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Volumn 470, Issue C, 2010, Pages 487-507

Experimental evolution in yeast: A practical guide

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FUNGAL DNA;

EID: 77956016288     PISSN: 00766879     EISSN: None     Source Type: Book Series    
DOI: 10.1016/S0076-6879(10)70019-7     Document Type: Article
Times cited : (15)

References (51)
  • 1
    • 2942659270 scopus 로고    scopus 로고
    • Microbial evolution in laboratory environments
    • Adams, J. (2004). Microbial evolution in laboratory environments. Res. Microbiol. 155, 311-318.
    • (2004) Res. Microbiol. , vol.155 , pp. 311-318
    • Adams, J.1
  • 2
    • 0031416546 scopus 로고    scopus 로고
    • Suitability of replacement markers for functional analysis studies in Saccharomyces cerevisiae
    • Baganz, F., Hayes, A., Marren, D., Gardner, D. C., andOliver, S. G. (1997). Suitability of replacement markers for functional analysis studies in Saccharomyces cerevisiae. Yeast 13, 1563-1573.
    • (1997) Yeast , vol.13 , pp. 1563-1573
    • Baganz, F.1    Hayes, A.2    Marren, D.3    Gardner, D.C.4    Oliver, S.G.5
  • 3
    • 0346991749 scopus 로고    scopus 로고
    • Evolution in Saccharomyces cerevisiae: Identification of mutations increasing fitness in laboratory populations
    • Blanc, V. M., and Adams, J. (2003). Evolution in Saccharomyces cerevisiae: Identification of mutations increasing fitness in laboratory populations. Genetics 165, 975-983.
    • (2003) Genetics , vol.165 , pp. 975-983
    • Blanc, V.M.1    Adams, J.2
  • 4
    • 33746401568 scopus 로고    scopus 로고
    • Mapping novel traits by array-assisted bulk segregant analysis in Saccharomyces cerevisiae
    • Brauer, M. J., Christianson, C. M., Pai, D. A., andDunham, M. J. (2006). Mapping novel traits by array-assisted bulk segregant analysis in Saccharomyces cerevisiae. Genetics 173, 1813-1816.
    • (2006) Genetics , vol.173 , pp. 1813-1816
    • Brauer, M.J.1    Christianson, C.M.2    Pai, D.A.3    Dunham, M.J.4
  • 6
    • 0031904230 scopus 로고    scopus 로고
    • Multiple duplications of yeast hexose transport genes in response to selection in a glucose-limited environment
    • Brown, C. J., Todd, K. M., andRosenzweig, R. F. (1998). Multiple duplications of yeast hexose transport genes in response to selection in a glucose-limited environment. Mol. Biol. Evol. 15, 931-942.
    • (1998) Mol. Biol. Evol. , vol.15 , pp. 931-942
    • Brown, C.J.1    Todd, K.M.2    Rosenzweig, R.F.3
  • 7
    • 0041883396 scopus 로고
    • Microbial selection
    • Bryson, V., andSzybalski, W. (1952). Microbial selection. Science 116, 45-51.
    • (1952) Science , vol.116 , pp. 45-51
    • Bryson, V.1    Szybalski, W.2
  • 11
    • 0034012926 scopus 로고    scopus 로고
    • The effect of vitamins and amino acids on glucose uptake in aerobic chemostat cultures of three Saccharomyces cerevisiae strains
    • de Kock, S. H., du Preez, J. C., and Kilian, S. G. (2000). The effect of vitamins and amino acids on glucose uptake in aerobic chemostat cultures of three Saccharomyces cerevisiae strains. Syst. Appl. Microbiol. 23, 41-46.
    • (2000) Syst. Appl. Microbiol. , vol.23 , pp. 41-46
    • De Kock, S.H.1    Du Preez, J.C.2    Kilian, S.G.3
  • 12
    • 33847256353 scopus 로고    scopus 로고
    • The speed of evolution and maintenance of variation in asexual populations
    • Desai, M. M., Fisher, D. S., andMurray, A. W. (2007). The speed of evolution and maintenance of variation in asexual populations. Curr. Biol. 17, 385-394.
