Analysis of Population Subdivision

Handbook of Statistical Genetics: Third Edition

Volumn 2, Issue , 2008, Pages 980-1020

  Excoffier, L ^a  

^a UNIVERSITY OF BERN   (Switzerland)

Author keywords

AMOVA analysis of molecular variance; ANOVA analysis of variance; Bayesian estimation; Coancestry and kinship coefficient; Euclidean distances; Fixation index; Multiallelic molecular data; Restriction fragment length polymorphism; Stepwise mutation model; Wahlund effect

Indexed keywords

EID: 84873591165     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1002/9780470061619.ch29     Document Type: Chapter

References (165)

1. Ayres, K.L. and Balding, D.J. (1998). Measuring departures from Hardy-Weinberg: a Markov chain Monte Carlo method for estimating the inbreeding coefficient. Heredity 80, 769-777.
2. Ayres, K.L. and Overall, D.J. (1999). Allowing for within-subpopulation inbreeding in forensic match probabilities. Forensic Science International 103, 207.
3. Balding, D.J. (2003). Likelihood-based inference for genetic correlation coefficients. Theoretical Population Biology 63, 221-230.
4. Balding, D.J. and Nichols, R.A. (1995). A method for quantifying differentiation between populations at multi-allelic loci and its implications for investigating identity and paternity. Genetica 96, 3-12.
5. Balloux, F. and Goudet, J. (2002). Statistical properties of population differentiation estimators under stepwise mutation in a finite island model. Molecular Ecology 11, 771-783.
6. Barrai, I. (1971). Subdivision and inbreeding. American Journal of Human Genetics 23, 95-96.
7. Beaumont, M.A. (2005). Adaptation and speciation: what can F-st tell us? Trends in Ecology and Evolution 20, 435-440.
8. Beaumont, M.A. and Balding, D.J. (2004). Identifying adaptive genetic divergence among populations from genome scans. Molecular Ecology 13, 969-980.
9. Beaumont, M.A. and Nichols, R.A. (1996). Evaluating loci for use in the genetic analysis of population structure. Proceedings of the Royal Society London, Series B 263, 1619-1626.
10. Beerli, P. (2006). Comparison of Bayesian and maximum-likelihood inference of population genetic parameters. Bioinformatics 22, 341-345.
11. Beerli, P. and Felsenstein, J. (2001). Maximum likelihood estimation of a migration matrix and effective population sizes in n subpopulations by using a coalescent approach. Proceedings of the National Academy of Sciences of the United States of America 98, 4563-4568.
12. Bertorelle, G. and Excoffier, L. (1998). Inferring admixture proportions from molecular data. Molecular Biology and Evolution 15, 1298-1311.
13. Boussau, B. and Gouy, M. (2006). Efficient likelihood computations with nonreversible models of evolution. Systematic Biology 55, 756-768.
14. Cavalli-Sforza, L.L. (1966). Population structure and human evolution. Proceedings of the Royal Society London, Series B 164, 362-379.
15. Chakraborty, R. and Danker-Hopfe, H. (1991). Analysis of population structure: a comparative study of different estimators of Wright's fixation indices. In Handbook of Statistics, C.R. Rao and R. Chakraborty, eds. Elsevier Science Publishers, Amsterdam, pp. 203-254.
16. Chakraborty, R. and Weiss, K.M. (1988). Admixture as a tool for finding linked genes and detecting that difference from allelic association between loci. Proceedings of the National Academy of Sciences of the United States of America 85, 9119-9123.
17. Chapman, N.H. and Thompson, E.A. (2001). Linkage disequilibrium mapping: the role of population history, size, and structure. Advances in Statistics 42, 413-437.
18. Charlesworth, B. (1998). Measures of divergence between populations and the effect of forces that reduce variability. Molecular Biology and Evolution 15, 538-543.
19. Charlesworth, B., Nordborg, M. and Charlesworth, D. (1997). The effects of local selection, balanced polymorphism and background selection on equilibrium patterns of genetic diversity in subdivided populations. Genetical Research 70, 155-174.
