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Volumn 38, Issue 13, 2010, Pages

A fluorescence-based reporter substrate for monitoring RNA editing in trypanosomatid pathogens

Author keywords

[No Author keywords available]

Indexed keywords

CHEMICAL COMPOUND; EDITOSOME INHIBITOR; KINETOPLASTID RNA EDITING LIGASE 1; RIBOZYME; RNA; RNA DERIVATIVE; UNCLASSIFIED DRUG;

EID: 77955250093     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkq333     Document Type: Article
Times cited : (15)

References (41)
  • 1
    • 0032871423 scopus 로고    scopus 로고
    • Protozoan paradigms for cell biology
    • Vickerman,K. and Coombs,G.H. (1999) Protozoan paradigms for cell biology. J. Cell Sci., 112(Pt 17), 2797-2798.
    • (1999) J. Cell Sci. , vol.112 , Issue.PT 17 , pp. 2797-2798
    • Vickerman, K.1    Coombs, G.H.2
  • 4
    • 0035185867 scopus 로고    scopus 로고
    • Uptake and mode of action of drugs used against sleeping sickness
    • Denise,H. and Barrett,M.P. (2001) Uptake and mode of action of drugs used against sleeping sickness. Biochem. Pharmacol., 61, 1-5.
    • (2001) Biochem. Pharmacol. , vol.61 , pp. 1-5
    • Denise, H.1    Barrett, M.P.2
  • 5
    • 0142258170 scopus 로고    scopus 로고
    • Chemotherapy of human African trypanosomiasis: current, future prospects
    • Fairlamb,A.H. (2003) Chemotherapy of human African trypanosomiasis: current and future prospects. Trends Parasitol., 19, 488-494.
    • (2003) Trends Parasitol. , vol.19 , pp. 488-494
    • Fairlamb, A.H.1
  • 6
    • 33847092850 scopus 로고    scopus 로고
    • Drugs and drug resistance in African trypanosomiasis
    • Delespaux,V. and de Koning,H.P. (2007) Drugs and drug resistance in African trypanosomiasis. Drug Resist. Updat., 10, 30-50.
    • (2007) Drug Resist. Updat. , vol.10 , pp. 30-50
    • Delespaux, V.1    de Koning, H.P.2
  • 7
    • 33646870148 scopus 로고    scopus 로고
    • Compositionally and functionally distinct editosomes in Trypanosoma brucei
    • Panigrahi,A.K., Ernst,N.L., Domingo,G.J., Fleck,M., Salavati,R. and Stuart,K.D. (2006) Compositionally and functionally distinct editosomes in Trypanosoma brucei. RNA, 12, 1038-1049.
    • (2006) RNA , vol.12 , pp. 1038-1049
    • Panigrahi, A.K.1    Ernst, N.L.2    Domingo, G.J.3    Fleck, M.4    Salavati, R.5    Stuart, K.D.6
  • 9
    • 0030928201 scopus 로고    scopus 로고
    • Purification of a functional enzymatic editing complex from Trypanosoma brucei mitochondria
    • Rusche,L.N., Cruz-Reyes,J., Piller,K.J. and Sollner-Webb,B. (1997) Purification of a functional enzymatic editing complex from Trypanosoma brucei mitochondria. EMBO J., 16, 4069-4081.
    • (1997) EMBO J. , vol.16 , pp. 4069-4081
    • Rusche, L.N.1    Cruz-Reyes, J.2    Piller, K.J.3    Sollner-Webb, B.4
  • 10
    • 0027942565 scopus 로고
    • RNA editing: transfer of genetic information from gRNA to precursor mRNA in vitro
    • Seiwert,S.D. and Stuart,K. (1994) RNA editing: transfer of genetic information from gRNA to precursor mRNA in vitro. Science, 266, 114-117.
    • (1994) Science , vol.266 , pp. 114-117
    • Seiwert, S.D.1    Stuart, K.2
