-
1
-
-
67650889108
-
Directed mammalian gene regulatory networks using expression and comparative genomic hybridization microarray data from radiation hybrids
-
doi: 10.1371/journal.pcbi.1000407
-
Ahn S, Wang RT, Park CC, Lin A, Leahy RM, Lange K, Smith DJ. 2009. Directed mammalian gene regulatory networks using expression and comparative genomic hybridization microarray data from radiation hybrids. PLoS Comput Biol 5: e1000407. doi: 10.1371/journal.pcbi.1000407.
-
(2009)
PLoS Comput Biol
, vol.5
-
-
Ahn, S.1
Wang, R.T.2
Park, C.C.3
Lin, A.4
Leahy, R.M.5
Lange, K.6
Smith, D.J.7
-
2
-
-
0036013593
-
Statistical mechanics of complex networks
-
Albert R, Barabasi AL. 2002. Statistical mechanics of complex networks. Rev Mod Phys 74: 47-97.
-
(2002)
Rev Mod Phys
, vol.74
, pp. 47-97
-
-
Albert, R.1
Barabasi, A.L.2
-
3
-
-
0034069495
-
Gene Ontology: Tool for the unification of biology
-
The Gene Ontology Consortium
-
Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, Cherry JM, Davis AP, Dolinski K, Dwight SS, Eppig JT, et al. 2000. Gene Ontology: Tool for the unification of biology. The Gene Ontology Consortium. Nat Genet 25: 25-29.
-
(2000)
Nat Genet
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
Cherry, J.M.6
Davis, A.P.7
Dolinski, K.8
Dwight, S.S.9
Eppig, J.T.10
-
4
-
-
0036780698
-
A genomewide screen for autism-spectrum disorders: Evidence for a major susceptibility locus on chromosome 3q25-27
-
Auranen M, Vanhala R, Varilo T, Ayers K, Kempas E, Ylisaukko-Oja T, Sinsheimer JS, Peltonen L, Jarvela I. 2002. A genomewide screen for autism-spectrum disorders: Evidence for a major susceptibility locus on chromosome 3q25-27. Am J Hum Genet 71: 777-790. (Pubitemid 135750511)
-
(2002)
American Journal of Human Genetics
, vol.71
, Issue.4
, pp. 777-790
-
-
Auranen, M.1
Vanhala, R.2
Varilo, T.3
Ayers, K.4
Kempas, E.5
Ylisaukko-oja, T.6
Sinsheimer, J.S.7
Peltonen, L.8
Jarvela, I.9
-
5
-
-
0034785444
-
A radiation hybrid transcript map of the mouse genome
-
Avner P, Bruls T, Poras I, Eley L, Gas S, Ruiz P, Wiles MV, Sousa-Nunes R, Kettleborough R, Rana A, et al. 2001. A radiation hybrid transcript map of the mouse genome. Nat Genet 29: 194-200.
-
(2001)
Nat Genet
, vol.29
, pp. 194-200
-
-
Avner, P.1
Bruls, T.2
Poras, I.3
Eley, L.4
Gas, S.5
Ruiz, P.6
Wiles, M.V.7
Sousa-Nunes, R.8
Kettleborough, R.9
Rana, A.10
-
6
-
-
0038483826
-
Emergence of scaling in random networks
-
Barabasi AL, Albert R. 1999. Emergence of scaling in random networks. Science 286: 509-512.
-
(1999)
Science
, vol.286
, pp. 509-512
-
-
Barabasi, A.L.1
Albert, R.2
-
7
-
-
33745969837
-
Members of RTP and REEP gene families influence functional bitter taste receptor expression
-
DOI 10.1074/jbc.M513637200
-
Behrens M, Bartelt J, Reichling C, Winnig M, Kuhn C, Meyerhof W. 2006. Members of RTP and REEP gene families influence functional bitter taste receptor expression. J Biol Chem 281: 20650-20659. (Pubitemid 44065836)
-
(2006)
Journal of Biological Chemistry
, vol.281
, Issue.29
, pp. 20650-20659
-
-
Behrens, M.1
Bartelt, J.2
Reichling, C.3
Winnig, M.4
Kuhn, C.5
Meyerhof, W.6
-
8
-
-
0001677717
-
Controlling the false discovery rate: A practical and powerful approach to multiple testing
-
Benjamini Y, Hochberg Y. 1995. Controlling the false discovery rate: A practical and powerful approach to multiple testing. J R Stat Soc Ser B Methodol 57: 289-300.
