-
1
-
-
56249134213
-
Discovery of drug-like inhibitors of an essential RNA-editing ligase in Trypanosoma brucei
-
Amaro RE, Schnaufer A, Interthal H, Hol W, Stuart KD, McCammon JA. 2008. Discovery of drug-like inhibitors of an essential RNA-editing ligase in Trypanosoma brucei. Proc Natl Acad Sci 105: 17278-17283.
-
(2008)
Proc Natl Acad Sci
, vol.105
, pp. 17278-17283
-
-
Amaro, R.E.1
Schnaufer, A.2
Interthal, H.3
Hol, W.4
Stuart, K.D.5
McCammon, J.A.6
-
2
-
-
0037450771
-
Isolation of a U-insertion/deletion editing complex from Leishmania tarentolae mitochondria
-
DOI 10.1093/emboj/cdg083
-
Aphasizhev R, Aphasizheva I, Nelson RE, Gao G, Simpson AM, Kang X, Falick AM, Sbicego S, Simpson L. 2003. Isolation of a U-insertion/deletion editing complex from Leishmania tarentolae mitochondria. EMBO J 22: 913-924. (Pubitemid 36227793)
-
(2003)
EMBO Journal
, vol.22
, Issue.4
, pp. 913-924
-
-
Aphasizhev, R.1
Aphasizheva, I.2
Nelson, R.E.3
Gao, G.4
Simpson, A.M.5
Kang, X.6
Falick, A.M.7
Sbicego, S.8
Simpson, L.9
-
3
-
-
0022552305
-
Major transcript of the frameshifted coxll gene from trypanosome mitochondria contains four nucleotides that are not encoded in the DNA
-
Benne R, Van den Burg J, Brakenhoff JP, Sloof P, Van Boom JH, Tromp MC. 1986. Major transcript of the frameshifted coxII gene from trypanosome mitochondria contains four nucleotides that are not encoded in the DNA. Cell 46: 819-826. (Pubitemid 16027930)
-
(1986)
Cell
, vol.46
, Issue.6
, pp. 819-826
-
-
Benne, R.1
Van Den Burg, J.2
Brakenhoff, J.P.J.3
-
4
-
-
20944432999
-
Quantitative measurement of changes in Ab40 in the rat brain and CSF following treatment with the g-secretase inhibitor, N2-[(2S)-2-(3,5- Difluorophenyl)-2- Hydroxyethanoyl]-N1-[(7S)-5-methyl-6-oxo-6,7-dihydro- 5Hdibenzo[ b,d]azepin-7-yl]-L-alaninamide (LY-411575)
-
Best JD, Jay MT, Otu F, Ma J, Nadin A, Ellis S, Lewis HD, Pattison C, Reilly M, Harrison T, et al. 2005. Quantitative measurement of changes in Ab40 in the rat brain and CSF following treatment with the g-secretase inhibitor, N2-[(2S)-2-(3,5-Difluorophenyl)-2- hydroxyethanoyl]-N1-[(7S)-5-methyl-6-oxo-6,7- dihydro-5Hdibenzo[ b,d]azepin-7-yl]-L-alaninamide (LY-411575). J Pharmacol Exp Ther 313: 902-908.
-
(2005)
J Pharmacol Exp Ther
, vol.313
, pp. 902-908
-
-
Best, J.D.1
Jay, M.T.2
Otu, F.3
Ma, J.4
Nadin, A.5
Ellis, S.6
Lewis, H.D.7
Pattison, C.8
Reilly, M.9
Harrison, T.10
-
5
-
-
0025189769
-
A model for RNA editing in kinetoplastid mitochondria: 'Guide' RNA molecules transcribed from maxicircle DNA provide the edited information
-
DOI 10.1016/0092-8674(90)90735-W
-
Blum B, Bakalara N, Simpson L. 1990. A model for RNA editing in kinetoplastidmitochondria: ''Guide''RNAmolecules transcribed from maxicircle DNA provide the edited information. Cell 60: 189-198. (Pubitemid 20055914)
-
(1990)
Cell
, vol.60
, Issue.2
, pp. 189-198
-
-
Blum, B.1
Bakalara, N.2
Simpson, L.3
-
6
-
-
0033525864
-
A cis-acting A-U sequence element induces kinetoplastid U-insertions
-
Brown LM, Burbach BJ, McKenzie BA, Connell GJ. 1999. A cis-acting A-U sequence element induces kinetoplastid U-insertions. J Biol Chem 274: 6295-6304.