20. Chesser, R.K. (1991). Influence of gene flow and breeding tactics on gene diversity within populations. Genetics 129, 573-583.
21. Chesser, R.K. and Baker, R.J. (1996). Effective sizes and dynamics of uniparentally and diparentally inherited genes. Genetics 144, 1225-1235.
22. Cockerham, C.C. (1969). Variance of gene frequencies. Evolution 23, 72-83.
23. Cockerham, C.C. (1973). Analysis of gene frequencies. Genetics 74, 679-700.
24. Cockerham, C.C. and Weir, B.S. (1983). Variance of actual inbreeding. Theoretical Population Biology 23, 85-109.
25. Cockerham, C.C. and Weir, B.S. (1987). Correlations, descent measures: drift with migration and mutation. Proceedings of the National Academy of Sciences of the United States of America 84, 8512-8514.
26. Cockerham, C.C. and Weir, B.S. (1993). Estimation of gene flow from F-statistics. Evolution 47, 855-863.
27. Corander, J. and Marttinen, P. (2006). Bayesian identification of admixture events using multilocus molecular markers. Molecular Ecology 15, 2833-2843.
28. Corander, J., Waldmann, P. and Sillanpaa, M.J. (2003). Bayesian analysis of genetic differentiation between populations. Genetics 163, 367-374.
29. Crow, J. and Kimura, M. (1970). An Introduction to Population Genetics Theory. Harper and Row, New York.
30. Crow, J.F. and Aoki, K. (1984). Group selection for a polygenic behavioral trait: estimating the degree of population subdivision. Proceedings of the National Academy of Sciences of the United States of America 81, 6073-6077.
31. Dawson, K.J. and Belkhir, K. (2001). A Bayesian approach to the identification of panmictic populations and the assignment of individuals. Genetical Research 78, 59-77.
32. Dupanloup, I., Schneider, S. and Excoffier, L. (2002). A simulated annealing approach to define the genetic structure of populations. Molecular Ecology 11, 2571-2581.
33. Efron, B. (1982). The Jacknife, the Bootstrap and Other Resampling Plans. Regional Conference Series in Applied Mathematics. Society for Industrial Applied Mathematics, Philadelphia, PA.
34. Excoffier, L., Laval, G. and Schneider, S. (2005). Arlequin (version 3.0): an integrated software package for population genetics data analysis. Evolutionary Bioinformatics Online 1, 47-50.
35. Excoffier, L. and Smouse, P. (1994). Using allele frequencies and geographic subdivision to reconstruct gene genealogies within a species. Molecular variance parsimony. Genetics 136, 343-359.
36. Excoffier, L., Smouse, P. and Quattro, J. (1992). Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131, 479-491.
37. Falush, D., Stephens, M. and Pritchard, J.K. (2003a). Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. Genetics 164, 1567-1587.
38. Falush, D., Wirth, T., Linz, B., Pritchard, J.K., Stephens, M., Kidd, M., Blaser, M.J., Graham, D.Y., Vacher, S., Perez-Perez, G.I., Yamaoka, Y., Megraud, F., Otto, K., Reichard, U., Katzowitsch, E., Wang, X., Achtman, M. and Suerbaum, S. (2003b). Traces of human migrations in Helicobacter pylori populations. Science 299, 1582-1585.
39. Felsenstein, J. (1981). Evolutionary trees from DNA sequences: a maximum likelihood approach. Journal of Molecular Evolution 17, 368-376.
40. Foll, M. and Gaggiotti, O. (2006). Identifying the environmental factors that determine the genetic structure of populations. Genetics 174, 875-891.
41. Fontanillas, P., Petit, E. and Perrin, N. (2004). Estimating sex-specific dispersal rates with autosomal markers in hierarchically structured populations. Evolution 58, 886-894.
42. Fu, Y.X. (1997). Coalescent theory for a partially selfing population. Genetics 146, 1489-1499.
43. Gaggiotti, O. and Excoffier, L. (2000). A simple method of removing the effect of a bottleneck and unequal population sizes on pairwise genetic distances. Proceedings of the Royal Society London B 267, 81-87.