  • 11
    • 0036364353 scopus 로고    scopus 로고
    • RNA editing: complexity and complications
    • Stuart,K. and Panigrahi,A.K. (2002) RNA editing: complexity and complications. Mol. Microbiol., 45, 591-596.
    • (2002) Mol. Microbiol. , vol.45 , pp. 591-596
    • Stuart, K.1    Panigrahi, A.K.2
  • 13
    • 0036235406 scopus 로고    scopus 로고
    • Assembly and function of the RNA editing complex in Trypanosoma brucei requires band III protein
    • Huang,C.E., O'Hearn,S.F. and Sollner-Webb,B. (2002) Assembly and function of the RNA editing complex in Trypanosoma brucei requires band III protein. Mol. Cell Biol., 22, 3194-3203.
    • (2002) Mol. Cell Biol. , vol.22 , pp. 3194-3203
    • Huang, C.E.1    O'Hearn, S.F.2    Sollner-Webb, B.3
  • 14
    • 0142091443 scopus 로고    scopus 로고
    • Trypanosoma brucei RNA editing complex: band II is structurally critical and maintains band V ligase, which is nonessential
    • O'Hearn,S.F., Huang,C.E., Hemann,M., Zhelonkina,A. and Sollner-Webb,B. (2003) Trypanosoma brucei RNA editing complex: band II is structurally critical and maintains band V ligase, which is nonessential. Mol. Cell Biol., 23, 7909-7919.
    • (2003) Mol. Cell Biol. , vol.23 , pp. 7909-7919
    • O'Hearn, S.F.1    Huang, C.E.2    Hemann, M.3    Zhelonkina, A.4    Sollner-Webb, B.5
  • 15
    • 0037805672 scopus 로고    scopus 로고
    • TbMP44 is essential for RNA editing and structural integrity of the editosome in Trypanosoma brucei
    • Wang,B., Ernst,N.L., Palazzo,S.S., Panigrahi,A.K., Salavati,R. and Stuart,K. (2003) TbMP44 is essential for RNA editing and structural integrity of the editosome in Trypanosoma brucei. Eukaryot. Cell, 2, 578-587.
    • (2003) Eukaryot. Cell , vol.2 , pp. 578-587
    • Wang, B.1    Ernst, N.L.2    Palazzo, S.S.3    Panigrahi, A.K.4    Salavati, R.5    Stuart, K.6
  • 17
    • 33646189413 scopus 로고    scopus 로고
    • KREPA4, an RNA binding protein essential for editosome integrity and survival of Trypanosoma brucei
    • Salavati,R., Ernst,N.L., O'Rear,J., Gilliam,T., Tarun,S. Jr and Stuart,K. (2006) KREPA4, an RNA binding protein essential for editosome integrity and survival of Trypanosoma brucei. RNA, 12, 819-831.
    • (2006) RNA , vol.12 , pp. 819-831
    • Salavati, R.1    Ernst, N.L.2    O'Rear, J.3    Gilliam, T.4    Tarun S., Jr.5    Stuart, K.6
  • 18
    • 34247340565 scopus 로고    scopus 로고
    • An essential role of KREPB4 in RNA editing and structural integrity of the editosome in Trypanosoma brucei
    • Babbarwal,V.K., Fleck,M., Ernst,N.L., Schnaufer,A. and Stuart,K. (2007) An essential role of KREPB4 in RNA editing and structural integrity of the editosome in Trypanosoma brucei. RNA, 13, 737-744.
    • (2007) RNA , vol.13 , pp. 737-744
    • Babbarwal, V.K.1    Fleck, M.2    Ernst, N.L.3    Schnaufer, A.4    Stuart, K.5
  • 19
    • 37549054714 scopus 로고    scopus 로고
    • RNA editing in Trypanosoma brucei requires three different editosomes
    • Carnes,J., Trotter,J.R., Peltan,A., Fleck,M. and Stuart,K. (2008) RNA editing in Trypanosoma brucei requires three different editosomes. Mol. Cell Biol., 28, 122-130.
