn. Reson. Chem.
, vol.44
-
-
Danielsson, J.1
Andersson, A.2
Jarvet, J.3
Gräslund, A.4
-
50
-
-
39749113170
-
Persistence lengths and structure factors of wormlike polymers under confinement
-
Cifra P., Benková Z., Bleha T. Persistence lengths and structure factors of wormlike polymers under confinement. J. Phys. Chem. B 2008, 112:1367-1375.
-
(2008)
J. Phys. Chem. B
, vol.112
, pp. 1367-1375
-
-
Cifra, P.1
Benková, Z.2
Bleha, T.3
-
51
-
-
0029994633
-
Arrest of β-amyloid fibril formation by a pentapeptide ligand
-
Tjernberg L.O., Näslund J., Lindqvist F., Johansson J., Karlström A.R., Thyberg J., et al. Arrest of β-amyloid fibril formation by a pentapeptide ligand. J. Biol. Chem. 1996, 271:8545-8548.
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 8545-8548
-
-
Tjernberg, L.O.1
Näslund, J.2
Lindqvist, F.3
Johansson, J.4
Karlström, A.R.5
Thyberg, J.6
-
52
-
-
33644821609
-
A molecular dynamics approach to the structural characterization of amyloid aggregation
-
Cecchini M., Curcio R., Pappalardo M., Melki R., Caflisch A. A molecular dynamics approach to the structural characterization of amyloid aggregation. J. Mol. Biol. 2006, 357:1306-1321.
-
(2006)
J. Mol. Biol.
, vol.357
, pp. 1306-1321
-
-
Cecchini, M.1
Curcio, R.2
Pappalardo, M.3
Melki, R.4
Caflisch, A.5
-
53
-
-
0037020259
-
Kinetic studies of amyloid β-protein fibril assembly
-
Fezoui Y., Teplow D.B. Kinetic studies of amyloid β-protein fibril assembly. J. Biol. Chem. 2002, 277:36948-36954.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 36948-36954
-
-
Fezoui, Y.1
Teplow, D.B.2
-
54
-
-
0020997912
-
Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features
-
Kabsch W., Sander C. Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features. Biopolymers 1983, 22:2577-2637.
-
(1983)
Biopolymers
, vol.22
, pp. 2577-2637
-
-
Kabsch, W.1
Sander, C.2
-
55
-
-
0033863792
-
Solution structures in aqueous SDS micelles of two amyloid β peptides of Aβ(1-28) mutated at the β-secretase cleavage site (K16E, K16F)
-
Poulsen S.A., Watson A.A., Fairlie D.P., Craik D.J. Solution structures in aqueous SDS micelles of two amyloid β peptides of Aβ(1-28) mutated at the β-secretase cleavage site (K16E, K16F). J. Struct. Biol. 2000, 130:142-152.
-
(2000)
J. Struct. Biol.
, vol.130
, pp. 142-152
-
-
Poulsen, S.A.1
Watson, A.A.2
Fairlie, D.P.3
Craik, D.J.4
-
56
-
-
45749097124
-
Investigation of the mechanism of β-amyloid fibril formation by kinetic and thermodynamic analyses
-
Lin M.S., Chen L.Y., Tsai H.T., Wang S.S.S., Chang Y., Higuchi A., et al. Investigation of the mechanism of β-amyloid fibril formation by kinetic and thermodynamic analyses. Langmuir 2008, 24:5802-5808.
-
(2008)
Langmuir
, vol.24
, pp. 5802-5808
-
-
Lin, M.S.1
Chen, L.Y.2
Tsai, H.T.3
Wang, S.S.S.4
Chang, Y.5
Higuchi, A.6
-
57
-
-
42449111198
-
Stabilization of a β-hairpin in monomeric Alzheimer's amyloid-β peptide inhibits amyloid formation
-
Hoyer W., Grönwall C., Jonsson A., Ståhl S., Härd T. Stabilization of a β-hairpin in monomeric Alzheimer's amyloid-β peptide inhibits amyloid formation. Proc. Natl Acad. Sci. USA 2008, 105:5099-5104.