    • (2007) Curr. Biol. , vol.17 , pp. 385-394
    • Desai, M.M.1    Fisher, D.S.2    Murray, A.W.3
  • 15
    • 0038441327 scopus 로고    scopus 로고
    • Evolution experiments with microorganisms: The dynamics and genetic bases of adaptation
    • Elena, S. F., andLenski, R. E. (2003). Evolution experiments with microorganisms: The dynamics and genetic bases of adaptation. Nat. Rev. Genet. 4, 457-469.
    • (2003) Nat. Rev. Genet. , vol.4 , pp. 457-469
    • Elena, S.F.1    Lenski, R.E.2
  • 16
    • 0033578424 scopus 로고    scopus 로고
    • Systematic changes in gene expression patterns following adaptive evolution in yeast
    • Ferea, T. L., Botstein, D., Brown, P. O., andRosenzweig, R. F. (1999). Systematic changes in gene expression patterns following adaptive evolution in yeast. Proc. Natl. Acad. Sci. USA 96, 9721-9726.
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 9721-9726
    • Ferea, T.L.1    Botstein, D.2    Brown, P.O.3    Rosenzweig, R.F.4
  • 17
    • 0015258586 scopus 로고
    • Directed evolution of metabolic pathways in microbial populations. I. Modification of the acid phosphatase pH optimum in S. cerevisiae
    • Francis, J. C., and Hansche, P. E. (1972). Directed evolution of metabolic pathways in microbial populations. I. Modification of the acid phosphatase pH optimum in S. cerevisiae. Genetics 70, 59-73.
    • (1972) Genetics , vol.70 , pp. 59-73
    • Francis, J.C.1    Hansche, P.E.2
  • 18
    • 33746022362 scopus 로고    scopus 로고
    • Phenotypic plasticity and experimental evolution
    • Garland, T., and Kelly, S. A. (2006). Phenotypic plasticity and experimental evolution. J. Exp. Biol. 209, 2344-2361.
    • (2006) J. Exp. Biol. , vol.209 , pp. 2344-2361
    • Garland, T.1    Kelly, S.A.2
  • 19
    • 33645464048 scopus 로고    scopus 로고
    • Genome-wide detection of polymorphisms at nucleotide resolution with a single DNA microarray
    • Gresham, D., Ruderfer, D. M., Pratt, S. C., Schacherer, J., Dunham, M. J., Botstein, D., andKruglyak, L. (2006). Genome-wide detection of polymorphisms at nucleotide resolution with a single DNA microarray. Science 311, 1932-1936.
    • (2006) Science , vol.311 , pp. 1932-1936
    • Gresham, D.1    Ruderfer, D.M.2    Pratt, S.C.3    Schacherer, J.4    Dunham, M.J.5    Botstein, D.6    Kruglyak, L.7
  • 20
    • 40849097774 scopus 로고    scopus 로고
    • Comparing whole genomes using DNA microarrays
    • Gresham, D., Dunham, M. J., andBotstein, D. (2008). Comparing whole genomes using DNA microarrays. Nat. Rev. Genet. 9, 291-302.
    • (2008) Nat. Rev. Genet. , vol.9 , pp. 291-302
    • Gresham, D.1    Dunham, M.J.2    Botstein, D.3
  • 22
    • 24044453695 scopus 로고    scopus 로고
    • A microfluidic chemostat for experiments with bacterial and yeast cells
    • DOI 10.1038/nmeth784
    • Groisman, A., Lobo, C., Cho, H., Campbell, J. K., Dufour, Y. S., Stevens, A. M., andLevchenko, A. (2005). A microfluidic chemostat for experiments with bacterial and yeast cells. Nat. Methods 2, 685-689. (Pubitemid 41223095)
    • (2005) Nature Methods , vol.2 , Issue.9 , pp. 685-689
    • Groisman, A.1    Lobo, C.2    Cho, H.3    Campbell, J.K.4    Dufour, Y.S.5    Stevens, A.M.6    Levchenko, A.7
  • 23
    • 0017851869 scopus 로고
    • Gene duplication in Saccharomyces cerevisiae
    • Hansche, P. E., Beres, V., andLange, P. (1978). Gene duplication in Saccharomyces cerevisiae. Genetics 88, 673-687.
