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Volumn 76, Issue 16, 2010, Pages 5402-5408

Community dynamics of bacteria in sourdough fermentations as revealed by their metatranscriptome

Author keywords

[No Author keywords available]

Indexed keywords

COMMUNITY DYNAMICS; FUNCTIONAL GENES; IDENTIFICATION TECHNIQUES; LACTOBACILLUS PLANTARUM; LACTOCOCCUS LACTIS; MICROARRAY DATA; MICROBIOLOGICAL ANALYSIS; PEDIOCOCCUS PENTOSACEUS; SOURDOUGH FERMENTATION; TRANSITION PHASE;

EID: 77955948198     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.00570-10     Document Type: Article
Times cited : (69)

References (38)
  • 4
    • 0037464596 scopus 로고    scopus 로고
    • Fermentation by Lactobacillus fermentum Ogi E1 of different combinations of carbohydrates occurring naturally in cereals: Consequences on growth energetics and a-amylase production
    • Calderon-Santoyo, M., G. Loiseau, andJ. P. Guyot. 2003. Fermentation by Lactobacillus fermentum Ogi E1 of different combinations of carbohydrates occurring naturally in cereals: consequences on growth energetics and a-amylase production. Int. J. Food Microbiol. 80:161-169.
    • (2003) Int. J. Food Microbiol. , vol.80 , pp. 161-169
    • Calderon-Santoyo, M.1    Loiseau, G.2    Guyot, J.P.3
  • 5
    • 0037437446 scopus 로고    scopus 로고
    • Study of starch fermentation at low pH by Lactobacillus fermentum Ogi E1 reveals uncoupling between growth and α-amylase production at pH 4.0
    • Calderon-Santoyo, M., G. Loiseau, R. R. Sanoja, andJ. P. Guyot. 2003. Study of starch fermentation at low pH by Lactobacillus fermentum Ogi E1 reveals uncoupling between growth and α-amylase production at pH 4.0. Int. J. Food Microbiol. 80:77-87.
    • (2003) Int. J. Food Microbiol. , vol.80 , pp. 77-87
    • Calderon-Santoyo, M.1    Loiseau, G.2    Sanoja, R.R.3    Guyot, J.P.4
  • 8
    • 0038365368 scopus 로고    scopus 로고
    • Analysis of microarray data using Z score transformation
    • Cheadle, C., M. P. Vawter, W. J. Freed, andK. G. Becker. 2003. Analysis of microarray data using Z score transformation. J. Mol. Diagn. 5:73-81.
    • (2003) J. Mol. Diagn. , vol.5 , pp. 73-81
    • Cheadle, C.1    Vawter, M.P.2    Freed, W.J.3    Becker, K.G.4
  • 9
    • 0034092064 scopus 로고    scopus 로고
    • Development of a rapid method for the identification of Lactobacillus spp. isolated from naturally fermented Italian sausages using a polymerase chain reactiontemperature gradient gel electrophoresis
    • Cocolin, L., M. Manzano, C. Cantoni, andG. Comi. 2000. Development of a rapid method for the identification of Lactobacillus spp. isolated from naturally fermented Italian sausages using a polymerase chain reactiontemperature gradient gel electrophoresis. Lett. Appl. Microbiol. 30:126-129.
    • (2000) Lett. Appl. Microbiol. , vol.30 , pp. 126-129
    • Cocolin, L.1    Manzano, M.2    Cantoni, C.3    Comi, G.4
  • 10
    • 34848860159 scopus 로고    scopus 로고
    • A taxonomic survey of lactic acid bacteria isolated from wheat (Triticum durum) kernels and non-conventional flours
    • Corsetti, A., L. Settanni, C. C. Lopez, G. E. Felis, M. Mastrangelo, andG. Suzzi. 2007. A taxonomic survey of lactic acid bacteria isolated from wheat (Triticum durum) kernels and non-conventional flours. Syst. Appl. Microbiol. 30:561-571.
    • (2007) Syst. Appl. Microbiol. , vol.30 , pp. 561-571
    • Corsetti, A.1    Settanni, L.2    Lopez, C.C.3    Felis, G.E.4    Mastrangelo, M.5    Suzzi, G.6
  • 11
    • 34047210845 scopus 로고    scopus 로고
    • Identification of subdominant sourdough lactic acid bacteria and their evolution during laboratory-scale fermentations