44. Gaggiotti, O.E., Lange, O., Rassmann, K. and Gliddon, C. (1999). A comparison of two indirect methods for estimating average levels of gene flow using microsatellite data. Molecular Ecology 8, 1513-1520.
45. Gilmour, J.S.L. and Gregor, J.W. (1939). Demes: a suggested new terminology. Nature 144, 333.
46. Goldstein, D.B., Ruiz-Linares, A., Cavalli-Sforza, L.L. and Feldman, M.W. (1995). Microsatellite loci, genetic distances, and human evolution. Proceedings of the National Academy of Sciences of the United States of America 92, 6723-6727.
47. Goudet, J. (1993). The genetics of geographically structured populations. Ph.D., University of Wales, Bangor.
48. Goudet, J. (1995). Fstat version 1.2: a computer program to calculate F-statistics. Journal of Heredity 86, 485-486.
49. Goudet, J., Raymond, M., De Meeús, T. and Rousset, F. (1996). Testing differentiation in diploid populations. Genetics 144, 1933-1940.
50. Guillot, G., Estoup, A., Mortier, F. and Cosson, J.F. (2005). A spatial statistical model for landscape genetics. Genetics 170, 1261-1280.
51. Guo, S. and Thompson, E. (1992). Performing the exact test of Hardy-Weinberg proportion for multiple alleles. Biometrics 48, 361-372.
52. Herbots, H.M. (1997). The structured coalescent. In Progress in Population Genetics and Human Evolution, P. Donnely and S. Tavaré, eds. Springer-Verlag, New York, pp. 231-255.
53. Hewitt, G.M. (2001). Speciation, hybrid zones and phylogeography-or seeing genes in space and time. Molecular Ecology 10, 537-549.
54. Hill, W.G., Babiker, H.A., Ranford-Cartwright, L.C. and Walliker, D. (1995). Estimation of inbreeding coefficients from genotypic data on multiple alleles, and application to estimation of clonality in malaria parasites. Genetical Research 65, 53-61.
55. Holsinger, K.E., Lewis, P.O. and Dey, D.K. (2002). A Bayesian approach to inferring population structure from dominant markers. Molecular Ecology 11, 1157-1164.
56. Holsinger, K.E. and Mason-Gamer, R.J. (1996). Hierarchical analysis of nucleotide diversity in geographically structured populations. Genetics 142, 629-639.
57. Hudson, R.R., Boos, D.D. and Kaplan, N.L. (1992a). A statistical test for detecting geographic subdivision. Molecular Biology and Evolution 9, 138-151.
58. Hudson, R.R., Slatkin, M. and Maddison, W.P. (1992b). Estimation of levels of gene flow from DNA sequence data. Genetics 132, 583-589.
59. Jaarola, M. and Searle, J.B. (2004). A highly divergent mitochondrial DNA lineage of Microtus agrestis in southern Europe. Heredity 92, 228-234.
60. Jarne, P. (1995). Mating system, bottleneck, and genetic polymorphism in hermaphroditic animals. Genetical Research 65, 193-207.
61. Jorde, L. (1980). The genetic structure of subdivided human populations. In Current Developments in Anthropological Genetics, J. Mielke and M. Crawford, eds. Plenum Press, New York, pp. 135-208.
62. Kelley, J.L., Madeoy, J., Calhoun, J.C., Swanson, W. and Akey, J.M. (2006). Genomic signatures of positive selection in humans and the limits of outlier approaches. Genome Research 16, 980-989.
63. Kitada, S. and Kishino, H. (2004). Simultaneous detection of linkage disequilibrium and genetic differentiation of subdivided populations. Genetics 167, 2003-2013.
64. Kitakado, T., Kitada, S., Kishino, H. and Skaug, H.J. (2006). An integrated-likelihood method for estimating genetic differentiation between populations. Genetics 173, 2073-2082.
65. Leblois, R., Estoup, A. and Rousset, F. (2003). Influence of mutational and sampling factors on the estimation of demographic parameters in a "continuous" population under isolation by distance. Molecular Biology and Evolution 20, 491-502.
