-
1
-
-
0028803509
-
Vascular endothelial growth factor acts as a survival factor for newly formed retinal vessels and has implications for retinopathy of prematurity
-
Alon,T. et al. (1995) Vascular endothelial growth factor acts as a survival factor for newly formed retinal vessels and has implications for retinopathy of prematurity. Nat. Med., 1, 1024-1028.
-
(1995)
Nat. Med.
, vol.1
, pp. 1024-1028
-
-
Alon, T.1
-
2
-
-
9144257886
-
The Pfam protein families database
-
Bateman,A. et al. (2004) The Pfam protein families database. Nucleic Acids Res., 32, D138-D141.
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Bateman, A.1
-
3
-
-
19944376457
-
Global identification of human transcribed sequences with genome tiling arrays
-
Bertone,P. et al. (2004) Global identification of human transcribed sequences with genome tiling arrays. Science, 306, 2242-2246.
-
(2004)
Science
, vol.306
, pp. 2242-2246
-
-
Bertone, P.1
-
4
-
-
34250305146
-
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
-
Birney,E. et al. (2007) Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature, 447, 799-816.
-
(2007)
Nature
, vol.447
, pp. 799-816
-
-
Birney, E.1
-
5
-
-
33745152719
-
Genome-wide computational prediction of transcriptional regulatory modules reveals new insights into human gene expression
-
Blanchette,M. et al. (2006) Genome-wide computational prediction of transcriptional regulatory modules reveals new insights into human gene expression. Genome Res., 16, 656-668.
-
(2006)
Genome Res.
, vol.16
, pp. 656-668
-
-
Blanchette, M.1
-
6
-
-
10744226888
-
Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs
-
Cawley,S. et al. (2004) Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs. Cell, 116, 499-509.
-
(2004)
Cell
, vol.116
, pp. 499-509
-
-
Cawley, S.1
-
7
-
-
0030781996
-
Crx, a novel Otx-like paired-homeodomain protein, binds to and transactivates photoreceptor cell-specific genes
-
Chen,S. et al. (1997) Crx, a novel Otx-like paired-homeodomain protein, binds to and transactivates photoreceptor cell-specific genes. Neuron, 19, 1017-1030.
-
(1997)
Neuron
, vol.19
, pp. 1017-1030
-
-
Chen, S.1
-
8
-
-
0033616582
-
Abnormal photoresponses and light-induced apoptosis in rods lacking rhodopsin kinase
-
Chen,C.K. et al. (1999) Abnormal photoresponses and light-induced apoptosis in rods lacking rhodopsin kinase. Proc. Natl Acad. Sci. USA, 96, 3718-3722.
-
(1999)
Proc. Natl Acad. Sci. USA
, vol.96
, pp. 3718-3722
-
-
Chen, C.K.1
-
9
-
-
12144269981
-
The rod photoreceptor-specific nuclear receptor Nr2e3 represses transcription of multiple cone-specific genes
-
Chen,J. et al. (2005) The rod photoreceptor-specific nuclear receptor Nr2e3 represses transcription of multiple cone-specific genes. J. Neurosci., 25, 118-129.
-
(2005)
J. Neurosci.
, vol.25
, pp. 118-129
-
-
Chen, J.1
-
10
-
-
64149091916
-
Neural progenitor cell death is induced by extracellular ATP via ligation of P2X7 receptor
-
Delarasse,C. et al. (2009) Neural progenitor cell death is induced by extracellular ATP via ligation of P2X7 receptor. J .Neurochem., 109, 846-857.
-
(2009)
J. Neurochem.
, vol.109
, pp. 846-857
-
-
Delarasse, C.1
-
11
-
-
2342435295
-
Mapping Gene Ontology to proteins based on protein-protein interaction data
-
Deng,M. et al. (2004) Mapping Gene Ontology to proteins based on protein-protein interaction data. Bioinformatics, 20, 895-902.