    • Corsetti, A., L. Settanni, S. Valmorri, M. Mastrangelo, andG. Suzzi. 2007. Identification of subdominant sourdough lactic acid bacteria and their evolution during laboratory-scale fermentations. Food Microbiol. 24:592-600.
    • (2007) Food Microbiol. , vol.24 , pp. 592-600
    • Corsetti, A.1    Settanni, L.2    Valmorri, S.3    Mastrangelo, M.4    Suzzi, G.5
  • 12
    • 22244486702 scopus 로고    scopus 로고
    • Biodiversity of sourdough lactic acid bacteria
    • De Vuyst, L., andP. Neyssens. 2005. Biodiversity of sourdough lactic acid bacteria. Trends Food Sci. Technol. 16:43-56.
    • (2005) Trends Food Sci. Technol. , vol.16 , pp. 43-56
    • De Vuyst, L.1    Neyssens, P.2
  • 13
    • 69749114507 scopus 로고    scopus 로고
    • Biodiversity, ecological determinants, and metabolic exploitation of sourdough microbiota
    • De Vuyst, L., G. Vrancken, F. Ravyts, T. Rimaux, andS. Weckx. 2009. Biodiversity, ecological determinants, and metabolic exploitation of sourdough microbiota. Food Microbiol. 26:666-675.
    • (2009) Food Microbiol. , vol.26 , pp. 666-675
    • De Vuyst, L.1    Vrancken, G.2    Ravyts, F.3    Rimaux, T.4    Weckx, S.5
  • 14
    • 0042029638 scopus 로고    scopus 로고
    • Microbial and physiological characterization of weakly amylolytic but fast-growing lactic acid bacteria: A functional role in supporting microbial diversity in pozol, a Mexican fermented maize beverage
    • Diaz-Ruiz, G., J. P. Guyot, F. Ruiz-Terna, J. Morlon-Guyot, andC. Wacher. 2003. Microbial and physiological characterization of weakly amylolytic but fast-growing lactic acid bacteria: a functional role in supporting microbial diversity in pozol, a Mexican fermented maize beverage. Appl. Environ. Microbiol. 69:4367-4374.
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 4367-4374
    • Diaz-Ruiz, G.1    Guyot, J.P.2    Ruiz-Terna, F.3    Morlon-Guyot, J.4    Wacher, C.5
  • 15
    • 0024444791 scopus 로고
    • Isolation and direct complete nucleotide determination of entire genes-characterization of a gene coding for 16S-ribosomal RNA
    • Edwards, U., T. Rogall, H. Blocker, M. Emde, andE. C. Bottger. 1989. Isolation and direct complete nucleotide determination of entire genes-characterization of a gene coding for 16S-ribosomal RNA. Nucleic Acids Res. 17:7843-7853.
    • (1989) Nucleic Acids Res. , vol.17 , pp. 7843-7853
    • Edwards, U.1    Rogall, T.2    Blocker, H.3    Emde, M.4    Bottger, E.C.5
  • 17
    • 1142297453 scopus 로고    scopus 로고
    • FCR-DGGE fingerprinting: Novel strategies for detection of microbes in food
    • Ercolini, D. 2004. FCR-DGGE fingerprinting: novel strategies for detection of microbes in food. J. Microbiol. Methods 56:297-314.
    • (2004) J. Microbiol. Methods , vol.56 , pp. 297-314
    • Ercolini, D.1
  • 19
    • 46849102631 scopus 로고    scopus 로고
    • Molecular techniques in food fermentation: Principles and applications
    • L. Cocolin and D. Ercolini (ed.) Springer, Heidelberg, Germany
    • Giraffa, G., andD. Carminati. 2008. Molecular techniques in food fermentation: principles and applications, p. 1-30. In L. Cocolin and D. Ercolini (ed.), Molecular techniques in the microbial ecology of fermented foods. Springer, Heidelberg, Germany.
    • (2008) Molecular Techniques in the Microbial Ecology of Fermented Foods , pp. 1-30
    • Giraffa, G.1    Carminati, D.2
  • 20
    • 0031798042 scopus 로고    scopus 로고
    • The sourdough microflora: Interactions of lactic acid bacteria and yeasts
    • Gobbetti, M. 1998. The sourdough microflora: interactions of lactic acid bacteria and yeasts. Trends Food Sci. Technol. 9:267-274.