66. Lewontin, R.C. and Krakauer, J. (1973). Distribution of gene frequency as a test of the theory of the selective neutrality of polymorphisms. Genetics 74, 175-195.
67. Li, W.H. and Nei, M. (1974). Stable linkage disequilibrium without epistasis in subdivided populations. Theoretical Population Biology 6, 173-183.
68. Long, J.C., Naidu, J.M., Mohrenweiser, H.W., Gershowitz, H., Johnson, P.L., Wood, J.W. and Smouse, P.E. (1986). Genetic characterization of Gainj-and Kalam-speaking peoples of Papua New Guinea. American Journal of Physical Anthropology 70, 75-96.
69. Luikart, G., England, P.R., Tallmon, D., Jordan, S. and Taberlet, P. (2003). The power and promise of population genomics: from genotyping to genome typing. Nature Reviews Genetics 4, 981-994.
70. Lynch, M. (1991). Analysis of population genetic structure by DNA fingerprinting. Experientia Supplementum 58, 113-126.
71. Lynch, M. and Crease, T.J. (1990). The analysis of population survey data on DNA sequence variation. Molecular Biology and Evolution 7, 377-394.
72. Lynch, M. and Milligan, B.G. (1994). Analysis of population genetic structure with RAPD markers. Molecular Ecology 3, 91-99.
73. Magri, D., Vendramin, G.G., Comps, B., Dupanloup, I., Geburek, T., Gomory, D., Latalowa, M., Litt, T., Paule, L., Roure, J.M., Tantau, I., van der Knaap, W.O., Petit, R.J. and de Beaulieu, J.L. (2006). A new scenario for the quaternary history of European beech populations: palaeobotanical evidence and genetic consequences. New Phytologist 171, 199-221.
74. Malécot, G. (1948). Les Mathématiques de l'Hérédité. Masson, Paris.
75. Manly, B.F.J. (1991). Randomization and Monte Carlo methods in Biology. Chapman and Hall, London.
76. Marchini, J., Cardon, L.R., Phillips, M.S. and Donnelly, P. (2004). The effects of human population structure on large genetic association studies. Nature Genetics 36, 512-517.
77. Marjoram, P. and Donnelly, P. (1994). Pairwise comparisons of mitochondrial DNA sequences in subdivided populations and implications for early human evolution. Genetics 136, 673-683.
78. Maruyama, K. and Tachida, H. (1992). Genetic variability and geographic structure in partially selfing populations. Japanese Journal of Genetics 67, 39-51.
79. Mehta, C.R. and Patel, N.R. (1983). A network algorithm for performing Fisher's exact test in rxc contingency tables. Journal of the American Statistical Association 78, 427-434.
80. Michalakis, Y. and Excoffier, L. (1996). A generic estimation of population subdivision using distances between alleles with special reference for microsatellite loci. Genetics 142, 1061-1064.
81. Murray, M.C. and Hare, M.P. (2006). A genomic scan for divergent selection in a secondary contact zone between Atlantic and Gulf of Mexico oysters, Crassostrea virginica. Molecular Ecology 15, 4229-4242.
82. Nagylaki, T. (1983). The robustness of neutral models of geographical variation. Theoretical Population Biology 24, 268-294.
83. Nagylaki, T. (1985). Homozygosity, effective number of alleles, and interdeme differentiation in subdivided populations. Proceedings of the National Academy of Sciences of the United States of America 82, 8611-8613.
84. Nagylaki, T. (1998a). The expected number of heterozygous sites in a subdivided population. Genetics 149, 1599-1604.
85. Nagylaki, T. (1998b). Fixation indices in subdivided populations. Genetics 148, 1325-1332.
86. Nei, M. (1972). Genetic distance between populations. American Naturalist 106, 283-292.
87. Nei, M. (1973). Analysis of gene diversity in subdivided populations. Proceedings of the National Academy of Sciences of the United States of America 70, 3321-3323.
88. Nei, M. (1977). F-statistics and analysis of gene diversity in subdivided populations. Annals of Human Genetics 41, 225-233.