    • (2008) Mol. Cell Biol. , vol.28 , pp. 122-130
    • Carnes, J.1    Trotter, J.R.2    Peltan, A.3    Fleck, M.4    Stuart, K.5
  • 20
    • 44149103662 scopus 로고    scopus 로고
    • Trypanosoma brucei RNA editing protein TbMP42 (band VI) is crucial for the endonucleolytic cleavages but not the subsequent steps of U-deletion and U-insertion
    • Law,J.A., O'Hearn,S.F. and Sollner-Webb,B. (2008) Trypanosoma brucei RNA editing protein TbMP42 (band VI) is crucial for the endonucleolytic cleavages but not the subsequent steps of U-deletion and U-insertion. RNA, 14, 1187-1200.
    • (2008) RNA , vol.14 , pp. 1187-1200
    • Law, J.A.1    O'Hearn, S.F.2    Sollner-Webb, B.3
  • 21
    • 38649125860 scopus 로고    scopus 로고
    • KREPA6 is an RNA-binding protein essential for editosome integrity and survival of Trypanosoma brucei
    • Tarun,S.Z. Jr, Schnaufer,A., Ernst,N.L., Proff,R., Deng,J., Hol,W. and Stuart,K. (2008) KREPA6 is an RNA-binding protein essential for editosome integrity and survival of Trypanosoma brucei. RNA, 14, 347-358.
    • (2008) RNA , vol.14 , pp. 347-358
    • Tarun S.Z., Jr.1    Schnaufer, A.2    Ernst, N.L.3    Proff, R.4    Deng, J.5    Hol, W.6    Stuart, K.7
  • 22
    • 0035896357 scopus 로고    scopus 로고
    • An RNA ligase essential for RNA editing and survival of the bloodstream form of Trypanosoma brucei
    • Schnaufer,A., Panigrahi,A.K., Panicucci,B., Igo,R.P. Jr, Wirtz,E., Salavati,R. and Stuart,K. (2001) An RNA ligase essential for RNA editing and survival of the bloodstream form of Trypanosoma brucei. Science, 291, 2159-2162.
    • (2001) Science , vol.291 , pp. 2159-2162
    • Schnaufer, A.1    Panigrahi, A.K.2    Panicucci, B.3    Igo R.P., Jr.4    Wirtz, E.5    Salavati, R.6    Stuart, K.7
  • 23
    • 0029942430 scopus 로고    scopus 로고
    • Direct visualization of uridylate deletion in vitro suggests a mechanism for kinetoplastid RNA editing
    • Seiwert,S.D., Heidmann,S. and Stuart,K. (1996) Direct visualization of uridylate deletion in vitro suggests a mechanism for kinetoplastid RNA editing. Cell, 84, 831-841.
    • (1996) Cell , vol.84 , pp. 831-841
    • Seiwert, S.D.1    Heidmann, S.2    Stuart, K.3
  • 24
    • 0033762432 scopus 로고    scopus 로고
    • Uridylate addition and RNA ligation contribute to the specificity of kinetoplastid insertion RNA editing
    • Igo,R.P. Jr, Palazzo,S.S., Burgess,M.L., Panigrahi,A.K. and Stuart,K. (2000) Uridylate addition and RNA ligation contribute to the specificity of kinetoplastid insertion RNA editing. Mol. Cell Biol., 20, 8447-8457.
    • (2000) Mol. Cell Biol. , vol.20 , pp. 8447-8457
    • Igo R.P., Jr.1    Palazzo, S.S.2    Burgess, M.L.3    Panigrahi, A.K.4    Stuart, K.5
  • 26
    • 0036236872 scopus 로고    scopus 로고
    • A hammerhead ribozyme substrate and reporter for in vitro kinetoplastid RNA editing
    • Wang,B., Salavati,R., Heidmann,S. and Stuart,K. (2002) A hammerhead ribozyme substrate and reporter for in vitro kinetoplastid RNA editing. RNA, 8, 548-554.
    • (2002) RNA , vol.8 , pp. 548-554
    • Wang, B.1    Salavati, R.2    Heidmann, S.3    Stuart, K.4