    • (1998) Trends Food Sci. Technol. , vol.9 , pp. 267-274
    • Gobbetti, M.1
  • 21
    • 0040883743 scopus 로고    scopus 로고
    • The microbiology of vegetable fermentation
    • B. J. B. Wood (ed.), Blackie Academic and Professional, London, United Kingdom
    • Harris, L. J. 1998. The microbiology of vegetable fermentation, p. 45-72. In B. J. B. Wood (ed.), Microbiology of fermented foods. Blackie Academic and Professional, London, United Kingdom.
    • (1998) Microbiology of Fermented Foods , pp. 45-72
    • Harris, L.J.1
  • 24
    • 0037224663 scopus 로고    scopus 로고
    • Monitoring the bacterial population dynamics in sourdough fermentation processes by using PCR-denaturing gradient gel electrophoresis
    • Meroth, C. B., J. Walter, C. Hertel, M. J. Brandt, andW. P. Hammes. 2003. Monitoring the bacterial population dynamics in sourdough fermentation processes by using PCR-denaturing gradient gel electrophoresis. Appl. Environ. Microbiol. 69:475-482.
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 475-482
    • Meroth, C.B.1    Walter, J.2    Hertel, C.3    Brandt, M.J.4    Hammes, W.P.5
  • 25
    • 60649109653 scopus 로고    scopus 로고
    • Metatranscriptome analysis of lactic acid bacteria during kimchi fermentation with genome-probing microarrays
    • Nam, Y.-D., H.-W. Chang, K.-H. Kim, S. W. Roh, andJ.-W. Bae. 2009. Metatranscriptome analysis of lactic acid bacteria during kimchi fermentation with genome-probing microarrays. Int. J. Food Microbiol. 130:140-146.
    • (2009) Int. J. Food Microbiol. , vol.130 , pp. 140-146
    • Nam, Y.-D.1    Chang, H.-W.2    Kim, K.-H.3    Roh, S.W.4    Bae, J.-W.5
  • 26
    • 33746035696 scopus 로고    scopus 로고
    • A DNA microarray platform based on direct detection of rRNA for characterization of freshwater sediment-related prokaryotic communities
    • Peplies, J., C. Lachmund, F. O. Glockner, andW. Manz. 2006. A DNA microarray platform based on direct detection of rRNA for characterization of freshwater sediment-related prokaryotic communities. Appl. Environ. Microbiol. 72:4829-4838.
    • (2006) Appl. Environ. Microbiol. , vol.72 , pp. 4829-4838
    • Peplies, J.1    Lachmund, C.2    Glockner, F.O.3    Manz, W.4
  • 27
    • 19744376363 scopus 로고    scopus 로고
    • The surface microflora dynamics of bacterial smear-ripened Tilsit cheese determined by T-RFLP DNA population fingerprint analysis
    • Rademaker, J. L. W., M. Peinhopf, L. Rijnen, W. Bockelmann, andW. H. Noordman. 2005. The surface microflora dynamics of bacterial smear-ripened Tilsit cheese determined by T-RFLP DNA population fingerprint analysis. Int. Dairy J. 15:785-794.
    • (2005) Int. Dairy J. , vol.15 , pp. 785-794
    • Rademaker, J.L.W.1    Peinhopf, M.2    Rijnen, L.3    Bockelmann, W.4    Noordman, W.H.5
  • 28
    • 68949117815 scopus 로고    scopus 로고
    • Biodiversity of lactic acid bacteria in French wheat sourdough as determined by molecular characterization using species-specific PCR
    • Robert, H., V. Gabriel, andC. Fontagné-Faucher. 2009. Biodiversity of lactic acid bacteria in French wheat sourdough as determined by molecular characterization using species-specific PCR. Int. J. Food Microbiol. 135:53-59.
    • (2009) Int. J. Food Microbiol. , vol.135 , pp. 53-59
    • Robert, H.1    Gabriel, V.2    Fontagné-Faucher, C.3
  • 30
    • 4644271406 scopus 로고    scopus 로고
    • The microbiology of cocoa fermentation and its role in chocolate quality
    • Schwan, R. F., andA. E. Wheals. 2004. The microbiology of cocoa fermentation and its role in chocolate quality. Crit. Rev. Food Sci. Nutr. 44:205-221.
