Suitability of replacement markers for functional analysis studies in Saccharomyces cerevisiae

Yeast

Volumn 13, Issue 16, 1997, Pages 1563-1573

  Baganz, Frank ^a   Hayes, Andrew ^a   Marren, Derek ^b   Gardner, David C J ^a   Oliver, Stephen G ^a  

^a UNIVERSITY OF MANCHESTER   (United Kingdom)

^b PFIZER GLOBAL RESEARCH AND DEVELOPMENT   (United Kingdom)

Author keywords

Competition experiments; Functional analysis; Gene replacement; Saccharomyces cerevisiae

Indexed keywords

ARTICLE; DELETION MUTANT; FUNGUS GROWTH; GROWTH RATE; NONHUMAN; PRIORITY JOURNAL; SACCHAROMYCES CEREVISIAE;

ANTI-BACTERIAL AGENTS; BASE SEQUENCE; DRUG RESISTANCE, MICROBIAL; GENES, FUNGAL; GENETIC MARKERS; GENTAMICINS; HISTIDINE; MOLECULAR SEQUENCE DATA; SACCHAROMYCES CEREVISIAE;

FUNGI; MYXOGASTRIA; SACCHAROMYCES CEREVISIAE;

EID: 0031416546     PISSN: 0749503X     EISSN: None     Source Type: Journal    
DOI: 10.1002/(SICI)1097-0061(199712)13:16<1563::AID-YEA240>3.0.CO;2-6     Document Type: Article

References (30)

1. Baudin, A., Ozier-Kalogeropoulos, O., Denouel, A., Lacroute, F. and Cullin, C. (1993). A simple and efficient method for direct gene deletion in Saccharomyces cerevisiae. Nucl. Acids Res. 21, 3329-3330.
2. Baudin-Baillieu, A., Guillemet, E., Cullin, C and Lacroute, F. (1997). Construction of a yeast strain deleted for the TRP1 promoter and coding region that enhanced the efficiency of the polymerase chain reaction-disruption method. Yeast 13, 353 356.
3. Berben, G., Dumont, J., Gillequet, V., Bolle, P. A. and Hilger, F. (1991). The YDp plasmids: a uniform set of vectors bearing versatile gene disruption cassettes for Saccharomyces cerevisiae. Yeast 7, 475-477.
4. Brand, G. C. (1996). Top-down metabolic control analysis. J Theor. Biol. 182, 351-360.
5. Danhash, N., Gardner, D. C. J. and Oliver, S. G. (1991). Heritable damage to yeast caused by transformation. Bio/Technology 9, 179-182.
6. Dujon, B. (1996). The yeast genome project: What did we learn? Trends in Genet. 12, 263-270.
7. Dykhuizen, D. E. and Hartl, D. L. (1983). Selection in chemostats. Microbial Rev. 47, 150-168.
8. Gietz, R. D., Schiestl, R. H., Willems, A. R. and Woods, R. A. (1995). Studies on the transformation of intact yeast cells by LiAc/SS-DNA/PEG procedure. Yeast 11, 355-360.
9. Goffeau, A., Barrell, B. G., Bussey, H., et al. (1996). Life with 6000 genes. Science 274, 546-567.
10. Goffeau, A., et al. (1997). The yeast genome directory. Nature 387 (Suppl.), 5-105.
11. Hammond, J. R. M., Lancashire, W. D., Meaden, P. G., Oliver, S. G. Smith, N. A. (1994). Stability of genetically modified yeast in relation to beer of good and consistent quality. MAFF (Ministry of Agriculture. Fisheries and Food: UK) Report 07/63M.
12. Hofmeyr, J.-H. S. (1995). Metabolic regulation: a control analytic perspective. J. Bioenerget. Biomembr. 27, 479-490.
13. Kacser, H. and Burns, J. A. (1973). The control of flux. Symp. Soc. Exp. Biol. 27, 65-104.
14. Mewes, H. W., Albermann, K., Bahr, M., et al. (1997) Overview of the yeast genome. Nature 387 (Suppl.), 7-65.
15. Niederberger, P., Prasad, R., Miozzari, G. and Kacser, H. (1992). A strategy for increasing an in vivo flux by genetic manipulations-the tryptophan system of yeast. Biochem. J. 287, 473-479.
16. Oliver, S. G. (1996a). From DNA sequence to biological function. Nature 379, 597-600.
17. Oliver, S. G. (1996b). A network approach to the systematic analysis of yeast gene function. Trends in Genet. 12, 241-242.
18. Pronk, J. T., Steensma, Y. H. and Van Dijken, J. P. (1996). Pyruvate metabolism in Saccharomyces cerevisiae. Yeast 12, 1607-1633.
19. Rieger, K.-J., Kaniak, A., Coppee, J.-Y., et al. (1997). Large-scale phenotypic analysis-the pilot project on yeast chromosome III. Yeast 13, 1547-1562.
20. Rohwer, J. M., Schuster, S. and Westerhoff, H. V. (1996). How to recognize mono-functional units in a metabolic system. J Theor. Biol. 179, 213-228.
21. Schena, M., Shalon, D., Heller, R., Chai, A., Brown, P. O. and Davis, R. W. (1996). Parallel human genome analysis-microarray-based expression monitoring of 1000 genes. Proc. Natl. Acad. Sci. USA 93, 10614-10619.
22. Shoemaker, D. D., Lashkari, D. A., Morris, D., Mittmann, M. and Davis, R. W. (1996). Quantitative phenotypic analysis of yeast deletion mutants using a highly parallel molecular bar-coding strategy. Nature Genetics 14, 450-456.
23. Smith, V., Botstein, D. and Brown, P. O. (1995). Genetic footprinting-a genomic strategy for determining a gene's function given its sequence. Proc. Natl. Acad. Sci. USA 92, 6479-6483.
24. Smith, V., Chou, K. N., Lashkari, D., Botstein, D. and Brown, P. O. (1996). Functional analysis of the genes of yeast chromosome V by genetic footprinting. Science 274, 2069-2074.
25. Teusink, B., Baganz, F., Westerhoff, H. V., and Oliver, S. G. (1997). Metabolic control analysis as a tool in the elucidation of the function of novel genes. In Tuite, M. F. and Brown A. J. (Eds). Methods in Microbiolgy: Yeast Gene Analysis. Academic Press, London. (In press.)
26. Verduyn, C., Postma, E., Scheflfers, W. A. and Van Dijken, J. P. (1990). Physiology of Saccharomyces cerevisiae in anaerobic glucose-limited chemostat cultures. J. Gen. Microbiol. 136, 395-403.
27. Wach, A., Brachat, A., Pohlmann, R. and Philippsen, P. (1994). New heterologous modules for classical or PCR-based gene disruptions in Saccharomyces cerevisiae. Yeast 10, 1793-1808.
28. Wach, A. (1996). PCR-synthesis of marker cassettes with long flanking homology regions for gene disruptions in S. cerevisiae. Yeast 12, 259-265.
29. Winston, F., Dollard, C. and Ricuperohovasse, S. L. (1995). Construction of a set of convenient Saccharomyces cerevisiae strains that are isogenic to S288C. Yeast 11, 53-55.
30. Yocum, R. (1983). Genetic engineering of industrial yeasts. Proc. Bio. Expo. 86, 17.