-
(1995)
J R Stat Soc Ser B Methodol
, vol.57
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
-
10
-
-
67649663886
-
Yeast two-hybrid, a powerful tool for systems biology
-
Bruckner A, Polge C, Lentze N, Auerbach D, Schlattner U. 2009. Yeast two-hybrid, a powerful tool for systems biology. Int J Mol Sci 10: 2763-2788.
-
(2009)
Int J Mol Sci
, vol.10
, pp. 2763-2788
-
-
Bruckner, A.1
Polge, C.2
Lentze, N.3
Auerbach, D.4
Schlattner, U.5
-
11
-
-
75649111192
-
The genetic landscape of a cell
-
Costanzo M, Baryshnikova A, Bellay J, Kim Y, Spear ED, Sevier CS, Ding H, Koh JL, Toufighi K, Mostafavi S, et al. 2010. The genetic landscape of a cell. Science 327: 425-431.
-
(2010)
Science
, vol.327
, pp. 425-431
-
-
Costanzo, M.1
Baryshnikova, A.2
Bellay, J.3
Kim, Y.4
Spear, E.D.5
Sevier, C.S.6
Ding, H.7
Koh, J.L.8
Toufighi, K.9
Mostafavi, S.10
-
12
-
-
26244440771
-
Gene essentiality and the topology of protein interaction networks
-
DOI 10.1098/rspb.2005.3128
-
Coulomb S, Bauer M, Bernard D, Marsolier-Kergoat MC. 2005. Gene essentiality and the topology of protein interaction networks. Proc Biol Sci 272: 1721-1725. (Pubitemid 41414681)
-
(2005)
Proceedings of the Royal Society B: Biological Sciences
, vol.272
, Issue.1573
, pp. 1721-1725
-
-
Coulomb, S.1
Bauer, M.2
Bernard, D.3
Marsolier-Kergoat, M.-C.4
-
14
-
-
0036580169
-
Protein interactions: Two methods for assessment of the reliability of high throughput observations
-
Deane CM, Salwinski L, Xenarios I, Eisenberg D. 2002. Protein interactions: Two methods for assessment of the reliability of high throughput observations. Mol Cell Proteomics 1: 349-356.
-
(2002)
Mol Cell Proteomics
, vol.1
, pp. 349-356
-
-
Deane, C.M.1
Salwinski, L.2
Xenarios, I.3
Eisenberg, D.4
-
15
-
-
33744972290
-
A Gene-Centered C. elegans Protein-DNA Interaction Network
-
DOI 10.1016/j.cell.2006.04.038, PII S0092867406006246
-
Deplancke B, Mukhopadhyay A, Ao W, Elewa AM, Grove CA, Martinez NJ, Sequerra R, Doucette-Stamm L, Reece-Hoyes JS, Hope IA, et al. 2006. A gene-centered C. elegans protein-DNA interaction network. Cell 125: 1193-1205. (Pubitemid 43866204)
-
(2006)
Cell
, vol.125
, Issue.6
, pp. 1193-1205
-
-
Deplancke, B.1
Mukhopadhyay, A.2
Ao, W.3
Elewa, A.M.4
Grove, C.A.5
Martinez, N.J.6
Sequerra, R.7
Doucette-Stamm, L.8
Reece-Hoyes, J.S.9
Hope, I.A.10
Tissenbaum, H.A.11
Mango, S.E.12
Walhout, A.J.M.13
-
16
-
-
84865730611
-
A set of measures of centrality based on betweenness
-
Freeman LC. 1977. A set of measures of centrality based on betweenness. Sociometry 40: 35-41.
-
(1977)
Sociometry
, vol.40
, pp. 35-41
-
-
Freeman, L.C.1
-
17
-
-
33644617753
-
Analysis of the human protein interactome and comparison with yeast, worm and fly interaction data sets
-
Gandhi TK, Zhong J, Mathivanan S, Karthick L, Chandrika KN, Mohan SS, Sharma S, Pinkert S, Nagaraju S, Periaswamy B, et al. 2006. Analysis of the human protein interactome and comparison with yeast, worm and fly interaction data sets. Nat Genet 38: 285-293.
