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Volumn 25, Issue 10, 2008, Pages 2181-2187

The effect of ancient DNA damage on inferences of demographic histories

Author keywords

aDNA; Coalescent process; Demography; DNA damage; Genealogy

Indexed keywords

ARTICLE; BUFFALO; DEMOGRAPHY; DNA DAMAGE; DNA SEQUENCE; POPULATION GENETICS; POPULATION SIZE; SAMPLING; SIMULATION;

EID: 52449123962     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/msn163     Document Type: Article
Times cited : (46)

References (31)
  • 1
    • 33644781709 scopus 로고    scopus 로고
    • Binladen J, Wiuf C, Gilbert MT, et al. (11 co-authors). 2006. Assessing the fidelity of ancient DNA sequences amplified from nuclear genes. Genetics. 172:733-741.
    • Binladen J, Wiuf C, Gilbert MT, et al. (11 co-authors). 2006. Assessing the fidelity of ancient DNA sequences amplified from nuclear genes. Genetics. 172:733-741.
  • 2
    • 34848827224 scopus 로고    scopus 로고
    • Briggs AW, Stenzel U, Johnson PL, et al. (11 co-authors). 2007. Patterns of damage in genomic DNA sequences from a Neandertal. Proc Natl Acad Sci USA. 104:14616-14621.
    • Briggs AW, Stenzel U, Johnson PL, et al. (11 co-authors). 2007. Patterns of damage in genomic DNA sequences from a Neandertal. Proc Natl Acad Sci USA. 104:14616-14621.
  • 3
    • 34848866065 scopus 로고    scopus 로고
    • Novel high-resolution characterization of ancient DNA reveals C > U-type base modification events as the sole cause of post mortem miscoding lesions
    • Brotherton P, Endicott P, Sanchez JJ, Beaumont M, Barnett R, Austin J, Cooper A. 2007. Novel high-resolution characterization of ancient DNA reveals C > U-type base modification events as the sole cause of post mortem miscoding lesions. Nucleic Acids Res. 35:5717-5728.
    • (2007) Nucleic Acids Res , vol.35 , pp. 5717-5728
    • Brotherton, P.1    Endicott, P.2    Sanchez, J.J.3    Beaumont, M.4    Barnett, R.5    Austin, J.6    Cooper, A.7
  • 4
    • 38649110663 scopus 로고    scopus 로고
    • BEAST: Bayesian evolutionary analysis by sampling trees
    • Drummond AJ, Rambaut A. 2007. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol Biol. 7:214.
    • (2007) BMC Evol Biol , vol.7 , pp. 214
    • Drummond, A.J.1    Rambaut, A.2
  • 5
    • 17744381574 scopus 로고    scopus 로고
    • Bayesian coalescent inference of past population dynamics from molecular sequences
    • Drummond AJ, Rambaut A, Shapiro B, Pybus OG. 2005. Bayesian coalescent inference of past population dynamics from molecular sequences. Mol Biol Evol. 22:1185-1192.
    • (2005) Mol Biol Evol , vol.22 , pp. 1185-1192
    • Drummond, A.J.1    Rambaut, A.2    Shapiro, B.3    Pybus, O.G.4
  • 8
    • 34848867598 scopus 로고
    • (30 co-authors). 2007. Whole-genome shotgun sequencing of mitochondria from ancient hair shafts
    • Gilbert MT, Tomsho LP, Rendulic S, et al. (30 co-authors). 2007. Whole-genome shotgun sequencing of mitochondria from ancient hair shafts. Science. 317:1927-1930.
    • (1927) Science , vol.317
    • Gilbert, M.T.1    Tomsho, L.P.2    Rendulic, S.3
  • 9
    • 33751077282 scopus 로고    scopus 로고
    • Green RE, Krause J, Ptak SE, et al. (11 co-authors). 2006. Analysis of onemillion base pairs of Neanderthal DNA. Nature. 444:330-336.
    • Green RE, Krause J, Ptak SE, et al. (11 co-authors). 2006. Analysis of onemillion base pairs of Neanderthal DNA. Nature. 444:330-336.
  • 11
    • 0021688630 scopus 로고
    • DNA sequences from the quagga, an extinct member of the horse family
    • Higuchi R, Bowman B, Freiberger M, Ryder OA, Wilson AC. 1984. DNA sequences from the quagga, an extinct member of the horse family. Nature. 312:282-284.
    • (1984) Nature , vol.312 , pp. 282-284
    • Higuchi, R.1    Bowman, B.2    Freiberger, M.3    Ryder, O.A.4    Wilson, A.C.5
  • 12
    • 34548106742 scopus 로고    scopus 로고
    • Bayesian estimation of sequence damage in ancient DNA
    • Ho SY, Heupink TH, Rambaut A, Shapiro B. 2007. Bayesian estimation of sequence damage in ancient DNA. Mol Biol Evol. 24:1416-1422.
    • (2007) Mol Biol Evol , vol.24 , pp. 1416-1422
    • Ho, S.Y.1    Heupink, T.H.2    Rambaut, A.3    Shapiro, B.4
  • 13
    • 20444427160 scopus 로고    scopus 로고
    • Time dependency of molecular rate estimates and systematic overestimation of recent divergence times