-
(2004)
Bioinformatics
, vol.20
, pp. 895-902
-
-
Deng, M.1
-
12
-
-
0033736476
-
Genetic network inference: from co-expression clustering to reverse engineering
-
D'Haeseleer,P. et al. (2000) Genetic network inference: from co-expression clustering to reverse engineering. Bioinformatics, 16, 707-726.
-
(2000)
Bioinformatics
, vol.16
, pp. 707-726
-
-
D'Haeseleer, P.1
-
13
-
-
0029902034
-
Missense mutation in the gene encoding the alpha subunit of rod transducin in the Nougaret form of congenital stationary night blindness
-
Dryja,T.P. et al. (1996) Missense mutation in the gene encoding the alpha subunit of rod transducin in the Nougaret form of congenital stationary night blindness. Nat. Genet., 13, 358-360.
-
(1996)
Nat. Genet.
, vol.13
, pp. 358-360
-
-
Dryja, T.P.1
-
14
-
-
0032441150
-
Cluster analysis and display of genome-wide expression patterns
-
Eisen,M.B. et al. (1998) Cluster analysis and display of genome-wide expression patterns. Proc. Natl Acad. Sci. USA, 95, 14863-14868.
-
(1998)
Proc. Natl Acad. Sci. USA
, vol.95
, pp. 14863-14868
-
-
Eisen, M.B.1
-
15
-
-
38349136263
-
Angiopoietin-2 deficiency decelerates age-dependent vascular changes in the mouse retina
-
Feng,Y. et al. (2008) Angiopoietin-2 deficiency decelerates age-dependent vascular changes in the mouse retina. Cell Physiol. Biochem., 21, 129-136.
-
(2008)
Cell Physiol. Biochem.
, vol.21
, pp. 129-136
-
-
Feng, Y.1
-
16
-
-
33646884801
-
Reconstruction of a functional human gene network, with an application for prioritizing positional candidate genes
-
Franke,L. et al. (2006) Reconstruction of a functional human gene network, with an application for prioritizing positional candidate genes. Am. J. Hum. Genet., 78, 1011-1025.
-
(2006)
Am. J. Hum. Genet.
, vol.78
, pp. 1011-1025
-
-
Franke, L.1
-
18
-
-
34547140875
-
The human disease network
-
Goh,K.I. et al. (2007) The human disease network. Proc. Natl Acad. Sci. USA, 104, 8685-8690.
-
(2007)
Proc. Natl Acad. Sci. USA
, vol.104
, pp. 8685-8690
-
-
Goh, K.I.1
-
19
-
-
52949087576
-
Agenomewide functional network for the laboratory mouse
-
Guan,Y. et al. (2008)Agenomewide functional network for the laboratory mouse. PLoS Comput. Biol., 4, e1000165.
-
(2008)
PLoS Comput. Biol.
, vol.4
-
-
Guan, Y.1
-
20
-
-
16544392171
-
Essential role of Ca2+-binding protein 4, a Cav1.4 channel regulator, in photoreceptor synaptic function
-
Haeseleer,F. et al. (2004) Essential role of Ca2+-binding protein 4, a Cav1.4 channel regulator, in photoreceptor synaptic function. Nat. Neurosci., 7, 1079-1087.
-
(2004)
Nat. Neurosci.
, vol.7
, pp. 1079-1087
-
-
Haeseleer, F.1
-
21
-
-
17844396017
-
Transcribed processed pseudogenes in the human genome: an intermediate form of expressed retrosequence lacking protein-coding ability
-
Harrison,P.M. et al. (2005) Transcribed processed pseudogenes in the human genome: an intermediate form of expressed retrosequence lacking protein-coding ability. Nucleic Acids Res., 33, 2374-2383.
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 2374-2383
-
-
Harrison, P.M.1
-
22
-
-
39449091111
-
The cis-regulatory logic of the mammalian photoreceptor transcriptional network
-
Hsiau,T.H. et al. (2007) The cis-regulatory logic of the mammalian photoreceptor transcriptional network. PLoS One, 2, e643.