-
(2006)
Nat Genet
, vol.38
, pp. 285-293
-
-
Gandhi, T.K.1
Zhong, J.2
Mathivanan, S.3
Karthick, L.4
Chandrika, K.N.5
Mohan, S.S.6
Sharma, S.7
Pinkert, S.8
Nagaraju, S.9
Periaswamy, B.10
-
18
-
-
33644555054
-
Proteome survey reveals modularity of the yeast cell machinery
-
Gavin AC, Aloy P, Grandi P, Krause R, Boesche M, Marzioch M, Rau C, Jensen LJ, Bastuck S, Dumpelfeld B, et al. 2006. Proteome survey reveals modularity of the yeast cell machinery. Nature 440: 631-636.
-
(2006)
Nature
, vol.440
, pp. 631-636
-
-
Gavin, A.C.1
Aloy, P.2
Grandi, P.3
Krause, R.4
Boesche, M.5
Marzioch, M.6
Rau, C.7
Jensen, L.J.8
Bastuck, S.9
Dumpelfeld, B.10
-
19
-
-
0345600247
-
A protein interaction map of Drosophila melanogaster
-
Giot L, Bader JS, Brouwer C, Chaudhuri A, Kuang B, Li Y, Hao YL, Ooi CE, Godwin B, Vitols E, et al. 2003. A protein interaction map of Drosophila melanogaster. Science 302: 1727-1736.
-
(2003)
Science
, vol.302
, pp. 1727-1736
-
-
Giot, L.1
Bader, J.S.2
Brouwer, C.3
Chaudhuri, A.4
Kuang, B.5
Li, Y.6
Hao, Y.L.7
Ooi, C.E.8
Godwin, B.9
Vitols, E.10
-
20
-
-
0016862453
-
New method for mapping genes in human chromosomes
-
Goss SJ, Harris H. 1975. New method for mapping genes in human chromosomes. Nature 255: 680-684.
-
(1975)
Nature
, vol.255
, pp. 680-684
-
-
Goss, S.J.1
Harris, H.2
-
21
-
-
9044240048
-
A radiation hybrid map of the human genome
-
Gyapay G, Schmitt K, Fizames C, Jones H, Vega-Czarny N, Spillett D, Muselet D, Prud'homme JF, Dib C, Auffray C, et al. 1996. A radiation hybrid map of the human genome. Hum Mol Genet 5: 339-346.
-
(1996)
Hum Mol Genet
, vol.5
, pp. 339-346
-
-
Gyapay, G.1
Schmitt, K.2
Fizames, C.3
Jones, H.4
Vega-Czarny, N.5
Spillett, D.6
Muselet, D.7
Prud'homme, J.F.8
Dib, C.9
Auffray, C.10
-
22
-
-
16344381521
-
Comparative genomics of centrality and essentiality in three eukaryotic protein-interaction networks
-
Hahn MW, Kern AD. 2005. Comparative genomics of centrality and essentiality in three eukaryotic protein-interaction networks. Mol Biol Evol 22: 803-806.
-
(2005)
Mol Biol Evol
, vol.22
, pp. 803-806
-
-
Hahn, M.W.1
Kern, A.D.2
-
23
-
-
38349174166
-
A new 4016-marker radiation hybrid map for porcine-human genome analysis
-
Hamasima N, Mikawa A, Suzuki H, Suzuki K, Uenishi H, Awata T. 2008. A new 4016-marker radiation hybrid map for porcine-human genome analysis. Mamm Genome 19: 51-60.
-
(2008)
Mamm Genome
, vol.19
, pp. 51-60
-
-
Hamasima, N.1
Mikawa, A.2
Suzuki, H.3
Suzuki, K.4
Uenishi, H.5
Awata, T.6
-
24
-
-
0035998736
-
Online Mendelian Inheritance in Man (OMIM), a knowledgebase of human genes and genetic disorders
-
Hamosh A, Scott AF, Amberger J, Bocchini C, Valle D, McKusick VA. 2002. Online Mendelian Inheritance in Man (OMIM), a knowledgebase of human genes and genetic disorders. Nucleic Acids Res 30: 52-55.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 52-55
-
-
Hamosh, A.1
Scott, A.F.2
Amberger, J.3
Bocchini, C.4
Valle, D.5
McKusick, V.A.6
-
25
-
-
22944487608
-
Facilitating genome navigation: Survey sequencing and dense radiation-hybrid gene mapping
-
Hitte C, Madeoy J, Kirkness EF, Priat C, Lorentzen TD, Senger F, Thomas D, Derrien T, Ramirez C, Scott C, et al. 2005. Facilitating genome navigation: Survey sequencing and dense radiation-hybrid gene mapping. Nat Rev Genet 6: 643-648.