    • Ho SY, Phillips MJ, Cooper A, Drummond AJ. 2005. Time dependency of molecular rate estimates and systematic overestimation of recent divergence times. Mol Biol Evol. 22:1561-1568.
    • (2005) Mol Biol Evol , vol.22 , pp. 1561-1568
    • Ho, S.Y.1    Phillips, M.J.2    Cooper, A.3    Drummond, A.J.4
  • 15
    • 0035581087 scopus 로고    scopus 로고
    • DNA sequences from multiple amplifications reveal artifacts induced by cytosine deamination in ancient DNA
    • Hofreiter M, Jaenicke V, Serre D, Haeseler Av A, Paabo S. 2001. DNA sequences from multiple amplifications reveal artifacts induced by cytosine deamination in ancient DNA. Nucleic Acids Res. 29:4793-4799.
    • (2001) Nucleic Acids Res , vol.29 , pp. 4793-4799
    • Hofreiter, M.1    Jaenicke, V.2    Serre, D.3    Haeseler, A.A.4    Paabo, S.5
  • 17
    • 0020744702 scopus 로고
    • Properties of a neutral allele model with intragenic recombination
    • Hudson RR. 1983. Properties of a neutral allele model with intragenic recombination. Theor Popul Biol. 23:183-201.
    • (1983) Theor Popul Biol , vol.23 , pp. 183-201
    • Hudson, R.R.1
  • 18
    • 35448994420 scopus 로고    scopus 로고
    • Johnson SS, Hebsgaard MB, Christensen TR, et al. (15 co-authors). 2007. Ancient bacteria show evidence of DNA repair. Proc Natl Acad Sci USA. 104:14401-14405.
    • Johnson SS, Hebsgaard MB, Christensen TR, et al. (15 co-authors). 2007. Ancient bacteria show evidence of DNA repair. Proc Natl Acad Sci USA. 104:14401-14405.
  • 19
    • 0000732090 scopus 로고
    • Evolution of protein molecules
    • Munro HN, editor, New York: Academic Press. p
    • Jukes TH, Cantor CR. 1969. Evolution of protein molecules. In: Munro HN, editor. Mammalian protein metabolism. New York: Academic Press. p. 21-132.
    • (1969) Mammalian protein metabolism , pp. 21-132
    • Jukes, T.H.1    Cantor, C.R.2
  • 20
    • 0002556819 scopus 로고
    • On the genealogy of large populations
    • Kingman JFC. 1982a. On the genealogy of large populations. J Appl Probab. 19:27-43.
    • (1982) J Appl Probab , vol.19 , pp. 27-43
    • Kingman, J.F.C.1
  • 22
    • 33751073995 scopus 로고    scopus 로고
    • Noonan JP, Coop G, Kudaravalli S, et al. (11 co-authors). 2006. Sequencing and analysis of Neanderthal genomic DNA. Science. 314:1113-1118.
    • Noonan JP, Coop G, Kudaravalli S, et al. (11 co-authors). 2006. Sequencing and analysis of Neanderthal genomic DNA. Science. 314:1113-1118.
  • 24
    • 0000832946 scopus 로고
    • Ancient DNA: Extraction, characterization, molecular cloning, and enzymatic amplification
    • Pääbo S. 1989. Ancient DNA: extraction, characterization, molecular cloning, and enzymatic amplification. Proc Natl Acad Sci USA. 86:1939-1943.
    • (1989) Proc Natl Acad Sci USA , vol.86 , pp. 1939-1943
    • Pääbo, S.1
  • 25
    • 31144442151 scopus 로고    scopus 로고
    • Poinar HN, Schwarz C, Qi J, et al. (13 co-authors). 2006. Metagenomics to paleogenomics: large-scale sequencing of mammoth DNA. Science. 311:392-394.
    • Poinar HN, Schwarz C, Qi J, et al. (13 co-authors). 2006. Metagenomics to paleogenomics: large-scale sequencing of mammoth DNA. Science. 311:392-394.
  • 27
    • 9444220256 scopus 로고    scopus 로고
    • Shapiro B, Drummond AJ, Rambaut A, et al. (27 co-authors). 2004. Rise and fall of the Beringian steppe bison. Science. 306:1561-1565.
    • Shapiro B, Drummond AJ, Rambaut A, et al. (27 co-authors). 2004. Rise and fall of the Beringian steppe bison. Science. 306:1561-1565.
  • 28
    • 33748783644 scopus 로고    scopus 로고
    • Stiller M, Green RE, Ronan M, et al. (19 co-authors). 2006. Patterns of nucleotide misincorporations during enzymatic amplification and direct large-scale sequencing of ancient DNA. Proc Natl Acad Sci USA. 103:13578-13584.
    • Stiller M, Green RE, Ronan M, et al. (19 co-authors). 2006. Patterns of nucleotide misincorporations during enzymatic amplification and direct large-scale sequencing of ancient DNA. Proc Natl Acad Sci USA. 103:13578-13584.
  • 30
    • 34447337482 scopus 로고    scopus 로고
    • Willerslev E, Cappellini E, Boomsma W, et al. (30 co-authors). 2007. Ancient biomolecules from deep ice cores reveal a forested southern Greenland. Science. 317:111-114.
    • Willerslev E, Cappellini E, Boomsma W, et al. (30 co-authors). 2007. Ancient biomolecules from deep ice cores reveal a forested southern Greenland. Science. 317:111-114.


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.