SCOPUS 정보 검색 플랫폼

Journal of Molecular Modeling

Volumn 16, Issue 6, 2010, Pages 1159-1168

Mechanism of CDK5 activation revealed by steered molecular dynamics simulations and energy calculations

(4) Zhang, Bing a Su, Zhou Cheng a Tay, Tong Earn a Tan, Vincent B C a

a NATIONAL UNIVERSITY OF SINGAPORE (Singapore)

Author keywords

Cyclin dependent kinase; Molecular dynamics; Protein protein interaction; Steered molecular dynamics

Indexed keywords

CYCLIN DEPENDENT KINASE 5;

ARTICLE; ENZYME ACTIVATION; ENZYME INHIBITION; ENZYME STRUCTURE; HYDROGEN BOND; MOLECULAR DYNAMICS; PRIORITY JOURNAL; PROTEIN MOTIF; SIMULATION;

ALGORITHMS; BINDING SITES; CYCLIN-DEPENDENT KINASE 5; ENERGY TRANSFER; ENZYME ACTIVATION; HUMANS; HYDROGEN BONDING; HYDROPHOBICITY; MODELS, MOLECULAR; MOLECULAR DYNAMICS SIMULATION; NERVE TISSUE PROTEINS; PROTEIN BINDING; PROTEIN STRUCTURE, SECONDARY; PROTEIN STRUCTURE, TERTIARY;

EID: 77955095256 PISSN: 16102940 EISSN: 09485023 Source Type: Journal
DOI: 10.1007/s00894-009-0629-4 Document Type: Article

Times cited : (9)

References (52)

1
- 0035413616
- Harper JW, Adams PD (2001) Chem Rev 101:2511-2526
- (2001) Chem Rev , vol.101 , pp. 2511-2526
- Harper, J.W.¹ Adams, P.D.²

2
- 0027938209
- Hunter T, Pines J (1994) Cell 79:573-582
- (1994) Cell , vol.79 , pp. 573-582
- Hunter, T.¹ Pines, J.²

3
- 0026693966
- Norbury C, Nurse P (1992) Annu Rev Biochem 61:441-470
- (1992) Annu Rev Biochem , vol.61 , pp. 441-470
- Norbury, C.¹ Nurse, P.²

4
- 0029993339
- De Azevedo WF, Mueller-Dieckmann HJ, Schulze-Gahmen U, Worland PJ, Sausville E, Kim SH (1996) Proc Natl Acad Sci USA 93:2735-2740
- (1996) Proc Natl Acad Sci USA , vol.93 , pp. 2735-2740
- De Azevedo, W.F.¹ Mueller-Dieckmann, H.J.² Schulze-Gahmen, U.³ Worland, P.J.⁴ Sausville, E.⁵ Kim, S.H.⁶

5
- 0031028163
- De Azevedo WF, Leclerc S, Meijer L, Havlicek L, Strnad M, Kim SH (1997) Eur J Biochem 243:518-526
- (1997) Eur J Biochem , vol.243 , pp. 518-526
- De Azevedo, W.F.¹ Leclerc, S.² Meijer, L.³ Havlicek, L.⁴ Strnad, M.⁵ Kim, S.H.⁶

6
- 0032998556
- Garrett MD, Fattaey A (1999) Curr Opin Genet Dev 9:104-111
- (1999) Curr Opin Genet Dev , vol.9 , pp. 104-111
- Garrett, M.D.¹ Fattaey, A.²

7
- 0031809781
- Webster KR (1998) Expert Opin Invest Drugs 7:865-887
- (1998) Expert Opin Invest Drugs , vol.7 , pp. 865-887
- Webster, K.R.¹

8
- 0035489777
- Dhavan R, Tsai LH (2001) Nat Rev Mol Cell Biol 2:749-759
- (2001) Nat Rev Mol Cell Biol , vol.2 , pp. 749-759
- Dhavan, R.¹ Tsai, L.H.²

9
- 0034913291
- Smith DS, Greer PL, Tsai LH (2001) Cell Growth Differ 12:277-283
- (2001) Cell Growth Differ , vol.12 , pp. 277-283
- Smith, D.S.¹ Greer, P.L.² Tsai, L.H.³