    • (1978) Genetics , vol.88 , pp. 673-687
    • Hansche, P.E.1    Beres, V.2    Lange, P.3
  • 24
    • 0035991154 scopus 로고    scopus 로고
    • Hybridization array technology coupled with chemostat culture: Tools to interrogate gene expression in Saccharomyces cerevisiae
    • Hayes, A., Zhang, N., Wu, J. Y., Butler, P. R., Hauser, N. C., Hoheisel, J. D., Lim, F. L., Sharrocks, A. D., andOliver, S. G. (2002). Hybridization array technology coupled with chemostat culture: Tools to interrogate gene expression in Saccharomyces cerevisiae. Methods 26, 281-290.
    • (2002) Methods , vol.26 , pp. 281-290
    • Hayes, A.1    Zhang, N.2    Wu, J.Y.3    Butler, P.R.4    Hauser, N.C.5    Hoheisel, J.D.6    Lim, F.L.7    Sharrocks, A.D.8    Oliver, S.G.9
  • 25
    • 33751066925 scopus 로고    scopus 로고
    • Ammonium toxicity and potassium limitation in yeast
    • Hess, D. C., Lu, W., Rabinowitz, J. D., andBotstein, D. (2006). Ammonium toxicity and potassium limitation in yeast. PLoS Biol. 4, e351.
    • (2006) PLoS Biol. , vol.4
    • Hess, D.C.1    Lu, W.2    Rabinowitz, J.D.3    Botstein, D.4
  • 26
    • 56749107039 scopus 로고    scopus 로고
    • Molecular characterization of clonal interference during adaptive evolution in asexual populations of Saccharomyces cerevisiae
    • Kao, K. C., andSherlock, G. (2008). Molecular characterization of clonal interference during adaptive evolution in asexual populations of Saccharomyces cerevisiae. Nat. Genet. 40, 1499-1504.
    • (2008) Nat. Genet. , vol.40 , pp. 1499-1504
    • Kao, K.C.1    Sherlock, G.2
  • 28
    • 0037238176 scopus 로고    scopus 로고
    • Domestication of wild Saccharomyces cerevisiae is accompanied by changes in gene expression and colony morphology
    • Kuthan, M., Devaux, F., Janderova, B., Slaninova, I., Jacq, C., andPalkova, Z. (2003). Domestication of wild Saccharomyces cerevisiae is accompanied by changes in gene expression and colony morphology. Mol. Microbiol. 47, 745-754.
    • (2003) Mol. Microbiol. , vol.47 , pp. 745-754
    • Kuthan, M.1    Devaux, F.2    Janderova, B.3    Slaninova, I.4    Jacq, C.5    Palkova, Z.6
  • 29
    • 0033589823 scopus 로고    scopus 로고
    • Analysis of a continuous-culture technique for the selection of mutants tolerant to extreme
    • Lane, P. G., Oliver, S. G., andButler, P. R. (1999). Analysis of a continuous-culture technique for the selection of mutants tolerant to extreme. Biotechnol. Bioeng. 65, 397-406.
    • (1999) Biotechnol. Bioeng. , vol.65 , pp. 397-406
    • Lane, P.G.1    Oliver, S.G.2    Butler, P.R.3
  • 30
    • 65249100208 scopus 로고    scopus 로고
    • The cost of gene expression underlies a fitness trade-off in yeast
    • Lang, G. I., Murray, A. W., andBotstein, D. (2009). The cost of gene expression underlies a fitness trade-off in yeast. Proc. Natl. Acad. Sci. USA 106, 5755-5760.
    • (2009) Proc. Natl. Acad. Sci. USA , vol.106 , pp. 5755-5760
    • Lang, G.I.1    Murray, A.W.2    Botstein, D.3
  • 31
    • 31944450953 scopus 로고    scopus 로고
    • Experimental evolution of mating discrimination in budding yeast
    • Leu, J. Y., andMurray, A. W. (2006). Experimental evolution of mating discrimination in budding yeast. Curr. Biol. 16, 280-286.
    • (2006) Curr. Biol. , vol.16 , pp. 280-286
    • Leu, J.Y.1    Murray, A.W.2
  • 32
    • 0025756355 scopus 로고
    • The permittistat: A novel type of turbidostat
    • Mark, G. H., Davey, C. L., andKell, D. B. (1991). The permittistat: A novel type of turbidostat. J. Gen. Microbiol. 137, 735.