-
(2007)
PLoS One
, vol.2
-
-
Hsiau, T.H.1
-
23
-
-
41649119247
-
Protein networks in disease
-
Ideker,T. and Sharan,R. (2008) Protein networks in disease. Genome Res., 18, 644-652.
-
(2008)
Genome Res.
, vol.18
, pp. 644-652
-
-
Ideker, T.1
Sharan, R.2
-
24
-
-
33846827273
-
Targeted inactivation of synaptic HRG4 (UNC119) causes dysfunction in the distal photoreceptor and slow retinal degeneration, revealing a new function
-
Ishiba,Y. et al. (2007) Targeted inactivation of synaptic HRG4 (UNC119) causes dysfunction in the distal photoreceptor and slow retinal degeneration, revealing a new function. Exp. Eye Res., 84, 473-485.
-
(2007)
Exp. Eye Res.
, vol.84
, pp. 473-485
-
-
Ishiba, Y.1
-
25
-
-
61849086851
-
Essential roles of dopamine D4 receptors and the type 1 adenylyl cyclase in photic control of cyclic AMP in photoreceptor cells
-
Jackson,C.R. et al. (2009) Essential roles of dopamine D4 receptors and the type 1 adenylyl cyclase in photic control of cyclic AMP in photoreceptor cells. J. Neurochem., 109, 148-157.
-
(2009)
J. Neurochem.
, vol.109
, pp. 148-157
-
-
Jackson, C.R.1
-
26
-
-
0142052944
-
A Bayesian networks approach for predicting protein-protein interactions from genomic data
-
Jansen,R. et al. (2003) A Bayesian networks approach for predicting protein-protein interactions from genomic data. Science, 302, 449-453.
-
(2003)
Science
, vol.302
, pp. 449-453
-
-
Jansen, R.1
-
27
-
-
0035799707
-
Lethality and centrality in protein networks
-
Jeong,H. et al. (2001) Lethality and centrality in protein networks. Nature, 411, 41-42.
-
(2001)
Nature
, vol.411
, pp. 41-42
-
-
Jeong, H.1
-
28
-
-
23844519339
-
Ahigh-resolution map of active promoters in the human genome
-
Kim,T.H. et al. (2005)Ahigh-resolution map of active promoters in the human genome. Nature, 436, 876-880.
-
(2005)
Nature
, vol.436
, pp. 876-880
-
-
Kim, T.H.1
-
29
-
-
47549098627
-
Inferring mouse gene functions from genomic-scale data using a combined functional network/classification strategy
-
Kim,W.K. et al. (2008) Inferring mouse gene functions from genomic-scale data using a combined functional network/classification strategy. Genome Biol., 9 (Suppl. 1), S5.
-
(2008)
Genome Biol.
, vol.9
, Issue.SUPPL. 1
-
-
Kim, W.K.1
-
30
-
-
33947095027
-
A human phenome-interactome network of protein complexes implicated in genetic disorders
-
Lage,K. et al. (2007) A human phenome-interactome network of protein complexes implicated in genetic disorders. Nat. Biotechnol., 25, 309-316.
-
(2007)
Nat. Biotechnol.
, vol.25
, pp. 309-316
-
-
Lage, K.1
-
31
-
-
3042514191
-
Coexpression analysis of human genes across many microarray data sets
-
Lee,H.K. et al. (2004a) Coexpression analysis of human genes across many microarray data sets. Genome Res., 14, 1085-1094.
-
(2004)
Genome Res.
, vol.14
, pp. 1085-1094
-
-
Lee, H.K.1
-
32
-
-
9444239213
-
A probabilistic functional network of yeast genes
-
Lee,I. et al. (2004b) A probabilistic functional network of yeast genes. Science, 306, 1555-1558.
-
(2004)
Science
, vol.306
, pp. 1555-1558
-
-
Lee, I.1
-
33
-
-
1542271409
-
Predicting protein function from protein/protein interaction data: a probabilistic approach
-
Letovsky,S. and Kasif,S. (2003) Predicting protein function from protein/protein interaction data: a probabilistic approach. Bioinformatics, 19 (Suppl. 1), i197-i204.