10
- 0034786018
- Tarricone C, Dhavan R, Peng J, Areces LB, Tsai LH (2001) Mol Cell 8:657-669
- (2001) Mol Cell , vol.8 , pp. 657-669
- Tarricone, C.¹ Dhavan, R.² Peng, J.³ Areces, L.B.⁴ Tsai, L.H.⁵

11
- 0033540078
- Bibb JA, Snyder GL, Nishi A, Yan Z, Meijer L, Fienberg AA, Tsai LH, Kwon YT, Girault JA, Czernik AJ (1999) Nature 402:669-671
- (1999) Nature , vol.402 , pp. 669-671
- Bibb, J.A.¹ Snyder, G.L.² Nishi, A.³ Yan, Z.⁴ Meijer, L.⁵ Fienberg, A.A.⁶ Tsai, L.H.⁷ Kwon, Y.T.⁸ Girault, J.A.⁹ Czernik, A.J.¹⁰

12
- 0346119136
- Nguyen MD, Julien JP (2003) Neurosignals 12:215-220
- (2003) Neurosignals , vol.12 , pp. 215-220
- Nguyen, M.D.¹ Julien, J.P.²

13
- 0348010574
- Lau LF, Ahlijanian MK (2003) Neurosignals 12:209-214
- (2003) Neurosignals , vol.12 , pp. 209-214
- Lau, L.F.¹ Ahlijanian, M.K.²

14
- 0344823864
- Smith PD, Crocker SJ, Jackson-Lewis V, Jordan-Sciutto KL, Hayley S (2003) Proc Natl Acad Sci USA 100:13650-13655
- (2003) Proc Natl Acad Sci USA , vol.100 , pp. 13650-13655
- Smith, P.D.¹ Crocker, S.J.² Jackson-Lewis, V.³ Jordan-Sciutto, K.L.⁴ Hayley, S.⁵

15
- 0036703779
- Bu B, Li J, Davies P, Vincent IJ (2002) J Neurosci 22:6515-16125
- (2002) J Neurosci , vol.22 , pp. 6515-16125
- Bu, B.¹ Li, J.² Davies, P.³ Vincent, I.J.⁴

16
- 0141542665
- Wang J, Liu S, Fu Y, Wang JH, Lu Y (2003) Nat Neurosci 6:1039-1047
- (2003) Nat Neurosci , vol.6 , pp. 1039-1047
- Wang, J.¹ Liu, S.² Fu, Y.³ Wang, J.H.⁴ Lu, Y.⁵

17
- 13444253813
- Mapelli M, Massimiliano L, Crovace C, Seeliger MA, Tsai LH, Meijer L, Musacchio A (2005) J Med Chem 48:671-679
- (2005) J Med Chem , vol.48 , pp. 671-679
- Mapelli, M.¹ Massimiliano, L.² Crovace, C.³ Seeliger, M.A.⁴ Tsai, L.H.⁵ Meijer, L.⁶ Musacchio, A.⁷

18
- 0029029617
- Jeffrey PD, Russo AA, Polyak K, Gibbs E, Hurwitz J, Massague J, Pavletich NP (1995) Nature 376:313-320
- (1995) Nature , vol.376 , pp. 313-320
- Jeffrey, P.D.¹ Russo, A.A.² Polyak, K.³ Gibbs, E.⁴ Hurwitz, J.⁵ Massague, J.⁶ Pavletich, N.P.⁷

19
- 0029767016
- Russo AA, Jeffrey PD, Pavletich NP (1996) Nat Struct Biol 3:696-700
- (1996) Nat Struct Biol , vol.3 , pp. 696-700
- Russo, A.A.¹ Jeffrey, P.D.² Pavletich, N.P.³

20
- 33646379621
- Otyepka M, Bártovaá I, Kríẑ Z, Koca J (2006) J Biol Chem 281:7271-7281
- (2006) J Biol Chem , vol.281 , pp. 7271-7281
- Otyepka, M.¹ B́rtovaá, I.² Kríẑ, Z.³ Koca, J.⁴