-
(2008)
Proc. Natl Acad. Sci. USA
, vol.105
, pp. 5099-5104
-
-
Hoyer, W.1
Grönwall, C.2
Jonsson, A.3
Ståhl, S.4
Härd, T.5
-
58
-
-
0142125805
-
Translational diffusion measured by PFG-NMR on full length and fragments of the Alzheimer Aβ(1-40) peptide. Determination of hydrodynamic radii of random coil peptides of varying length
-
Danielsson J., Jarvet J., Damberg P., Gräslund A. Translational diffusion measured by PFG-NMR on full length and fragments of the Alzheimer Aβ(1-40) peptide. Determination of hydrodynamic radii of random coil peptides of varying length. Magn. Reson. Chem. 2002, 40:S89-S97.
-
(2002)
Magn. Reson. Chem.
, vol.40
-
-
Danielsson, J.1
Jarvet, J.2
Damberg, P.3
Gräslund, A.4
-
59
-
-
33747652958
-
Distinct early folding and aggregation properties of Alzheimer amyloid-β peptides Aβ40 and Aβ42
-
Chen Y., Glabe C.G. Distinct early folding and aggregation properties of Alzheimer amyloid-β peptides Aβ40 and Aβ42. J. Biol. Chem. 2006, 281:24414-24422.
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 24414-24422
-
-
Chen, Y.1
Glabe, C.G.2
-
60
-
-
0037675760
-
Structural characterisation of the human β-lactalbumin molten globule at high temperature
-
Ramboarina S., Redfield C. Structural characterisation of the human β-lactalbumin molten globule at high temperature. J. Mol. Biol. 2003, 330:1177-1188.
-
(2003)
J. Mol. Biol.
, vol.330
, pp. 1177-1188
-
-
Ramboarina, S.1
Redfield, C.2
-
61
-
-
34249782573
-
Similarities in the thermodynamics and kinetics of aggregation of disease-related Aβ(1-40) peptides
-
Meinhardt J., Tartaglia G.G., Pawar A., Christopeit T., Hortschansky P., Schroeckh V., et al. Similarities in the thermodynamics and kinetics of aggregation of disease-related Aβ(1-40) peptides. Protein Sci. 2007, 16:1214-1222.
-
(2007)
Protein Sci.
, vol.16
, pp. 1214-1222
-
-
Meinhardt, J.1
Tartaglia, G.G.2
Pawar, A.3
Christopeit, T.4
Hortschansky, P.5
Schroeckh, V.6
-
62
-
-
3042584515
-
The role of aromaticity, exposed surface, and dipole moment in determining protein aggregation rates
-
Tartaglia G.G., Cavalli A., Pellarin R., Caflisch A. The role of aromaticity, exposed surface, and dipole moment in determining protein aggregation rates. Protein Sci. 2004, 13:1939-1941.
-
(2004)
Protein Sci.
, vol.13
, pp. 1939-1941
-
-
Tartaglia, G.G.1
Cavalli, A.2
Pellarin, R.3
Caflisch, A.4
-
63
-
-
33751106208
-
Aβ42 is more rigid than Aβ40 at the C-terminus: implications for Aβ aggregation and toxicity
-
Yan Y., Wang C. Aβ42 is more rigid than Aβ40 at the C-terminus: implications for Aβ aggregation and toxicity. J. Mol. Biol. 2006, 364:853-862.
-
(2006)
J. Mol. Biol.
, vol.364
, pp. 853-862
-
-
Yan, Y.1
Wang, C.2
-
64
-
-
33751516713
-
Determining the critical nucleus and mechanism of fibril elongation of the Alzheimer's Aβ(1-40) peptide
-
Fawzi N.L., Okabe Y., Yap E.H., Head-Gordon T. Determining the critical nucleus and mechanism of fibril elongation of the Alzheimer's Aβ(1-40) peptide. J. Mol. Biol. 2007, 365:535-550.
-
(2007)
J. Mol. Biol.
, vol.365
, pp. 535-550
-
-
Fawzi, N.L.1
Okabe, Y.2
Yap, E.H.3
Head-Gordon, T.4
-
65
-
-
33745727173
-
Interpreting the aggregation kinetics of amyloid peptides
-
Pellarin R., Caflisch A. Interpreting the aggregation kinetics of amyloid peptides. J. Mol. Biol. 2006, 360:882-892.
-
(2006)
J. Mol. Biol.
, vol.360
, pp. 882-892
-
-
Pellarin, R.1
Caflisch, A.2
-
66
-
-
0034733023
-
Alzheimer's disease amyloid propagation by a template-dependent dock-lock mechanism
-
Esler W.P., Stimson E.R., Jennings J.M., Vinters H.V., Ghilardi J.R., Lee J.P., et al. Alzheimer's disease amyloid propagation by a template-dependent dock-lock mechanism. Biochemistry 2000, 39:6288-6295.