-
(2003)
Bioinformatics
, vol.19
, Issue.SUPPL. 1
-
-
Letovsky, S.1
Kasif, S.2
-
34
-
-
67349241408
-
P2X7 nucleotide receptor plays an important role in callus remodeling during fracture repair
-
Li,J. et al. (2009) P2X7 nucleotide receptor plays an important role in callus remodeling during fracture repair. Calcif. Tissue Int., 84, 405-412.
-
(2009)
Calcif. Tissue Int.
, vol.84
, pp. 405-412
-
-
Li, J.1
-
35
-
-
4644256600
-
AIPL1, the protein that is defective in Leber congenital amaurosis, is essential for the biosynthesis of retinal rod cGMP phosphodiesterase
-
Liu,X. et al. (2004) AIPL1, the protein that is defective in Leber congenital amaurosis, is essential for the biosynthesis of retinal rod cGMP phosphodiesterase. Proc. Natl Acad. Sci. USA, 101, 13903-13908.
-
(2004)
Proc. Natl Acad. Sci. USA
, vol.101
, pp. 13903-13908
-
-
Liu, X.1
-
36
-
-
0037480738
-
Investigating semantic similarity measures across the Gene Ontology: the relationship between sequence and annotation
-
Lord,P.W. et al. (2003) Investigating semantic similarity measures across the Gene Ontology: the relationship between sequence and annotation. Bioinformatics, 19, 1275-1283.
-
(2003)
Bioinformatics
, vol.19
, pp. 1275-1283
-
-
Lord, P.W.1
-
37
-
-
22244447463
-
Assessing the limits of genomic data integration for predicting protein networks
-
Lu,L.J. et al. (2005) Assessing the limits of genomic data integration for predicting protein networks. Genome Res., 15, 945-953.
-
(2005)
Genome Res.
, vol.15
, pp. 945-953
-
-
Lu, L.J.1
-
38
-
-
0035734382
-
Nrl is required for rod photoreceptor development
-
Mears,A.J. et al. (2001) Nrl is required for rod photoreceptor development. Nat. Genet., 29, 447-452.
-
(2001)
Nat. Genet.
, vol.29
, pp. 447-452
-
-
Mears, A.J.1
-
39
-
-
37449011204
-
In vitro and in vivo evidence for a role of the P2X7 receptor in the release of IL-1 beta in the murine brain
-
Mingam,R. et al. (2008) In vitro and in vivo evidence for a role of the P2X7 receptor in the release of IL-1 beta in the murine brain. Brain Behav. Immun., 22, 234-244.
-
(2008)
Brain Behav. Immun.
, vol.22
, pp. 234-244
-
-
Mingam, R.1
-
40
-
-
34047093338
-
Angiopoietin 1 (Ang-1), angiopoietin 2 (Ang-2) and Tie-2 (a receptor tyrosine kinase) concentrations in peripheral blood of patients with thyroid cancers
-
Niedzwiecki,S. et al. (2006) Angiopoietin 1 (Ang-1), angiopoietin 2 (Ang-2) and Tie-2 (a receptor tyrosine kinase) concentrations in peripheral blood of patients with thyroid cancers. Cytokine, 36, 291-295.
-
(2006)
Cytokine
, vol.36
, pp. 291-295
-
-
Niedzwiecki, S.1
-
41
-
-
0033518256
-
Synexpression groups in eukaryotes
-
Niehrs,C. and Pollet,N. (1999) Synexpression groups in eukaryotes. Nature, 402, 483-487.
-
(1999)
Nature
, vol.402
, pp. 483-487
-
-
Niehrs, C.1
Pollet, N.2
-
42
-
-
33747035889
-
Predicting disease genes using protein-protein interactions
-
Oti,M. et al. (2006) Predicting disease genes using protein-protein interactions. J. Med. Genet., 43, 691-698.