-
(1999)
J Biol Chem
, vol.274
, pp. 6295-6304
-
-
Brown, L.M.1
Burbach, B.J.2
McKenzie, B.A.3
Connell, G.J.4
-
7
-
-
0029804892
-
Guide RNA-directed uridine insertion RNA editing in vitro
-
Byrne EM, Connell GJ, Simpson L. 1996. Guide RNA-directed uridine insertion RNA editing in vitro. EMBO J 15: 6758-6765. (Pubitemid 26413807)
-
(1996)
EMBO Journal
, vol.15
, Issue.23
, pp. 6758-6765
-
-
Byrne, E.M.1
Connell, G.J.2
Simpson, L.3
-
8
-
-
37549054714
-
RNA editing in Trypanosoma brucei requires three different editosomes
-
Carnes J, Trotter JR, Peltan A, Fleck M, Stuart K. 2008. RNA editing in Trypanosoma brucei requires three different editosomes. Mol Cell Biol 28: 122-130.
-
(2008)
Mol Cell Biol
, vol.28
, pp. 122-130
-
-
Carnes, J.1
Trotter, J.R.2
Peltan, A.3
Fleck, M.4
Stuart, K.5
-
9
-
-
0030012551
-
Affinity selection-amplification from randomized ribooligonucleotide pools
-
DOI 10.1016/S0076-6879(96)67021-9
-
Ciesiolka J, Illangasekare M, Majerfeld I, Nickles T, Welch M, Yarus M, Zinnen S. 1996. Affinity selection-amplification from randomized ribooligonucleotide pools. Methods Enzymol 267: 315-335. (Pubitemid 26159231)
-
(1996)
Methods in Enzymology
, vol.267
, pp. 315-335
-
-
Ciesiolka, J.1
Illangasekare, M.2
Majerfeld, I.3
Nickles, T.4
Welch, M.5
Yarus, M.6
Zinnen, S.7
-
10
-
-
0025074907
-
In vitro selection of RNA molecules that bind specific ligands
-
Ellington AD, Szostak JW. 1990. In vitro selection of RNA molecules that bind specific ligands. Nature 346: 818-822.
-
(1990)
Nature
, vol.346
, pp. 818-822
-
-
Ellington, A.D.1
Szostak, J.W.2
-
11
-
-
0036173906
-
RNA sequence and base pairing effects on insertion editing in Trypanosoma brucei
-
DOI 10.1128/MCB.22.5.1567-1576.2002
-
Igo RP Jr, Lawson SD, Stuart K. 2002. RNA sequence and base pairing effects on insertion editing in Trypanosoma brucei. Mol Cell Biol 22: 1567-1576. (Pubitemid 34150792)
-
(2002)
Molecular and Cellular Biology
, vol.22
, Issue.5
, pp. 1567-1576
-
-
Igo Jr., R.P.1
Lawson, S.D.2
Stuart, K.3
-
12
-
-
0345005029
-
Improved predictions of secondary structures for RNA
-
Jaeger JA, Turner DH, Zuker M. 1989. Improved predictions of secondary structures for RNA. Proc Natl Acad Sci 86: 7706-7710.
-
(1989)
Proc Natl Acad Sci
, vol.86
, pp. 7706-7710
-
-
Jaeger, J.A.1
Turner, D.H.2
Zuker, M.3
-
13
-
-
0029788229
-
RNA editing: A mechanism for gRNA-specified uridylate insertion into precursor mRNA
-
Kable ML, Seiwert SD, Heidmann S, Stuart K. 1996. RNA editing: A mechanism for gRNA-specified uridylate insertion into precursor mRNA. Science 273: 1189-1195. (Pubitemid 26293201)
-
(1996)
Science
, vol.273
, Issue.5279
, pp. 1189-1195
-
-
Kable, M.L.1
Seiwert, S.D.2
Heidmann, S.3
Stuart, K.4
-
14
-
-
0032827799
-
A simple and efficient method to reduce nontemplated nucleotide addition at the 3' terminus of RNAs transcribed by T7 RNA polymerase
-
DOI 10.1017/S1355838299991033
-
Kao C, Zheng M, Rudisser S. 1999. A simple and efficient method to reduce nontemplated nucleotide addition at the 3 terminus of RNAs transcribed by T7 RNA polymerase. RNA 5: 1268-1272. (Pubitemid 29422768)
-
(1999)
RNA
, vol.5
, Issue.9
, pp. 1268-1272
-
-
Kao, C.1
Zheng, M.2
Rudisser, S.3
-
15
-
-
0024828055
-
A guide for probing native small nuclear RNA and ribonucleoprotein structures
-
DOI 10.1016/0076-6879(89)80103-X
-
Krol A, Carbon P. 1989. A guide for probing native small nuclear RNA and ribonucleoprotein structures. Methods Enzymol 180: 212-227. (Pubitemid 20039577)
-
(1989)
Methods in Enzymology
, vol.180
, pp. 212-227
-
-
Krol, A.1
Carbon, P.2
-
16
-
-
0033537675
-
Selection and characterization of an RNA decoy for transcription factor NF-κB
-
Lebruska LL, Maher LJ III. 1999. Selection and characterization of an RNA decoy for transcription factor NF-κB. Biochemistry 38: 3168-3174. (Pubitemid 129501374)
-
(1999)
Biochemistry
, vol.38
, Issue.10
, pp. 3168-3174
-
-
Lebruska, L.L.1
Maher III, L.J.2
-
17
-
-
0032476738
-
Kinetoplastid RNA-editing-associated protein 1 (REAP-1): A novel editing complex protein with repetitive domains
-
DOI 10.1093/emboj/17.21.6368
-
Madison-Antenucci S, Sabatini RS, Pollard VW, Hajduk SL. 1998. Kinetoplastid RNA-editing-associated protein 1 (Reap-1) - a novel editing complex protein with repetitive domains. EMBO J 17: 6368-6376. (Pubitemid 28497808)
-
(1998)
EMBO Journal
, vol.17
, Issue.21
, pp. 6368-6376
-
-
Madison-Antenucci, S.1
Sabatini, R.S.2
Pollard, V.W.3
Hajduk, S.L.4
-
18
-
-
0024819449
-
Synthesis of small RNAs using T7 RNA polymerase
-
Milligan JF, Uhlenbeck OC. 1989. Synthesis of small RNAs using T7 RNA polymerase. Methods Enzymol 180: 51-62.