    • (1991) J. Gen. Microbiol. , vol.137 , pp. 735
    • Mark, G.H.1    Davey, C.L.2    Kell, D.B.3
  • 33
    • 0000369563 scopus 로고
    • La Technique de culture continue. Theorie et applications
    • Monod, J. (1950). La Technique de culture continue. Theorie et applications. Ann. Inst. Pasteur 79, 390-410.
    • (1950) Ann. Inst. Pasteur , vol.79 , pp. 390-410
    • Monod, J.1
  • 35
    • 0001555399 scopus 로고
    • Description of the chemostat
    • Novick, A., andSzilard, L. (1950a). Description of the chemostat. Science 715-716.
    • (1950) Science , pp. 715-716
    • Novick, A.1    Szilard, L.2
  • 36
    • 0001519096 scopus 로고
    • Experiments with the chemostat on spontaneous mutations of bacteria
    • Novick, A., andSzilard, L. (1950b). Experiments with the chemostat on spontaneous mutations of bacteria. Proc. Natl. Acad. Sci. USA 36, 708-719.
    • (1950) Proc. Natl. Acad. Sci. USA , vol.36 , pp. 708-719
    • Novick, A.1    Szilard, L.2
  • 37
    • 0021069904 scopus 로고
    • Relative fitness can decrease in evolving asexual populations of S. cerevisiae
    • Paquin, C., andAdams, J. (1983a). Relative fitness can decrease in evolving asexual populations of S. cerevisiae. Nature 306, 368-371.
    • (1983) Nature , vol.306 , pp. 368-371
    • Paquin, C.1    Adams, J.2
  • 38
    • 0020640576 scopus 로고
    • Frequency of fixation of adaptive mutations is higher in evolving diploid than haploid yeast populations
    • Paquin, C., and Adams, J. (1983b). Frequency of fixation of adaptive mutations is higher in evolving diploid than haploid yeast populations. Nature 302, 495-500.
    • (1983) Nature , vol.302 , pp. 495-500
    • Paquin, C.1    Adams, J.2
  • 39
    • 34548769341 scopus 로고    scopus 로고
    • Evolution of global regulatory networks during a long-term experiment with Escherichia coli
    • DOI 10.1002/bies.20629
    • Philippe, N., Crozat, E., Lenski, R. E., andSchneider, D. (2007). Evolution of global regulatory networks during a long-term experiment with Escherichia coli. Bioessays 29, 846-860. (Pubitemid 47424895)
    • (2007) BioEssays , vol.29 , Issue.9 , pp. 846-860
    • Philippe, N.1    Crozat, E.2    Lenski, R.E.3    Schneider, D.4
  • 40
    • 34848895990 scopus 로고    scopus 로고
    • RNA and RNP as new molecular parts in synthetic biology
    • DOI 10.1016/j.jbiotec.2007.07.952, PII S0168165607015064
    • Saito, H., andInoue, T. (2007). RNA and RNP as new molecular parts in synthetic biology. J. Biotechnol. 132, 1-7. (Pubitemid 47503387)
    • (2007) Journal of Biotechnology , vol.132 , Issue.1 , pp. 1-7
    • Saito, H.1    Inoue, T.2
  • 41
    • 23844550230 scopus 로고    scopus 로고
    • The use of genetically modified Saccharomyces cerevisiae strains in the wine industry
    • Schuller, D., andCasal, M. (2005). The use of genetically modified Saccharomyces cerevisiae strains in the wine industry. Appl. Microbiol. Biotechnol. 68, 292-304.
    • (2005) Appl. Microbiol. Biotechnol. , vol.68 , pp. 292-304
    • Schuller, D.1    Casal, M.2
  • 42
    • 33747370046 scopus 로고    scopus 로고
    • High-resolution mutation mapping reveals parallel experimental evolution in yeast
    • Segre, A. V., Murray, A. W., andLeu, J. Y. (2006). High-resolution mutation mapping reveals parallel experimental evolution in yeast. PLoS Biol. 4, e256.