-
(2006)
J. Med. Genet.
, vol.43
, pp. 691-698
-
-
Oti, M.1
-
43
-
-
47549116997
-
A critical assessment of Mus musculus gene function prediction using integrated genomic evidence
-
Pena-Castillo,L. et al. (2008) A critical assessment of Mus musculus gene function prediction using integrated genomic evidence. Genome Biol., 9 (Suppl. 1), S2.
-
(2008)
Genome Biol.
, vol.9
, Issue.SUPPL. 1
-
-
Pena-Castillo, L.1
-
44
-
-
36549005053
-
Angiopoietin modulation of vascular endothelial growth factor: effects on retinal endothelial cell permeability
-
Peters,S. et al. (2007) Angiopoietin modulation of vascular endothelial growth factor: effects on retinal endothelial cell permeability. Cytokine, 40, 144-150.
-
(2007)
Cytokine
, vol.40
, pp. 144-150
-
-
Peters, S.1
-
45
-
-
35349024501
-
Network modeling links breast cancer susceptibility and centrosome dysfunction
-
Pujana,M.A. et al. (2007) Network modeling links breast cancer susceptibility and centrosome dysfunction. Nat. Genet., 39, 1338-1349.
-
(2007)
Nat. Genet.
, vol.39
, pp. 1338-1349
-
-
Pujana, M.A.1
-
46
-
-
20444500207
-
Identification of regulatory targets of tissue-specific transcription factors: application to retina-specific gene regulation
-
Qian,J. et al. (2005) Identification of regulatory targets of tissue-specific transcription factors: application to retina-specific gene regulation. Nucleic Acids Res., 33, 3479-3491.
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 3479-3491
-
-
Qian, J.1
-
47
-
-
4444336823
-
GeneCluster 2.0: an advanced toolset for bioarray analysis
-
Reich,M. et al. (2004) GeneCluster 2.0: an advanced toolset for bioarray analysis. Bioinformatics, 20, 1797-1798.
-
(2004)
Bioinformatics
, vol.20
, pp. 1797-1798
-
-
Reich, M.1
-
48
-
-
67649339374
-
Aberrant function and structure of retinal ribbon synapses in the absence of complexin 3 and complexin 4
-
Reim,K. et al. (2009) Aberrant function and structure of retinal ribbon synapses in the absence of complexin 3 and complexin 4. J. Cell Sci., 122, 1352-1361.
-
(2009)
J. Cell Sci.
, vol.122
, pp. 1352-1361
-
-
Reim, K.1
-
49
-
-
77649274539
-
Panky, a novel photoreceptor-specific ankyrin repeat protein, is a transcriptional cofactor that suppresses CRX-regulated photoreceptor genes
-
Sanuki,R. et al. (2010) Panky, a novel photoreceptor-specific ankyrin repeat protein, is a transcriptional cofactor that suppresses CRX-regulated photoreceptor genes. FEBS Lett., 584, 753-758.
-
(2010)
FEBS Lett.
, vol.584
, pp. 753-758
-
-
Sanuki, R.1
-
50
-
-
0030201119
-
Gene structure and chromosome localization to 7q21.3 of the human rod photoreceptor transducin gamma-subunit gene (GNGT1)
-
Scherer,S.W. et al. (1996) Gene structure and chromosome localization to 7q21.3 of the human rod photoreceptor transducin gamma-subunit gene (GNGT1). Genomics, 35, 241-243.
-
(1996)
Genomics
, vol.35
, pp. 241-243
-
-
Scherer, S.W.1
-
51
-
-
0036276366
-
Mutated alleles of the rod and cone Na-Ca+K-exchanger genes in patients with retinal diseases
-
Sharon,D. et al. (2002) Mutated alleles of the rod and cone Na-Ca+K-exchanger genes in patients with retinal diseases. Invest. Ophthalmol. Vis. Sci., 43, 1971-1979.
-
(2002)
Invest. Ophthalmol. Vis. Sci.