89. Nei, M. (1986). Definition and estimation of fixation indices. Evolution 40, 643-645.
90. Nei, M. (1987). Molecular Evolutionary Genetics. Columbia University Press, New York.
91. Nei, M., Chakravarti, A. and Tateno, Y. (1977). Mean and variance of FST in a finite number of incompletely isolated populations. Theoretical Population Biology 11, 291-306.
92. Nei, M. and Chesser, R.K. (1983). Estimation of fixation indices and gene diversities. Annals of Human Genetics 47, 253-259.
93. Nei, M. and Kumar, S. (2000). Molecular Evolution and Phylogenetics. Oxford University Press, Oxford.
94. Nei, M. and Li, W.H. (1973). Linkage disequilibrium in subdivided populations. Genetics 75, 213-219.
95. Nicholson, G., Smith, A.V., Jonsson, F., Gustafsson, O. and Stefansson, K. (2002). Assessing population differentiation and isolation from single-nucleotide polymorphism data. Journal of the Royal Statistics Society, Series B 64, 695-715.
96. Nielsen, R. (2001). Statistical tests of selective neutrality in the age of genomics. Heredity 86, 641-647.
97. Nordborg, M. (1997). Structured coalescent processes on different time scales. Genetics 146, 1501-1514.
98. Nordborg, M. and Donnelly, P. (1997). The coalescent process with selfing. Genetics 146, 1185-1195.
99. Ohta, T. (1982). Linkage disequilibrium due to random genetic drift in finite subdivided populations. Proceedings of the National Academy of Sciences of the United States of America 79, 1940-1944.
100. Ohta, T. and Kimura, M. (1969). Linkage disequilibrium due to random genetic drift. Genetical Research 13, 47-55.
101. Ometto, L., Glinka, S., De Lorenzo, D. and Stephan, W. (2005). Inferring the effects of demography and selection on Drosophila melanogaster populations from a chromosome-wide scan of DNA variation. Molecular Biology and Evolution 22, 2119-2130.
102. Peakall, R., Smouse, P.E. and Huff, D.R. (1995). Evolutionary implications of allozyme and RAPD variation in diploid populations if dioecious buffalograss "Buchloe dactyloides". Molecular Ecology 4, 135-147.
103. Petit, E., Balloux, F. and Goudet, J. (2001). Sex-biased dispersal in a migratory bat: a characterization using sex-specific demographic parameters. Evolution 55, 635-640.
104. Piontkivska, H. (2004). Efficiencies of maximum likelihood methods of phylogenetic inferences when different substitution models are used. Molecular Phylogenetics and Evolution 31, 865-873.
105. Pollak, E. and Sabran, M. (1992). On the theory of partially inbreeding finite populations. III. Fixation probabilities under partial selfing when heterozygotes are intermediate in viability. Genetics 131, 979-985.
106. Pons, O. and Chaouche, K. (1995). Estimation, variance and optimal sampling of gene diversity. II. Diploid locus. Theoretical and Applied Genetics 91, 122-130.
107. Pritchard, J.K. and Donnelly, P. (2001). Case-control studies of association in structured or admixed populations. Theoretical Population Biology 60, 227-237.
108. Pritchard, J.K. and Feldman, M.W. (1996). Statistics for microsatellite variation based on coalescence. Theoretical Population Biology 50, 325-344.
109. Pritchard, J.K., Stephens, M. and Donnelly, P. (2000a). Inference of population structure using multilocus genotype data. Genetics 155, 945-959.
110. Pritchard, J.K., Stephens, M., Rosenberg, N.A. and Donnelly, P. (2000b). Association mapping in structured populations. American Journal of Human Genetics 67, 170-181.
111. Rannala, B. and Hartigan, J.A. (1996). Estimating gene flow in island populations. Genetical Research 67, 147-158.
112. Raymond, M. and Rousset, F. (1995a). An exact test for population differentiation. Evolution 49, 1280-1283.
113. Raymond, M. and Rousset, F. (1995b). GENEPOP Version 1.2: population genetics software for exat tests and ecumenicism. Journal of Heredity 86, 248-249.
114. Reynolds, J., Weir, B.S. and Cockerham, C.C. (1983). Estimation for the coancestry coefficient: basis for a short-term genetic distance. Genetics 105, 767-779.