21
- 53349164228
- Anderson M, Andrews DM, Barker AJ, Brassington CA, Breed J, Byth KF, Culshaw JD, Finlay MR, Fisher E, Mcmiken HH, Green CP, Heaton DW, Nash IA, Newcombe NJ, Oakes SE, Pauptit RA, Roberts A, Stanway JJ, Thomas AP, Tucker JA, Walker M, Weir HM (2008) Bioorg Med Chem Lett 18:5487-5492
- (2008) Bioorg Med Chem Lett , vol.18 , pp. 5487-5492
- Anderson, M.¹ Andrews, D.M.² Barker, A.J.³ Brassington, C.A.⁴ Breed, J.⁵ Byth, K.F.⁶ Culshaw, J.D.⁷ Finlay, M.R.⁸ Fisher, E.⁹ Mcmiken, H.H.¹⁰ Green, C.P.¹¹ Heaton, D.W.¹² Nash, I.A.¹³ Newcombe, N.J.¹⁴ Oakes, S.E.¹⁵ Pauptit, R.A.¹⁶ Roberts, A.¹⁷ Stanway, J.J.¹⁸ Thomas, A.P.¹⁹ Tucker, J.A.²⁰ Walker, M.²¹ Weir, H.M.²² more..

22
- 0038245253
- Huwe A, Mazitschek R, Giannis A (2003) Angew Chem Int Ed 42:2122-2138
- (2003) Angew Chem Int Ed , vol.42 , pp. 2122-2138
- Huwe, A.¹ Mazitschek, R.² Giannis, A.³

23
- 53249149292
- Bettayeb K, Oumata N, Echalier A, Ferandin Y, Endicott JA, Galons H, Meijer L (2008) Oncogene 27:5797-5807
- (2008) Oncogene , vol.27 , pp. 5797-5807
- Bettayeb, K.¹ Oumata, N.² Echalier, A.³ Ferandin, Y.⁴ Endicott, J.A.⁵ Galons, H.⁶ Meijer, L.⁷

24
- 51849106058
- Oumata N, Bettayeb K, Ferandin Y, Demange L, Lopez-Giral A, Goddard ML,MyrianthopoulosV, Mikros E, Flajolet M, Greengard P, Meijer L, Galons H (2008) J Med Chem 51:5229-5242
- (2008) J Med Chem , vol.51 , pp. 5229-5242
- Oumata, N.¹ Bettayeb, K.² Ferandin, Y.³ Demange, L.⁴ Lopez-Giral, A.⁵ Goddard, M.L.⁶ Myrianthopoulos, V.⁷ Mikros, E.⁸ Flajolet, M.⁹ Greengard, P.¹⁰ Meijer, L.¹¹ Galons, H.¹²

25
- 33750205026
- Zhang B, Tan VBC, Lim KM, Tay TE (2006) J Comput Aided Mol Res 20:395-404
- (2006) J Comput Aided Mol Res , vol.20 , pp. 395-404
- Zhang, B.¹ Tan, V.B.C.² Lim, K.M.³ Tay, T.E.⁴

26
- 34648831244
- Zhang B, Tan VBC, Lim KM, Tay TE (2007) Biochemistry 46:10841-10851
- (2007) Biochemistry , vol.46 , pp. 10841-10851
- Zhang, B.¹ Tan, V.B.C.² Lim, K.M.³ Tay, T.E.⁴

27
- 34648853657
- Zhang B, Tan VBC, Lim KM, Tay TE, Zhuang SL (2007) J Mol Model 13:79-89
- (2007) J Mol Model , vol.13 , pp. 79-89
- Zhang, B.¹ Tan, V.B.C.² Lim, K.M.³ Tay, T.E.⁴ Zhuang, S.L.⁵

28
- 35248833733
- Zhang B, Tan VBC, Lim KM, Tay TE (2007) J Chem Info Model 47:1877-1885
- (2007) J Chem Info Model , vol.47 , pp. 1877-1885
- Zhang, B.¹ Tan, V.B.C.² Lim, K.M.³ Tay, T.E.⁴

