A taxonomic survey of lactic acid bacteria isolated from wheat (Triticum durum) kernels and non-conventional flours

Systematic and Applied Microbiology

Volumn 30, Issue 7, 2007, Pages 561-571

  Corsetti, Aldo ^a   Settanni, Luca ^a   Chaves López, Clemencia ^a   Felis, Giovanna E ^b   Mastrangelo, Mario ^a   Suzzi, Giovanna ^a  

^a UNIVERSITY OF TERAMO   (Italy)

^b UNIVERSITY OF VERONA   (Italy)

Author keywords

Culture dependent methods; Genetic polyphasic approach; Lactic acid bacteria; Non conventional flours; Sourdough; Triticum durum

Indexed keywords

AGAR; CATALASE; RNA 16S;

AEROCOCCUS; ARTICLE; BACTERIAL STRAIN; BACTERIUM COLONY; BACTERIUM CULTURE; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATE; BACTERIUM ISOLATION; DOUGH; ENTEROCOCCUS; ENTEROCOCCUS FAECIUM; ENTEROCOCCUS MUNDTII; FLOUR; GENE SEQUENCE; GRAIN; GRAM POSITIVE BACTERIUM; ITALY; LACTIC ACID BACTERIUM; LACTOBACILLUS; LACTOBACILLUS GRAMINIS; LACTOCOCCUS; NONHUMAN; PEDIOCOCCUS; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; SPECIES DIFFERENCE; TAXONOMY; WHEAT;

AEROCOCCUS; BACTERIA (MICROORGANISMS); ENTEROCOCCUS; ENTEROCOCCUS FAECIUM; ENTEROCOCCUS MUNDTII; LACTOBACILLUS; LACTOBACILLUS GRAMINIS; LACTOCOCCUS; PEDIOCOCCUS; TRITICUM AESTIVUM; TRITICUM TURGIDUM SUBSP. DURUM;

EID: 34848860159     PISSN: 07232020     EISSN: 16180984     Source Type: Journal    
DOI: 10.1016/j.syapm.2007.07.001     Document Type: Article

References (57)