-
(2005)
Nat Rev Genet
, vol.6
, pp. 643-648
-
-
Hitte, C.1
Madeoy, J.2
Kirkness, E.F.3
Priat, C.4
Lorentzen, T.D.5
Senger, F.6
Thomas, D.7
Derrien, T.8
Ramirez, C.9
Scott, C.10
-
26
-
-
77951115122
-
International network of cancer genome projects
-
The International Cancer Genome Consortium
-
The International Cancer Genome Consortium. 2010. International network of cancer genome projects. Nature 464: 993-998.
-
(2010)
Nature
, vol.464
, pp. 993-998
-
-
-
27
-
-
0036691946
-
Roles for the two-hybrid system in exploration of the yeast protein interactome
-
Ito T, Ota K, Kubota H, Yamaguchi Y, Chiba T, Sakuraba K, Yoshida M. 2002. Roles for the two-hybrid system in exploration of the yeast protein interactome. Mol Cell Proteomics 1: 561-566.
-
(2002)
Mol Cell Proteomics
, vol.1
, pp. 561-566
-
-
Ito, T.1
Ota, K.2
Kubota, H.3
Yamaguchi, Y.4
Chiba, T.5
Sakuraba, K.6
Yoshida, M.7
-
28
-
-
15244342824
-
A comprehensive radiation hybrid map of the bovine genome comprising 5593 loci
-
Itoh T, Watanabe T, Ihara N, Mariani P, Beattie CW, Sugimoto Y, Takasuga A. 2005. A comprehensive radiation hybrid map of the bovine genome comprising 5593 loci. Genomics 85: 413-424.
-
(2005)
Genomics
, vol.85
, pp. 413-424
-
-
Itoh, T.1
Watanabe, T.2
Ihara, N.3
Mariani, P.4
Beattie, C.W.5
Sugimoto, Y.6
Takasuga, A.7
-
29
-
-
0034609791
-
The large-scale organization of metabolic networks
-
Jeong H, Tombor B, Albert R, Oltvai ZN, Barabasi AL. 2000. The large-scale organization of metabolic networks. Nature 407: 651-654.
-
(2000)
Nature
, vol.407
, pp. 651-654
-
-
Jeong, H.1
Tombor, B.2
Albert, R.3
Oltvai, Z.N.4
Barabasi, A.L.5
-
31
-
-
27744469130
-
High-betweenness proteins in the yeast protein interaction network
-
Joy MP, Brock A, Ingber DE, Huang S. 2005. High-betweenness proteins in the yeast protein interaction network. J Biomed Biotechnol 2005: 96-103.
-
(2005)
J Biomed Biotechnol
, vol.2005
, pp. 96-103
-
-
Joy, M.P.1
Brock, A.2
Ingber, D.E.3
Huang, S.4
-
32
-
-
34147145963
-
Mutations in autism susceptibility candidate 2 (AUTS2) in patients with mental retardation
-
Kalscheuer VM, FitzPatrick D, Tommerup N, Bugge M, Niebuhr E, Neumann LM, Tzschach A, Shoichet SA, Menzel C, Erdogan F, et al. 2007. Mutations in autism susceptibility candidate 2 (AUTS2) in patients with mental retardation. Hum Genet 121: 501-509.