    • (2004) Crit. Rev. Food Sci. Nutr. , vol.44 , pp. 205-221
    • Schwan, R.F.1    Wheals, A.E.2
  • 31
    • 59949104420 scopus 로고    scopus 로고
    • Taxonomic structure and monitoring of the dominant population of lactic acid bacteria during wheat flour sourdough type i propagation using Lactobacillus sanfranciscensis starters
    • Siragusa, S., R. Di Cagno, D. Ercolini, F. Minervini, M. Gobbetti, andM. De Angelis. 2009. Taxonomic structure and monitoring of the dominant population of lactic acid bacteria during wheat flour sourdough type I propagation using Lactobacillus sanfranciscensis starters. Appl. Environ. Microbiol. 75: 1099-1109.
    • (2009) Appl. Environ. Microbiol. , vol.75 , pp. 1099-1109
    • Siragusa, S.1    Di Cagno, R.2    Ercolini, D.3    Minervini, F.4    Gobbetti, M.5    De Angelis, M.6
  • 32
    • 44649113168 scopus 로고    scopus 로고
    • Yeasts associated to traditional balsamic vinegar: Ecological and technological features
    • Solieri, L., andP. Giudici. 2008. Yeasts associated to traditional balsamic vinegar: ecological and technological features. Int. J. Food Microbiol. 125: 36-45.
    • (2008) Int. J. Food Microbiol. , vol.125 , pp. 36-45
    • Solieri, L.1    Giudici, P.2
  • 33
    • 34547817041 scopus 로고    scopus 로고
    • Population dynamics and metabolite target analysis of lactic acid bacteria during laboratory fermentations of wheat and spelt sourdoughs
    • Van der Meulen, R., I. Scheirlinck, A. Van Schoor, G. Huys, M. Vancanneyt, P. Vandamme, andL. De Vuyst. 2007. Population dynamics and metabolite target analysis of lactic acid bacteria during laboratory fermentations of wheat and spelt sourdoughs. Appl. Environ. Microbiol. 73:4741-4750.
    • (2007) Appl. Environ. Microbiol. , vol.73 , pp. 4741-4750
    • Van Der Meulen, R.1    Scheirlinck, I.2    Van Schoor, A.3    Huys, G.4    Vancanneyt, M.5    Vandamme, P.6    De Vuyst, L.7
  • 34
    • 52049103837 scopus 로고    scopus 로고
    • Oligonucleotide microarrays for the detection and identification of viable beer spoilage bacteria
    • Weber, D. G., K. Sahm, T. Polen, V. F. Wendisch, andG. Antranikian. 2008. Oligonucleotide microarrays for the detection and identification of viable beer spoilage bacteria. J. Appl. Microbiol. 105:951-962.
    • (2008) J. Appl. Microbiol. , vol.105 , pp. 951-962
    • Weber, D.G.1    Sahm, K.2    Polen, T.3    Wendisch, V.F.4    Antranikian, G.5
  • 36
    • 0004237145 scopus 로고    scopus 로고
    • Blackie Academic & Professional, London, United Kingdom
    • Wood, B. J. B. 1998. Microbiology of fermented foods. Blackie Academic & Professional, London, United Kingdom.
    • (1998) Microbiology of Fermented Foods
    • Wood, B.J.B.1
  • 37
    • 47749143312 scopus 로고    scopus 로고
    • Microarraybased characterization of microbial community functional structure and heterogeneity in marine sediments from the Gulf of Mexico
    • Wu, L., L. Kellogg, A. H. Devol, J. M. Tiedje, andJ. Zhou. 2008. Microarraybased characterization of microbial community functional structure and heterogeneity in marine sediments from the Gulf of Mexico. Appl. Environ. Microbiol. 74:4516-4529.
    • (2008) Appl. Environ. Microbiol. , vol.74 , pp. 4516-4529
    • Wu, L.1    Kellogg, L.2    Devol, A.H.3    Tiedje, J.M.4    Zhou, J.5
  • 38
    • 0037772204 scopus 로고    scopus 로고
    • Microarrays for bacterial detection and microbial community analysis
    • Zhou, J. 2003. Microarrays for bacterial detection and microbial community analysis. Curr. Opin. Microbiol. 6:288-294.
    • (2003) Curr. Opin. Microbiol. , vol.6 , pp. 288-294
    • Zhou, J.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.