1. Altschul S.F., Madden T.L., Schäffer A.A., Zhang J., Zhang Z., Miller W., and Lipman D.J. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25 (1997) 3389-3402
2. Araújo W.L., Marcon J., Maccheroni Jr. W., Van Elsas J.D., Van Vuurde J.W.L., and Azevedo J.L. Diversity of endophytic bacterial populations and their interaction with Xylella fastidiosa in citrus plants. Appl. Environ. Microbiol. 68 (2002) 4906-4914
3. Atrih A., Rekhif N., Moir A.J.G., Lebrihi A., and Lefebvre G. Mode of action, purification and amino acid sequence of plantaricin C19, an anti-Listeria bacteriocin produced by Lactobacillus plantarum C19. Int. J. Food Microbiol. 68 (2001) 93-104
4. Bae S., Fleet G.H., and Heard G.M. Lactic acid bacteria associated with wine grapes from several Australian vineyards. J. Appl. Microbiol. 100 (2006) 712-727
5. Bennik M.H.J., Vanloo B., Brasseur R., Gorris L.G.M., and Smid E.J. A novel bacteriocin with a YGNGV motif from vegetable-associated Enterococcus mundtii: full characterization and interaction with target organisms. Biochim. Biophys. Acta. 1373 (1998) 47-58
6. Berthier F., and Ehrlich S.D. Rapid species identification within two groups of closely related lactobacilli using PCR primers that target the 16S/23S rRNA spacer region. FEMS Microbiol. Lett. 161 (1998) 97-106
7. Cai Y. Identification and characterisation of Enterococcus species isolated from forage crops and their influence on silage fermentation. J. Dairy Sci. 82 (1999) 2466-2471
8. Caplice E., and Fitzgerald G.F. Food fermentations: role of microorganisms in food production and preservation. Int. J. Food Microbiol. 50 (1999) 131-149
9. Collins M.D., Farrow J.A.E., Phillips B.A., and Kandler O. Streptococcus garvieae sp. nov. & Streptococcus plantarum sp. nov. J. Gen. Microbiol. 129 (1984) 3427-3431
10. Collins M.D., Farrow J.A.E., and Jones D. Enterococcus mundtii sp. nov. Int. J. Syst. Bacteriol. 36 (1986) 8-12
11. Corsetti A., De Angelis M., Dellaglio F., Paparella A., Fox P.F., Settanni L., and Gobbetti M. Characterization of sourdough lactic acid bacteria based on genotypic and cell-wall protein analyses. J. Appl. Microbiol. 94 (2003) 641-654
12. Corsetti A., Gobbetti M., Rossi J., and Damiani P. Antimould activity of sourdough lactic acid bacteria: identification of a mixture of organic acids produced by Lactobacillus sanfrancisco CB1. Appl. Microbiol. Biotechnol. 50 (1998) 253-256
13. Corsetti A., Gobbetti M., Rossi J., Haznedari S., Buffa T., and Rocchetti G. Batteri lattici e lieviti da frumento tenero e farine biologiche - Isolamento ed identificazione. Tecnica Molitoria 49 (1998) 1-8
14. Corsetti A., Lavermicocca P., Morea M., Baruzzi F., Tosti N., and Gobbetti M. Phenotypic and molecular identification and clustering of lactic acid bacteria and yeasts from wheat (species Triticum durum and Triticum aestivum) sourdoughs of Southern Italy. Int. J. Food Microbiol. 64 (2001) 95-104
15. Corsetti A., and Settanni L. Lactobacilli in sourdough fermentation. Food Res. Int. 40 (2007) 539-558
16. Corsetti A., Settanni L., Valmorri S., Mastrangelo M., and Suzzi G. Identification of subdominant sourdough lactic acid bacteria and their evolution during laboratory scale-fermentations. Food Microbiol 24 (2007) 592-600
17. Corsetti A., Settanni L., and Van Sinderen D. Characterization of bacteriocin-like inhibitory substances (BLIS) from sourdough lactic acid bacteria and evaluation of their in vitro and in situ activity. J. Appl. Microbiol. 96 (2004) 521-534
18. Dagnaes-Hansen F., Fuursted K., and Kilian M. Septicaemia associated with an Aerococcus viridans infection in immunodeficient mice. Lab. Anim. 38 (2004) 321-325
19. De Los Reyes-Gavilán C.G., Limsowtin G.K.Y., Tailliez P., Séchaud L., and Accolas J.P. A Lactobacillus helveticus specific DNA probe detects restriction fragment length polymorphisms in this species. Appl. Environ. Microbiol. 58 (1992) 3429-3432
20. Devriese L.A., Collins M.D., and Wirth R. The Genus Enterococcus. In: Balows A., Trüper H.G., Dworkin M., Harder W., and Schleifer K.-H. (Eds). The Prokaryotes (1992), Springer, New York 1465-1481
21. De Vuyst L., and Vandamme E.J. Antimicrobial potential of lactic acid bacteria. In: De Vuyst L., and Vandamme E.J. (Eds). Bacteriocins of Lactic Acid Bacteria: Microbiology, Genetics and Applications (1994), Blackie Academic and Professional, London 91-142
22. Eldar A., Ghittino C., Asanta L., Bozzetta E., Goria M., Prearo M., and Bercovier H. Enterococcus seriolicida is a junior synonym of Lactococcus garvieae, a causative agent of septicemia and meningoencephalitis in fish. Curr. Microbiol. 32 (1996) 85-88
23. Elliott J.A., Collins M.D., Pigott N.E., and Facklam R.R. Differentiation of Lactococcus lactis and Lactococcus garvieae from humans by comparison of whole-cell protein patterns. J. Clin. Microbiol. 29 (1991) 2731-2734
24. Fleet G.H. The microorganisms of winemaking - isolation, enumeration and identification. In: Fleet G.H. (Ed). Wine Microbiology and Biotechnology (1993), Harwood Academic Publisher, Switzerland 1-25
25. Fleming H.P., and McFeeters R.F. Use of microbial cultures: vegetable products. Food Technol 35 (1981) 84-88
26. Franz C.M.A.P., Holzapfel W.H., and Stiles M.E. Int. J. Food Microbiol. 47 (1999) 1-24
27. Fugelsang K.C. The lactic acid bacteria. In: Fugelsang K.C. (Ed). Wine Microbiology (1997), Chapman & Hall, New York 159-168