  • 29
    • 0031717181 scopus 로고    scopus 로고
    • Investigating the mechanism and machinery of RNA editing
    • Stuart,K., Kable,M.L., Allen,T.E. and Lawson,S. (1998) Investigating the mechanism and machinery of RNA editing. Methods, 15, 3-14.
    • (1998) Methods , vol.15 , pp. 3-14
    • Stuart, K.1    Kable, M.L.2    Allen, T.E.3    Lawson, S.4
  • 31
    • 3142725114 scopus 로고    scopus 로고
    • Identification and characterization of trypanosome RNA-editing complex components
    • Stuart,K., Panigrahi,A.K. and Schnaufer,A. (2004) Identification and characterization of trypanosome RNA-editing complex components. Methods Mol. Biol., 265, 273-291.
    • (2004) Methods Mol. Biol. , vol.265 , pp. 273-291
    • Stuart, K.1    Panigrahi, A.K.2    Schnaufer, A.3
  • 32
  • 33
    • 0037417236 scopus 로고    scopus 로고
    • Kinetoplastid RNA editing ligases: complex association, characterization, and substrate requirements
    • Palazzo,S.S., Panigrahi,A.K., Igo,R.P., Salavati,R. and Stuart,K. (2003) Kinetoplastid RNA editing ligases: complex association, characterization, and substrate requirements. Mol. Biochem. Parasitol., 127, 161-167.
    • (2003) Mol. Biochem. Parasitol. , vol.127 , pp. 161-167
    • Palazzo, S.S.1    Panigrahi, A.K.2    Igo, R.P.3    Salavati, R.4    Stuart, K.5
  • 35
    • 0033003760 scopus 로고    scopus 로고
    • A simple statistical parameter for use in evaluation and validation of high throughput screening assays
    • Zhang,J.H., Chung,T.D. and Oldenburg,K.R. (1999) A simple statistical parameter for use in evaluation and validation of high throughput screening assays. J. Biomol. Screen., 4, 67-73.
    • (1999) J. Biomol. Screen. , vol.4 , pp. 67-73
    • Zhang, J.H.1    Chung, T.D.2    Oldenburg, K.R.3
  • 37
    • 0036790939 scopus 로고    scopus 로고
    • Bacteriophage T4 RNA ligase 2 (gp24 1) exemplifies a family of RNA ligases found in all phylogenetic domains
    • Ho,C.K. and Shuman,S. (2002) Bacteriophage T4 RNA ligase 2 (gp24.1) exemplifies a family of RNA ligases found in all phylogenetic domains. Proc. Natl Acad. Sci. USA, 99, 12709-12714.
    • (2002) Proc. Natl Acad. Sci. USA , vol.99 , pp. 12709-12714
    • Ho, C.K.1    Shuman, S.2
  • 39
    • 70349102542 scopus 로고    scopus 로고
    • An electrochemiluminescent aptamer switch for a high-throughput assay of an RNA editing reaction
    • Liang,S. and Connell,G.J. (2009) An electrochemiluminescent aptamer switch for a high-throughput assay of an RNA editing reaction. RNA, 15, 1929-1938.
    • (2009) RNA , vol.15 , pp. 1929-1938
    • Liang, S.1    Connell, G.J.2
  • 40
    • 0346850864 scopus 로고    scopus 로고
    • In vitro RNA editing in pea mitochondria requires NTP or dNTP, suggesting involvement of an RNA helicase
    • Takenaka,M. and Brennicke,A. (2003) In vitro RNA editing in pea mitochondria requires NTP or dNTP, suggesting involvement of an RNA helicase. J. Biol. Chem., 278, 47526-47533.
    • (2003) J. Biol. Chem. , vol.278 , pp. 47526-47533
    • Takenaka, M.1    Brennicke, A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.