115. Robertson, A. and Hill, W.G. (1984). Deviations from Hardy-Weinberg proportions: sampling variances and use in estimation of inbreeding coefficients. Genetics 107, 703-718.
116. Rousset, F. (1996). Equilibrium values of measures of population subdivision for stepwise mutation processes. Genetics 142, 1357-1362.
117. Rousset, F. (1997). Genetic differentiation and estimation of gene flow from F-statistics under isolation by distance. Genetics 145, 1219-1228.
118. Rousset, F. (2000). Inferences from spatial population genetics. In Handbook of Statistical Genetics, D. Balding, M. Bishop and C. Cannings, eds. John Wiley & Sons, Chichester.
119. Rousset, F. (2002). Inbreeding and relatedness coefficients: what do they measure? Heredity 88, 371-380.
120. Rousset, F. (2004). Genetic Structure and Selection in Subdivided Populations. Princeton University Press, Princeton, NJ.
121. Rousset, F. and Raymond, M. (1995). Testing heterozygote excess and deficiency. Genetics 140, 1413-1419.
122. Shoemaker, J., Painter, I. and Weir, B.S. (1998). A Bayesian characterization of Hardy-Weinberg disequilibrium. Genetics 149, 2079-2088.
123. Simonsen, K.L., Churchill, G.A. and Aquadro, C.F. (1995). Properties of statistical tests of neutrality for DNA polymorphism data. Genetics 141, 413-429.
124. Slatkin, M. (1987). The average number of sites separating DNA sequences drawn from a subdivided population. Theoretical Population Biology 32, 42-49.
125. Slatkin, M. (1991). Inbreeding coefficients and coalescence times. Genetical Research 58, 167-175.
126. Slatkin, M. (1993). Isolation by distance in equilibrium and non-equilibrium populations. Evolution 47, 264-279.
127. Slatkin, M. (1995). A measure of population subdivision based on microsatellite allele frequencies. Genetics 139, 457-462.
128. Slatkin, M. and Barton, N.H. (1989). A comparison of three indirect methods for estimating average levels of gene flow. Evolution 43, 1349-1368.
129. Slatkin, M. and Voelm, L. (1991). FST in a hierarchical island model. Genetics 127, 627-6629.
130. Stewart, N. and Excoffier, L. (1996). Assessing population genetic structure and variability with RAPD data: application to "vaccinium macrocarpon" (American cranberry). Journal of Evolutionary Biology 9, 153-171.
131. Storz, J.F., Payseur, B.A. and Nachman, M.W. (2004). Genome scans of DNA variability in humans reveal evidence for selective sweeps outside of Africa. Molecular Biology and Evolution 21, 1800-1811.
132. Strobeck, K. (1987). Average number of nucleotide differences in a sample from a single subpopulation: a test for population subdivision. Genetics 117, 149-153.
133. Swofford, D.L., Olsen, G.J., Waddell, P.J. and Hillis, D.M. (1996). Phylogenetic inference. In Molecular Systematics, D.M. Hillis, C. Moritz and B.K. Mable, eds. Sinauer Associates, Inc., Sunderland, MA, pp. 407-514.
134. Taberlet, P., Fumagalli, L., Wust-Saucy, A.G. and Cosson, J.F. (1998). Comparative phylogeography and postglacial colonization routes in Europe. Molecular Ecology 7, 453-464.
135. Tajima, F. (1993). Statistical analysis of DNA polymorphism. Japanese Journal of Genetics 68, 567-595.
136. Takahata, N. and Palumbi, S.R. (1985). Extranuclear differentiation and gene flow in the finite island model. Genetics 109, 441-457.
137. Takezaki, N. and Nei, M. (1996). Genetic distances and reconstruction of phylogenetic trees from microsatellite DNA. Genetics 144, 389-399.
138. Templeton, A.R. (2004). Statistical phylogeography: methods of evaluating and minimizing inference errors. Molecular Ecology 13, 789-809.