, vol.43
, pp. 1971-1979
-
-
Sharon, D.1
-
52
-
-
0031876618
-
Refined mapping of the gene encoding the p127 kDa UV-damaged DNA-binding protein (DDB1) within 11q12-q13.1 and its exclusion in Best's vitelliform macular dystrophy
-
Stohr,H. et al. (1998) Refined mapping of the gene encoding the p127 kDa UV-damaged DNA-binding protein (DDB1) within 11q12-q13.1 and its exclusion in Best's vitelliform macular dystrophy. Eur. J. Hum. Genet., 6, 400-405.
-
(1998)
Eur. J. Hum. Genet.
, vol.6
, pp. 400-405
-
-
Stohr, H.1
-
53
-
-
11144358198
-
A gene atlas of the mouse and human protein-encoding transcriptomes
-
Su,A.I. et al. (2004) A gene atlas of the mouse and human protein-encoding transcriptomes. Proc. Natl Acad. Sci. USA, 101, 6062-6067.
-
(2004)
Proc. Natl Acad. Sci. USA
, vol.101
, pp. 6062-6067
-
-
Su, A.I.1
-
54
-
-
66149097425
-
In vitro study of the effects of lens extract on rat retinal neuron survival and neurite outgrowth
-
Wang,Y. et al. (2009) In vitro study of the effects of lens extract on rat retinal neuron survival and neurite outgrowth. Ophthalmic Res., 42, 29-35.
-
(2009)
Ophthalmic Res.
, vol.42
, pp. 29-35
-
-
Wang, Y.1
-
55
-
-
0346799108
-
Prediction of protein function from protein sequence and structure
-
Whisstock,J.C. and Lesk,A.M. (2003) Prediction of protein function from protein sequence and structure. Q. Rev. Biophys., 36, 307-340.
-
(2003)
Q. Rev. Biophys.
, vol.36
, pp. 307-340
-
-
Whisstock, J.C.1
Lesk, A.M.2
-
56
-
-
66149103249
-
alpha-Crystallin downregulates the expression of TNF-alpha and iNOS by activated rat retinal microglia in vitro and in vivo
-
Wu,N. et al. (2009) alpha-Crystallin downregulates the expression of TNF-alpha and iNOS by activated rat retinal microglia in vitro and in vivo. Ophthalmic Res., 42, 21-28.
-
(2009)
Ophthalmic Res.
, vol.42
, pp. 21-28
-
-
Wu, N.1
-
57
-
-
0142056039
-
A comprehensive analysis of the expression of crystallins in mouse retina
-
Xi,J. et al. (2003) A comprehensive analysis of the expression of crystallins in mouse retina. Mol. Vis., 9, 410-419.
-
(2003)
Mol. Vis.
, vol.9
, pp. 410-419
-
-
Xi, J.1
-
58
-
-
33750217984
-
Computational analysis of tissue-specific combinatorial gene regulation: predicting interaction between transcription factors in human tissues
-
Yu,X. et al. (2006) Computational analysis of tissue-specific combinatorial gene regulation: predicting interaction between transcription factors in human tissues. Nucleic Acids Res., 34, 4925-4936.
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. 4925-4936
-
-
Yu, X.1
-
59
-
-
33749005104
-
Mutations in CABP4, the gene encoding the Ca2+-binding protein 4, cause autosomal recessive night blindness
-
Zeitz,C. et al. (2006) Mutations in CABP4, the gene encoding the Ca2+-binding protein 4, cause autosomal recessive night blindness. Am. J. Hum. Genet., 79, 657-667.
-
(2006)
Am. J. Hum. Genet.
, vol.79
, pp. 657-667
-
-
Zeitz, C.1
-
60
-
-
33947219859
-
The functional landscape of mouse gene expression
-
Zhang,W. et al. (2004) The functional landscape of mouse gene expression. J. Biol., 3, 21.
-
(2004)
J. Biol.
, vol.3
, pp. 21
-
-
Zhang, W.1
|