-
(2007)
Hum Genet
, vol.121
, pp. 501-509
-
-
Kalscheuer, V.M.1
FitzPatrick, D.2
Tommerup, N.3
Bugge, M.4
Niebuhr, E.5
Neumann, L.M.6
Tzschach, A.7
Shoichet, S.A.8
Menzel, C.9
Erdogan, F.10
-
33
-
-
0033982936
-
KEGG: Kyoto Encyclopedia of Genes and Genomes
-
Kanehisa M, Goto S. 2000. KEGG: Kyoto encyclopedia of genes and genomes. Nucleic Acids Res 28: 27-30. (Pubitemid 30047706)
-
(2000)
Nucleic Acids Research
, vol.28
, Issue.1
, pp. 27-30
-
-
Kanehisa, M.1
Goto, S.2
-
34
-
-
33644874819
-
From genomics to chemical genomics: New developments in KEGG
-
Kanehisa M, Goto S, Hattori M, Aoki-Kinoshita KF, Itoh M, Kawashima S, Katayama T, Araki M, Hirakawa M. 2006. From genomics to chemical genomics: New developments in KEGG. Nucleic Acids Res 34: D354-D357.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Kanehisa, M.1
Goto, S.2
Hattori, M.3
Aoki-Kinoshita, K.F.4
Itoh, M.5
Kawashima, S.6
Katayama, T.7
Araki, M.8
Hirakawa, M.9
-
35
-
-
38549126643
-
KEGG for linking genomes to life and the environment
-
DOI 10.1093/nar/gkm882
-
Kanehisa M, Araki M, Goto S, Hattori M, Hirakawa M, Itoh M, Katayama T, Kawashima S, Okuda S, Tokimatsu T, et al. 2008. KEGG for linking genomes to life and the environment. Nucleic Acids Res 36: D480-D484. (Pubitemid 351149770)
-
(2008)
Nucleic Acids Research
, vol.36
, Issue.SUPPL. 1
-
-
Kanehisa, M.1
Araki, M.2
Goto, S.3
Hattori, M.4
Hirakawa, M.5
Itoh, M.6
Katayama, T.7
Kawashima, S.8
Okuda, S.9
Tokimatsu, T.10
Yamanishi, Y.11
-
36
-
-
27744432926
-
Revisiting "scale-free" networks
-
Keller EF. 2005. Revisiting "scale-free" networks. Bioessays 27: 1060-1068.
-
(2005)
Bioessays
, vol.27
, pp. 1060-1068
-
-
Keller, E.F.1
-
37
-
-
22844450110
-
Systematic interpretation of genetic interactions using protein networks
-
DOI 10.1038/nbt1096
-
Kelley R, Ideker T. 2005. Systematic interpretation of genetic interactions using protein networks. Nat Biotechnol 23: 561-566. (Pubitemid 41724894)
-
(2005)
Nature Biotechnology
, vol.23
, Issue.5
, pp. 561-566
-
-
Kelley, R.1
Ideker, T.2
-
38
-
-
36749016685
-
Genome-scale RNAi profiling of cell division in human tissue culture cells
-
DOI 10.1038/ncb1659, PII NCB1659
-
Kittler R, Pelletier L, Heninger AK, Slabicki M, Theis M, Miroslaw L, Poser I, Lawo S, Grabner H, Kozak K, et al. 2007. Genome-scale RNAi profiling of cell division in human tissue culture cells. Nat Cell Biol 9: 1401-1412. (Pubitemid 350201753)
-
(2007)
Nature Cell Biology
, vol.9
, Issue.12
, pp. 1401-1412
-
-
Kittler, R.1
Pelletier, L.2
Heninger, A.-K.3
Slabicki, M.4
Theis, M.5
Miroslaw, L.6
Poser, I.7
Lawo, S.8
Grabner, H.9
Kozak, K.10
Wagner, J.11
Surendranath, V.12
Richter, C.13
Bowen, W.14
Jackson, A.L.15
Habermann, B.16
Hyman, A.A.17
Buchholz, F.18
-
39
-
-
33745253118
-
A common nonsense mutation in EphB2 is associated with prostate cancer risk in African American men with a positive family history
-
Kittles RA, Baffoe-Bonnie AB, Moses TY, Robbins CM, Ahaghotu C, Huusko P, Pettaway C, Vijayakumar S, Bennett J, Hoke G, et al. 2006. A common nonsense mutation in EphB2 is associated with prostate cancer risk in African American men with a positive family history. J Med Genet 43:507-511.