    • (2006) PLoS Biol. , vol.4
    • Segre, A.V.1    Murray, A.W.2    Leu, J.Y.3
  • 43
    • 33846936445 scopus 로고    scopus 로고
    • Synthetic cooperation in engineered yeast populations
    • Shou, W., Ram, S., andVilar, J. M. G. (2007). Synthetic cooperation in engineered yeast populations. Proc. Natl. Acad. Sci. USA 104, 1877-1882.
    • (2007) Proc. Natl. Acad. Sci. USA , vol.104 , pp. 1877-1882
    • Shou, W.1    Ram, S.2    Vilar, J.M.G.3
  • 44
    • 33747153121 scopus 로고    scopus 로고
    • Ploidy controls the success of mutators and nature of mutations during budding yeast evolution
    • Thompson, D. A., Desai, M. M., andMurray, A. W. (2006). Ploidy controls the success of mutators and nature of mutations during budding yeast evolution. Curr. Biol. 16, 1581-1590.
    • (2006) Curr. Biol. , vol.16 , pp. 1581-1590
    • Thompson, D.A.1    Desai, M.M.2    Murray, A.W.3
  • 45
    • 34548131710 scopus 로고    scopus 로고
    • Effects of aneuploidy on cellular physiology and cell division in haploid yeast
    • DOI 10.1126/science.1142210
    • Torres, E. M., Sokolsky, T., Tucker, C. M., Chan, L. Y., Boselli, M., Dunham, M. J., andAmon, A. (2007). Effects of aneuploidy on cellular physiology and cell division in haploid yeast. Science 317, 916-924. (Pubitemid 47301313)
    • (2007) Science , vol.317 , Issue.5840 , pp. 916-924
    • Torres, E.M.1    Sokolsky, T.2    Tucker, C.M.3    Chan, L.Y.4    Boselli, M.5    Dunham, M.J.6    Amon, A.7
  • 47
    • 33748111498 scopus 로고    scopus 로고
    • The development of superior yeast strains for the food and beverage industries: Challenges, opportunities and potential benefits
    • A. Querol and G. H. Fleet, eds., Springer-Verlag, Berlin Heidelberg
    • Verstrepen, K. J., Chambers, P. J., and Pretorius, I. S. (2006). The development of superior yeast strains for the food and beverage industries: Challenges, opportunities and potential benefits. In ''Yeasts in Food and Beverages,'' (A. Querol and G. H. Fleet, eds.), Springer-Verlag, Berlin Heidelberg.
    • (2006) Yeasts in Food and Beverages
    • Verstrepen, K.J.1    Chambers, P.J.2    Pretorius, I.S.3
  • 48
    • 1842425679 scopus 로고    scopus 로고
    • Experimental studies on ploidy evolution in yeast
    • Zeyl, C. (2004). Experimental studies on ploidy evolution in yeast. FEMS Microbiol. Lett. 233, 187-192.
    • (2004) FEMS Microbiol. Lett. , vol.233 , pp. 187-192
    • Zeyl, C.1
  • 49
    • 14844363079 scopus 로고    scopus 로고
    • The number of mutations selected during adaptation in a laboratory population of Saccharomyces cerevisiae
    • Zeyl, C. (2005). The number of mutations selected during adaptation in a laboratory population of Saccharomyces cerevisiae. Genetics 169, 1825-1831.
    • (2005) Genetics , vol.169 , pp. 1825-1831
    • Zeyl, C.1
  • 50
    • 33745900501 scopus 로고    scopus 로고
    • Experimental evolution with yeast
    • Zeyl, C. (2006). Experimental evolution with yeast. FEMS Yeast Res. 6, 685-691.
    • (2006) FEMS Yeast Res. , vol.6 , pp. 685-691
    • Zeyl, C.1
  • 51
    • 0035148461 scopus 로고    scopus 로고
    • Estimates of the rate and distribution of fitness effects of spontaneous mutation in Saccharomyces cerevisiae
    • Zeyl, C., andDeVisser, J. A. (2001). Estimates of the rate and distribution of fitness effects of spontaneous mutation in Saccharomyces cerevisiae. Genetics 157, 53-61.
    • (2001) Genetics , vol.157 , pp. 53-61
    • Zeyl, C.1    DeVisser, J.A.2


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