28. Garvie E.I., Farrow J.A.E., and Phillips B.A. B. A. A taxonomic study of some strains of streptococci that grow at 10 °C but not at 45 °C, including Streptococcus lactis and Streptococcus cremoris. Zentralblatt für Bakteriologie, Parasitenkunde, Infektionskrankheiten und Hygiene, 1 Abteilung, Originale C 2 (1981) 151-165
29. Gregersen T. Rapid method for distinction of Gram-negative from Gram-positive bacteria. Appl. Microbiol. Biotechnol. 5 (1978) 123-127
30. Hammes W.P., and Gänzle M.G. Sourdough breads and related products. In: Wood B.J.B. (Ed). Microbiology of Fermented Foods (1993), Blackie Academic and Professional, London 199-216
31. Hancioǧlu O., and Karapinar K. Microflora of Boza, a traditional fermented Turkish beverage. Int. J. Food Microbiol. 35 (1997) 271-274
32. Hartnett D.J., Vaughan A., and Van Sinderen D. Antimicrobial producing lactic acid bacteria isolated from raw barley and sorghum. J. Inst. Brew. 108 (2002) 169-177
33. Höltzel A., Gänzle M.G., Nicholson G.J., Hammes W.P., and Jung G. The first low-molecular-weight antibiotic from lactic acid bacteria: reutericyclin, a new tetrameric acid. Angew. Chem. Int. Ed. Engl. 39 (2000) 2766-2768
34. Jackson C.R., Fedorka-Cray P.J., and Barrett J.B. Use of genus- and species-specific multiplex PCR for identification of enterococci. J. Clin. Microbial. 42 (2004) 3558-3565
35. Kline L., and Sugihara T.F. Microorganisms of the San Francisco sourdough bread process. II. Isolation and characterization of undescribed bacterial species responsible for the souring activity. Appl. Microbiol. 21 (1971) 459-465
36. Kumar S., Tamura K., and Nei M. MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief. Bioinform. 5 (2004) 150-163
37. Lavermicocca P., Valerio F., Evidente A., Lazzaroni S., Corsetti A., and Gobbetti M. Purification and characterization of novel antifungal compounds by sourdough Lactobacillus plantarum 21B. Appl. Environ. Microbiol. 66 (2000) 4084-4090
38. Lee J.S., Heo G.Y., Lee J.W., Oh Y.J., Park J.A., Park Y.H., Pyun Y.R., and Ahn J.S. Analysis of kimchi microflora using denaturing gradient gel electrophoresis. Int. J. Food Microbiol. 102 (2005) 143-150
39. Magnusson J., and Schnürer J. Lactobacillus coryniformis subsp. coryniformis strain Si3 produces a broad-spectrum proteinaceous antifungal compound. Appl. Environ. Microbiol. 67 (2001) 1-5
40. Martinez-Anaya M.A. Enzymes and bread flavors. J. Agric. Food Chem. 44 (1996) 2469-2480
41. Martinez-Murcia A.J., and Collins M.D. Enterococcus sulfureus, a new yellow-pigmented Enterococcus species. FEMS Microbiol. Lett. 80 (1991) 69-74
42. Mensah P., Tomkins A.M., Drasar B.S., and Harrison T.J. Antimicrobial effect of fermented Ghanaian maize dough. J. Appl. Bacteriol. 70 (1991) 203-210
43. Mora D., Fortina M.G., Parini C., and Manachini P.L. Identification of Pediococcus acidilactici and Pediococcus pentosaceus based on 16S rRNA and ldhD gene-targeted multiplex PCR analysis. FEMS Microbiol. Lett. 151 (1997) 231-236
44. Mundt J.O., and Hammer J.L. Lactobacilli on plants. Appl. Microbiol. 16 (1968) 1326-1330
45. Nguyen-The C., and Charlin F. The microbiology of minimally processed fresh fruits and vegetables. Crit. Rev. Food Sci. Nutr. 34 (1994) 371-401
46. Ouadghiri M., Amar M., Vancanneyt M., and Swings J. Biodiversity of lactic acid bacteria in Moroccan soft white cheese (Jben). FEMS Microbiol. Lett. 15 (2005) 267-271
47. Rantsiou K., Urso R., Iacumin L., Cantoni C., Cattaneo P., Comi G., and Cocolin L. Culture-dependent and -independent methods to investigate the microbial ecology of Italian fermented sausages. Appl. Environ. Microbiol. 71 (2005) 1977-1986
48. Rocha J.M., and Malcata F.X. On the microbiological profile of traditional Portuguese sourdough. J. Food Prot. 62 (1999) 1416-1429
49. Settanni L., Van Sinderen D., Rossi J., and Corsetti A. Rapid differentiation and in situ detection of 16 sourdough Lactobacillus species by multiplex PCR. Appl. Environ. Microbiol. 71 (2005) 3049-3059
50. Settanni L., Valmorri S., Van Sinderen D., Suzzi G., Paparella A., and Corsetti A. Combination of multiplex PCR and PCR-DGGE for monitoring common sourdough-associated Lactobacillus species. Appl. Environ. Microbiol. 72 (2006) 3793-3796
51. Stackebrandt E., and Goebel B.M. Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int. J. Syst. Bacteriol. 44 (1994) 846-849
52. Stendid J., Karlsson J.O., and Hogberg N. Intra-specific genetic variation in Heterobasidium annosum revealed by amplification of minisatellite DNA. Mycol. Res. 98 (1994) 57-63
53. Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., and Higgins D.G. The CLUSTAL-X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25 (1997) 4876-4882
54. Toderi G. Frumento (Triticum spp.). In: Baldoni R., and Giardini L. (Eds). Coltivazioni erbacee (1989), Pàtron Editore, Bologna 15-89
55. Ulrich A., and Müller T. Heterogeneity of plant-associated streptococci as characterised by phenotypic features and restriction analysis of PCR-amplified 16S rDNA. J. Appl. Microbiol. 84 (1998) 293-303
56. Vogel R.F., Bocker G., Stolz P., Ehrmann M., Fanta D., Ludwig W., Pot B., Kersters K., Schleifer K.H., and Hammes W.P. Identification of lactobacilli from sourdough and description of Lactobacillus pontis sp. nov. Int. J. Syst. Bacteriol. 44 (1994) 223-229
57. Zlotkin A., Eldar A., Ghittino C., and Bercovier H. Identification of Lactococcus garvieae by PCR. J. Clin. Microbiol. 36 (1998) 983-985