-
(1989)
Methods Enzymol
, vol.180
, pp. 51-62
-
-
Milligan, J.F.1
Uhlenbeck, O.C.2
-
19
-
-
0026680843
-
Site-specific modification of premRNA: The 2′-hydroxyl groups at the splice sites
-
Moore MJ, Sharp PA. 1992. Site-specific modification of premRNA: The 2′-hydroxyl groups at the splice sites. Science 256: 992-997.
-
(1992)
Science
, vol.256
, pp. 992-997
-
-
Moore, M.J.1
Sharp, P.A.2
-
20
-
-
0034721817
-
Activation of guide RNA-directed editing of a cytochrome b mRNA
-
Oppegard LM, Kabb AL, Connell GJ. 2000. Activation of guide RNA-directed editing of a cytochrome b mRNA. J Biol Chem 275: 33911-33919.
-
(2000)
J Biol Chem
, vol.275
, pp. 33911-33919
-
-
Oppegard, L.M.1
Kabb, A.L.2
Connell, G.J.3
-
21
-
-
0346435100
-
Cis-acting Elements Stimulating Kinetoplastid Guide RNA-directed Editing
-
DOI 10.1074/jbc.M307997200
-
Oppegard LM, Hillestad M, McCarthy RT, Pai RD, Connell GJ. 2003. Cis-acting elements stimulating kinetoplastid guide RNA-directed editing. J Biol Chem 278: 51167-51175. (Pubitemid 38020353)
-
(2003)
Journal of Biological Chemistry
, vol.278
, Issue.51
, pp. 51167-51175
-
-
Oppegard, L.M.1
Hillestad, M.2
McCarthy, R.T.3
Pai, R.D.4
Connell, G.J.5
-
22
-
-
0037377351
-
Sequence and structural requirements for optimal guide RNA-directed insertional editing within Leishmania tarentolae
-
Pai RD, Oppegard LM, Connell GJ. 2003. Sequence and structural requirements for optimal guide RNA-directed insertional editing within Leishmania tarentolae. RNA 9: 469-483.
-
(2003)
RNA
, vol.9
, pp. 469-483
-
-
Pai, R.D.1
Oppegard, L.M.2
Connell, G.J.3
-
23
-
-
0035164020
-
Association of two novel proteins, TbMP52 and TbMP48, with the Trypanosoma brucei RNA editing complex
-
DOI 10.1128/MCB.21.2.380-389.2001
-
Panigrahi AK, Gygi SP, Ernst NL, Igo RP, Palazzo SS, Schnaufer A, Weston DS, Carmean N, Salavati R, Aebersold R, et al. 2001. Association of two novel proteins, TbMP52 and TbMP48, with the Trypanosoma brucei RNA editing complex. Mol Cell Biol 21: 380-389. (Pubitemid 32037359)
-
(2001)
Molecular and Cellular Biology
, vol.21
, Issue.2
, pp. 380-389
-
-
Panigrahi, A.K.1
Gygi, S.P.2
Ernst, N.L.3
Igo Jr., R.P.4
Palazzo, S.S.5
Schnaufer, A.6
Weston, D.S.7
Carmean, N.8
Salavati, R.9
Aebersold, R.10
Stuart, K.D.11
-
24
-
-
33646870148
-
Compositionally and functionally distinct editosomes in Trypanosoma brucei
-
DOI 10.1261/rna.45506
-
Panigrahi AK, Ernst NL, Domingo GJ, Fleck M, Salavati R, Stuart KD. 2006. Compositionally and functionally distinct editosomes in Trypanosoma brucei. RNA 12: 1038-1049. (Pubitemid 43788122)
-
(2006)
RNA
, vol.12
, Issue.6
, pp. 1038-1049
-
-
Panigrahi, A.K.1
Ernst, N.L.2
Domingo, G.J.3
Fleck, M.4
Salavati, R.5
Stuart, K.D.6
-
26
-
-
0030928201
-
Purification of a functional enzymatic editing complex from Trypanosoma brucei mitochondria
-
Rusche LN, Cruzreyes J, Piller KJ, Sollnerwebb B. 1997. Purification of a functional enzymatic editing complex from Trypanosoma brucei mitochondria. EMBO J 16: 4069-4081.