29
- 84962374501
- Zhuang SL, Zou JW, Jiang YJ, Mao X, Zhang B, Liu HC, Yu QS (2005) J Med Chem 48:7208-7214
- (2005) J Med Chem , vol.48 , pp. 7208-7214
- Zhuang, S.L.¹ Zou, J.W.² Jiang, Y.J.³ Mao, X.⁴ Zhang, B.⁵ Liu, H.C.⁶ Yu, Q.S.⁷

30
- 24144448012
- Orzechowski M, Cieplak P (2005) J Phys: Condens Matter 17: S1627-S1640
- (2005) J Phys: Condens Matter , vol.17
- Orzechowski, M.¹ Cieplak, P.²

31
- 34249930159
- Sotomayor M, Schulten K (2007) Science 316:1144-1148
- (2007) Science , vol.316 , pp. 1144-1148
- Sotomayor, M.¹ Schulten, K.²

32
- 44649169116
- Hanasaki I, Haga T, Kawano S (2008) J Phys: Condens Matter 20:255238-255347
- (2008) J Phys: Condens Matter , vol.20 , pp. 255238-255347
- Hanasaki, I.¹ Haga, T.² Kawano, S.³

33
- 41649121704
- Walton EB, Lee S, Van Vliet KJ (2008) Biophys J 94:2621-2630
- (2008) Biophys J , vol.94 , pp. 2621-2630
- Walton, E.B.¹ Lee, S.² Van Vliet, K.J.³

34
- 34248513174
- Zuo ZL, Chen G, Zou HJ, Mok PC, Zhu WL, Chen KX, Jiang HL (2007) Comput Bio Chem 31:186-195
- (2007) Comput Bio Chem , vol.31 , pp. 186-195
- Zuo, Z.L.¹ Chen, G.² Zou, H.J.³ Mok, P.C.⁴ Zhu, W.L.⁵ Chen, K.X.⁶ Jiang, H.L.⁷

35
- 0030059225
- Grubmüller H, Heymann B, Tavan P (1996) Science 271:997-999
- (1996) Science , vol.271 , pp. 997-999
- Grubmüller, H.¹ Heymann, B.² Tavan, P.³

36
- 0030834853
- Isralewitz B, Izrailev S, Schulten K (1997) Biophys J 73:2972-2979
- (1997) Biophys J , vol.73 , pp. 2972-2979
- Isralewitz, B.¹ Izrailev, S.² Schulten, K.³

37
- 0030987036
- Izrailev S, Stepaniants S, Balsera M, Oono Y, Schulten K (1997) Biophys J 72:1568-1581
- (1997) Biophys J , vol.72 , pp. 1568-1581
- Izrailev, S.¹ Stepaniants, S.² Balsera, M.³ Oono, Y.⁴ Schulten, K.⁵

38
- 0031848099
- Lu H, Isralewitz B, Krammer A, Vogel V, Schulten K (1998) Biophys J 75:662-671
- (1998) Biophys J , vol.75 , pp. 662-671
- Lu, H.¹ Isralewitz, B.² Krammer, A.³ Vogel, V.⁴ Schulten, K.⁵

39
- 0033136019
- Wriggers W, Schulten K (1999) Proteins-Struct Funct Gene 35:262-273
- (1999) Proteins-Struct Funct Gene , vol.35 , pp. 262-273
- Wriggers, W.¹ Schulten, K.²

40
- 34247186195
- University of California, San Francisco
- Case DA, Pearlman DA, Caldwell JW, Cheatham TE III, Wang J, Ross WS, Simmerling CL, Darden TA, Merz KM, Stanton RV, Cheng AL, Vincent JJ, Crowley M, Tsui V, Gohlke H, Radme RJ, Duan Y, Pitera J, Massova I, Seibel GL, Singh UC, Weiner PK, Kollman PA (2007) AMBER 9. University of California, San Francisco
- (2007) AMBER 9
- Case, D.A.¹ Pearlman, D.A.² Caldwell, J.W.³ Cheatham III, T.E.⁴ Wang, J.⁵ Ross, W.S.⁶ Simmerling, C.L.⁷ Darden, T.A.⁸ Merz, K.M.⁹ Stanton, R.V.¹⁰ Cheng, A.L.¹¹ Vincent, J.J.¹² Crowley, M.¹³ Tsui, V.¹⁴ Gohlke, H.¹⁵ Radme, R.J.¹⁶ Duan, Y.¹⁷ Pitera, J.¹⁸ Massova, I.¹⁹ Seibel, G.L.²⁰ more..