139. Templeton, A.R., Routman, E. and Phillips, C.A. (1995). Separating population structure from population history: a cladistic analysis of the geographical distribution of mitochondrial DNA haplotypes in the tiger salamander, Ambystoma tigrinum. Genetics 140, 767-782.
140. Vitalis, R. (2002). Sex-specific genetic differentiation and coalescence times: estimating sex-biased dispersal rates. Molecular Ecology 11, 125-138.
141. Wahlund, S. (1928). Zusammensetzung von populationen und korrelationerscheinungen vom standpunkt der vererbungslehre aus betrachtet. Hereditas 11, 65-106.
142. Wakeley, J. (1998). Segregating sites in Wright's island model. Theoretical Population Biology 53, 166-174.
143. Wang, J. (1997a). Effective size and F-statistics of subdivided populations. I. Monoecious species with partial selfing. Genetics 146, 1453-1463.
144. Wang, J. (1997b). Effective size and F-statistics of subdivided populations. II. Dioecious species. Genetics 146, 1465-1474.
145. Weber, J.L. and Wong, C. (1993). Mutation of human short tandem repeats. Human Molecular Genetics 2, 1123-1128.
146. Weir, B.S. (1996). Genetic Data Analysis II: Methods for Discrete Population Genetic Data. Sinauer Associates, Inc., Sunderland, MA.
147. Weir, B.S. and Basten, C.J. (1990). Sampling strategies for distances between DNA sequences. Biometrics 46, 551-582.
148. Weir, B.S. and Cockerham, C.C. (1984). Estimating F-statistics for the analysis of population structure. Evolution 38, 1358-1370.
149. Weir, B.S. and Hill, W.G. (2002). Estimating F-statistics. Annual Review of Genetics 36, 721-750.
150. Wilding, C.S., Butlin, R.K. and Grahame, J.W. (2001). Differential gene exchange between parapatric morphs of Littorina saxatilis detected using AFLP markers. Journal of Evolutionary Biology 14, 611-619.
151. Wilkinson-Herbots, H.M. (1998). Genealogy and subpopulation differentiation under various models of population structure. Journal of Mathematical Biolology 37, 535-585.
152. Wilkinson-Herbots, H.M. and Ettridge, R. (2004). The effect of unequal migration rates on FST. Theoretical Population Biology 66, 185-197.
153. Williamson, S.H., Hernandez, R., Fledel-Alon, A., Zhu, L., Nielsen, R. and Bustamante, C.D. (2005). Simultaneous inference of selection and population growth from patterns of variation in the human genome. Proceedings of the National Academy of Sciences of the United States of America 102, 7882-7887.
154. Wilson, G.A. and Rannala, B. (2003). Bayesian inference of recent migration rates using multilocus genotypes. Genetics 163, 1177-1191.
155. Wright, S. (1921). Systems of mating. Genetics 6, 111-178.
156. Wright, S. (1922). Coefficients of inbreeding and relationship. American Naturalist 56, 330-338.
157. Wright, S. (1932). The roles of mutation, inbreeding, crossbreeding and selection in evolution In Proceedings of the 6th International Congress of Genetics. Vol. 1. Brooklyn Botanic Garden, Menasha, pp. 356-366.
158. Wright, S. (1943). Isolation by distance. Genetics 28, 114-138.
159. Wright, S. (1946). Isolation by distance under diverse systems of mating. Genetics 31, 39-59.
160. Wright, S. (1951). The genetical structure of populations. Annals of Eugenics 15, 323-354.
161. Wright, S. (1965). The interpretation of population structure by F-statistics with special regard to systems of mating. Evolution 19, 395-420.
162. Wright, S. (1969). The Theory of Gene Frequencies. The University of Chicago Press, Chicago, IL.
163. Wright, S. (1982). The shifting balance theory and macroevolution. Annual Review of Genetics 16, 1-19.
164. Zhivotovsky, L.A. (1999). Estimating population structure in diploids with multilocus dominant DNA markers. Molecular Ecology 8, 907-913.
165. Zhivotovsky, L.A. and Feldman, M.W. (1995). Microsatellite variability and genetic distances. Proceedings of the National Academy of Sciences of the United States of America 92, 11549-11552.