-
(1997)
EMBO J
, vol.16
, pp. 4069-4081
-
-
Rusche, L.N.1
Cruzreyes, J.2
Piller, K.J.3
Sollnerwebb, B.4
-
27
-
-
0035896357
-
An RNA ligase essential for RNA editing and survival of the bloodstream form of Trypanosoma brucei
-
DOI 10.1126/science.1058655
-
Schnaufer A, Panigrahi AK, Panicucci B, Igo RP Jr, Wirtz E, Salavati R, Stuart K. 2001. An RNA ligase essential for RNA editing and survival of the bloodstream form of Trypanosoma brucei. Science 291: 2159-2162. (Pubitemid 32224448)
-
(2001)
Science
, vol.291
, Issue.5511
, pp. 2159-2162
-
-
Schnaufer, A.1
Panigrahi, A.K.2
Panicucci, B.3
Igo Jr., R.P.4
Salavati, R.5
Stuart, K.6
-
28
-
-
0029942430
-
Direct visualization of uridylate deletion in vitro suggests a mechanism for kinetoplastid RNA editing
-
DOI 10.1016/S0092-8674(00)81062-4
-
Seiwert SD, Heidmann S, Stuart K. 1996. Direct visualization of uridylate deletion in vitro suggests a mechanism for kinetoplastid RNA editing. Cell 84: 831-841. (Pubitemid 26106853)
-
(1996)
Cell
, vol.84
, Issue.6
, pp. 831-841
-
-
Seiwert, S.D.1
Heidmann, S.2
Stuart, K.3
-
29
-
-
0035001466
-
Streptavidin aptamers: Affinity tags for the study of RNAs and ribonucleoproteins
-
DOI 10.1017/S135583820100245X
-
Srisawat C, Engelke DR. 2001. Streptavidin aptamers: Affinity tags for the study of RNAs and ribonucleoproteins. RNA 7: 632-641. (Pubitemid 32416820)
-
(2001)
RNA
, vol.7
, Issue.4
, pp. 632-641
-
-
Srisawat, C.1
Engelke, D.R.2
-
30
-
-
41849094126
-
Kinetoplastids: Related protozoan pathogens, different diseases
-
Stuart K, Brun R, Croft S, Fairlamb A, Gurtler RE, McKerrow J, Reed S, Tarleton R. 2008. Kinetoplastids: Related protozoan pathogens, different diseases. J Clin Invest 118: 1301-1310.
-
(2008)
J Clin Invest
, vol.118
, pp. 1301-1310
-
-
Stuart, K.1
Brun, R.2
Croft, S.3
Fairlamb, A.4
Gurtler, R.E.5
McKerrow, J.6
Reed, S.7
Tarleton, R.8
-
31
-
-
0025194307
-
Systemic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase
-
Tuerk C, Gold L. 1990. Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase. Science 249: 505-510. (Pubitemid 20248891)
-
(1990)
Science
, vol.249
, Issue.4968
, pp. 505-510
-
-
Tuerk, C.1
Gold, L.2
-
32
-
-
0036236872
-
A hammerhead ribozyme substrate and reporter for in vitro kinetoplastid RNA editing
-
DOI 10.1017/S135583820202962X
-
Wang B, Salavati R, Heidmann S, Stuart K. 2002. A hammerhead ribozyme substrate and reporter for in vitro kinetoplastid RNA editing. RNA 8: 548-554. (Pubitemid 34437723)
-
(2002)
RNA
, vol.8
, Issue.4
, pp. 548-554
-
-
Wang, B.1
Salavati, R.2
Heidmann, S.3
Stuart, K.4
-
33
-
-
0042121256
-
Mfold web server for nucleic acid folding and hybridization prediction
-
DOI 10.1093/nar/gkg595
-
Zuker M. 2003. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res 31: 3406-3415. (Pubitemid 37442169)
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.13
, pp. 3406-3415
-
-
Zuker, M.1
|