41
- 0029011701
- Cornell WD, Cieplak P, Bayly CI, Gould IR, Merz KM, Ferguson DM Jr, Spellmeyer DC, Fox T, Caldwell JW, Kollman PA (1995) J Am Chem Soc 117:5179-5197
- (1995) J Am Chem Soc , vol.117 , pp. 5179-5197
- Cornell, W.D.¹ Cieplak, P.² Bayly, C.I.³ Gould, I.R.⁴ Merz, K.M.⁵ Ferguson Jr., D.M.⁶ Spellmeyer, D.C.⁷ Fox, T.⁸ Caldwell, J.W.⁹ Kollman, P.A.¹⁰

42
- 0004016501
- Jorgensen WL, Chandrasekhar J, Madura JD, Impey RW, Klein ML (1983) J Chem Phys 79:926-935
- (1983) J Chem Phys , vol.79 , pp. 926-935
- Jorgensen, W.L.¹ Chandrasekhar, J.² Madura, J.D.³ Impey, R.W.⁴ Klein, M.L.⁵

43
- 33846823909
- Darden T, York D, Pedersen L (1993) J Chem Phys 98:10089-10092
- (1993) J Chem Phys , vol.98 , pp. 10089-10092
- Darden, T.¹ York, D.² Pedersen, L.³

44
- 33646940952
- Ryckaert JP, Ciccotti G, Berendsen HJC (1997) J Comput Phys 23:327-341
- (1997) J Comput Phys , vol.23 , pp. 327-341
- Ryckaert, J.P.¹ Ciccotti, G.² Berendsen, H.J.C.³

45
- 0034084991
- Massova I, Kollman PA (2000) Perspect Drug Discov 18:113-135
- (2000) Perspect Drug Discov , vol.18 , pp. 113-135
- Massova, I.¹ Kollman, P.A.²

46
- 0013412734
- Heymann B, Grubmüller H (1999) Chem Phys Lett 303:1-9
- (1999) Chem Phys Lett , vol.303 , pp. 1-9
- Heymann, B.¹ Grubmüller, H.²

47
- 0034874258
- Heymann B, Grubmüller H (2001) Biophys J 81:1295-1313
- (2001) Biophys J , vol.81 , pp. 1295-1313
- Heymann, B.¹ Grubmüller, H.²

48
- 0033445338
- Lu H, Schulten K (1999) Chem Phys 247:141-153
- (1999) Chem Phys , vol.247 , pp. 141-153
- Lu, H.¹ Schulten, K.²

49
- 0037076420
- Jensen Mø, Park S, Tajkhorshid E, Schulten K (2002) Proc Natl Acad Sci USA 99:6731-6736
- (2002) Proc Natl Acad Sci USA , vol.99 , pp. 6731-6736
- Jensen, M.Ø.¹ Park, S.² Tajkhorshid, E.³ Schulten, K.⁴

50
- 4143087050
- Park S, Schulten K (2004) J Chem Phys 120:5946-5961
- (2004) J Chem Phys , vol.120 , pp. 5946-5961
- Park, S.¹ Schulten, K.²

51
- 0031880829
- Marrink SJ, Berger O, Tieleman P, Jáhnig F (1998) Biophys J 74:931-943
- (1998) Biophys J , vol.74 , pp. 931-943
- Marrink, S.J.¹ Berger, O.² Tieleman, P.³ Jáhnig, F.⁴

52
- 0043245780
- Gohlke H, Kiel C, Case DA (2003) J Mol Biol 330:891-913
- (2003) J Mol Biol , vol.330 , pp. 891-913
- Gohlke, H.¹ Kiel, C.² Case, D.A.³

* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.