-
(2000)
Biochemistry
, vol.39
, pp. 6288-6295
-
-
Esler, W.P.1
Stimson, E.R.2
Jennings, J.M.3
Vinters, H.V.4
Ghilardi, J.R.5
Lee, J.P.6
-
67
-
-
35748943830
-
Pathways and intermediates of amyloid fibril formation
-
Pellarin R., Guarnera E., Caflisch A. Pathways and intermediates of amyloid fibril formation. J. Mol. Biol. 2007, 374:917-924.
-
(2007)
J. Mol. Biol.
, vol.374
, pp. 917-924
-
-
Pellarin, R.1
Guarnera, E.2
Caflisch, A.3
-
68
-
-
0035451185
-
Structured disorder and conformational selection
-
Tsai C.J., Ma B., Sham Y.Y., Kumar S., Nussinov R. Structured disorder and conformational selection. Proteins Struct. Funct. Genet. 2001, 44:418-427.
-
(2001)
Proteins Struct. Funct. Genet.
, vol.44
, pp. 418-427
-
-
Tsai, C.J.1
Ma, B.2
Sham, Y.Y.3
Kumar, S.4
Nussinov, R.5
-
69
-
-
0033849965
-
Studies on the in vitro assembly of Aβ 1-40: implications for the search for Aβ fibril formation inhibitors
-
Goldsbury C.S., Wirtz S., Müller S.A., Sunderji S., Wicki P., Aebi U., et al. Studies on the in vitro assembly of Aβ 1-40: implications for the search for Aβ fibril formation inhibitors. J. Struct. Biol. 2000, 130:217-231.
-
(2000)
J. Struct. Biol.
, vol.130
, pp. 217-231
-
-
Goldsbury, C.S.1
Wirtz, S.2
Müller, S.A.3
Sunderji, S.4
Wicki, P.5
Aebi, U.6
-
70
-
-
59649110455
-
Aβ(1-40) fibril polymorphism implies diverse interaction patterns in amyloid fibrils
-
Meinhardt J., Sachse C., Hortschansky P., Grigorieff N., Fändrich M. Aβ(1-40) fibril polymorphism implies diverse interaction patterns in amyloid fibrils. J. Mol. Biol. 2009, 386:869-877.
-
(2009)
J. Mol. Biol.
, vol.386
, pp. 869-877
-
-
Meinhardt, J.1
Sachse, C.2
Hortschansky, P.3
Grigorieff, N.4
Fändrich, M.5
-
71
-
-
77955273305
-
Aβ(1-40) forms five distinct amyloid structures whose β-sheet contents and fibril stabilities are correlated
-
Kodali R., Williams A.D., Chemuru S., Wetzel R. Aβ(1-40) forms five distinct amyloid structures whose β-sheet contents and fibril stabilities are correlated. J. Mol. Biol. 2010, 401:503-517.
-
(2010)
J. Mol. Biol.
, vol.401
, pp. 503-517
-
-
Kodali, R.1
Williams, A.D.2
Chemuru, S.3
Wetzel, R.4
-
72
-
-
30744433878
-
Experimental constraints on quaternary structure in Alzheimer's β-amyloid fibrils
-
Petkova A.T., Yau W.M., Tycko R. Experimental constraints on quaternary structure in Alzheimer's β-amyloid fibrils. Biochemistry 2006, 45:498-512.
-
(2006)
Biochemistry
, vol.45
, pp. 498-512
-
-
Petkova, A.T.1
Yau, W.M.2
Tycko, R.3
-
73
-
-
17644397372
-
Aβ40-lactam(D23/K28) models a conformation highly favorable for nucleation of amyloid
-
Sciarretta K.L., Gordon D.J., Petkova A.T., Tycko R., Meredith S.C. Aβ40-lactam(D23/K28) models a conformation highly favorable for nucleation of amyloid. Biochemistry 2005, 44:6003-6014.
-
(2005)
Biochemistry
, vol.44
, pp. 6003-6014
-
-
Sciarretta, K.L.1
Gordon, D.J.2
Petkova, A.T.3
Tycko, R.4
Meredith, S.C.5
-
74
-
-
2342652177
-
Unique physicochemical profile of β-amyloid peptide variant Aβ 1-40E22G protofibrils: conceivable neuropathogen in arctic mutant carriers
-
Päiviö A., Jarvet J., Gräslund A., Lannfelt L., Westlind-Danielsson A. Unique physicochemical profile of β-amyloid peptide variant Aβ 1-40E22G protofibrils: conceivable neuropathogen in arctic mutant carriers. J. Mol. Biol. 2004, 339:145-159.
-
(2004)
J. Mol. Biol.
, vol.339
, pp. 145-159
-
-
Päiviö, A.1
Jarvet, J.2
Gräslund, A.3
Lannfelt, L.4
Westlind-Danielsson, A.5
-
75
-
-
36749079289
-
Linking folding with aggregation in Alzheimer's β-amyloid peptides
-
Khandogin J., Brooks C.L. Linking folding with aggregation in Alzheimer's β-amyloid peptides. Proc. Natl Acad. Sci. USA 2007, 104:16880-16885.
-
(2007)
Proc. Natl Acad. Sci. USA
, vol.104
, pp. 16880-16885
-
-
Khandogin, J.1
Brooks, C.L.2
-
76
-
-
35949020425
-
Replica Monte Carlo simulation of spin-glasses
-
Swendsen R.H., Wang J.S. Replica Monte Carlo simulation of spin-glasses. Phys. Rev. Lett. 1986, 57:2607-2609.
-
(1986)
Phys. Rev. Lett.
, vol.57
, pp. 2607-2609
-
-
Swendsen, R.H.1
Wang, J.S.2
-
77
-
-
0001098882
-
Local deformations of polymers with nonplanar rigid main-chain internal coordinates
-
Dinner A.R. Local deformations of polymers with nonplanar rigid main-chain internal coordinates. J. Comput. Chem. 2000, 21:1132-1144.
-
(2000)
J. Comput. Chem.
, vol.21
, pp. 1132-1144
-
-
Dinner, A.R.1
-
78
-
-
0035826575
-
Monte Carlo update for chain molecules: biased Gaussian steps in torsional space
-
Favrin G., Irbäck A., Sjunnesson F. Monte Carlo update for chain molecules: biased Gaussian steps in torsional space. J. Chem. Phys. 2001, 114:8154-8158.
-
(2001)
J. Chem. Phys.
, vol.114
, pp. 8154-8158
-
-
Favrin, G.1
Irbäck, A.2
Sjunnesson, F.3
-
79
-
-
84986519238
-
The weighted histogram analysis method for free-energy calculations on biomolecules: I. The method
-
Kumar S., Rosenberg J.S., Bouzida D., Swendsen R.H., Kollman P.A. The weighted histogram analysis method for free-energy calculations on biomolecules: I. The method. J. Comput. Chem. 1992, 13:1011-1021.
-
(1992)
J. Comput. Chem.
, vol.13
, pp. 1011-1021
-
-
Kumar, S.1
Rosenberg, J.S.2
Bouzida, D.3
Swendsen, R.H.4
Kollman, P.A.5
-
80
-
-
0029633155
-
The calculation of the potential of mean force using computer simulations
-
Roux B. The calculation of the potential of mean force using computer simulations. Comput. Phys. Commun. 1995, 91:275-282.
-
(1995)
Comput. Phys. Commun.
, vol.91
, pp. 275-282
-
-
Roux, B.1
-
81
-
-
34548757409
-
Quantitative characterization of intrinsic disorder in polyglutamine: insights from analysis based on polymer theories
-
Vitalis A., Wang X.L., Pappu R.V. Quantitative characterization of intrinsic disorder in polyglutamine: insights from analysis based on polymer theories. Biophys. J. 2007, 93:1923-1937.
-
(2007)
Biophys. J.
, vol.93
, pp. 1923-1937
-
-
Vitalis, A.1
Wang, X.L.2
Pappu, R.V.3
-
82
-
-
35748935079
-
Wordom: a program for efficient analysis of molecular dynamics simulations
-
Seeber M., Cecchini M., Rao F., Settanni G., Caflisch A. Wordom: a program for efficient analysis of molecular dynamics simulations. Bioinformatics 2007, 23:2625-2627.
-
(2007)
Bioinformatics
, vol.23
, pp. 2625-2627
-
-
Seeber, M.1
Cecchini, M.2
Rao, F.3
Settanni, G.4
Caflisch, A.5
|