-
(2006)
J Med Genet
, vol.43
, pp. 507-511
-
-
Kittles, R.A.1
Baffoe-Bonnie, A.B.2
Moses, T.Y.3
Robbins, C.M.4
Ahaghotu, C.5
Huusko, P.6
Pettaway, C.7
Vijayakumar, S.8
Bennett, J.9
Hoke, G.10
-
40
-
-
1842667858
-
High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence
-
DOI 10.1101/gr.1968704
-
Kwitek AE, Gullings-Handley J, Yu J, Carlos DC, Orlebeke K, Nie J, Eckert J, Lemke A, Andrae JW, Bromberg S, et al. 2004. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Genome Res 14: 750-757. (Pubitemid 38500249)
-
(2004)
Genome Research
, vol.14
, Issue.4
, pp. 750-757
-
-
Kwitek, A.E.1
Gullings-Handley, J.2
Yu, J.3
Carlos, D.C.4
Orlebeke, K.5
Nie, J.6
Eckert, J.7
Lemke, A.8
Andrae, J.W.9
Bromberg, S.10
Pasko, D.11
Chen, D.12
Scheetz, T.E.13
Casavant, T.L.14
Soares, M.B.15
Sheffield, V.C.16
Tonellato, P.J.17
Jacob, H.J.18
-
41
-
-
9444239213
-
A probabilistic functional network of yeast genes
-
DOI 10.1126/science.1099511
-
Lee I, Date SV, Adai AT, Marcotte EM. 2004. A probabilistic functional network of yeast genes. Science 306: 1555-1558. (Pubitemid 39564951)
-
(2004)
Science
, vol.306
, Issue.5701
, pp. 1555-1558
-
-
Lee, I.1
Date, S.V.2
Adai, A.T.3
Marcotte, E.M.4
-
42
-
-
38649138295
-
A single gene network accurately predicts phenotypic effects of gene perturbation in Caenorhabditis elegans
-
DOI 10.1038/ng.2007.70, PII NG200770
-
Lee I, Lehner B, Crombie C, Wong W, Fraser AG, Marcotte EM. 2008. A single gene network accurately predicts phenotypic effects of gene perturbation in Caenorhabditis elegans. Nat Genet 40: 181-188. (Pubitemid 351171397)
-
(2008)
Nature Genetics
, vol.40
, Issue.2
, pp. 181-188
-
-
Lee, I.1
Lehner, B.2
Crombie, C.3
Wong, W.4
Fraser, A.G.5
Marcotte, E.M.6
-
43
-
-
33746525415
-
Systematic mapping of genetic interactions in Caenorhabditis elegans identifies common modifiers of diverse signaling pathways
-
DOI 10.1038/ng1844, PII NG1844
-
Lehner B, Crombie C, Tischler J, Fortunato A, Fraser AG. 2006. Systematic mapping of genetic interactions in Caenorhabditis elegans identifies common modifiers of diverse signaling pathways. Nat Genet 38: 896-903. (Pubitemid 44141657)
-
(2006)
Nature Genetics
, vol.38
, Issue.8
, pp. 896-903
-
-
Lehner, B.1
Crombie, C.2
Tischler, J.3
Fortunato, A.4
Fraser, A.G.5
-
44
-
-
9144264169
-
A map of the interactome network of the metazoan C. elegans
-
Li S, Armstrong CM, Bertin N, Ge H, Milstein S, Boxem M, Vidalain PO, Han JD, Chesneau A, Hao T, et al. 2004. A map of the interactome network of the metazoan C. elegans. Science 303: 540-543.
-
(2004)
Science
, vol.303
, pp. 540-543
-
-
Li, S.1
Armstrong, C.M.2
Bertin, N.3
Ge, H.4
Milstein, S.5
Boxem, M.6
Vidalain, P.O.7
Han, J.D.8
Chesneau, A.9
Hao, T.10
-
45
-
-
17744408207
-
A first-generation whole genome-radiation hybrid map spanning the mouse genome
-
McCarthy LC, Terrett J, Davis ME, Knights CJ, Smith AL, Critcher R, Schmitt K, Hudson J, Spurr NK, Goodfellow PN. 1997. A first-generation whole genome-radiation hybrid map spanning the mouse genome. Genome Res 7: 1153-1161.
-
(1997)
Genome Res
, vol.7
, pp. 1153-1161
-
-
McCarthy, L.C.1
Terrett, J.2
Davis, M.E.3
Knights, C.J.4
Smith, A.L.5
Critcher, R.6
Schmitt, K.7
Hudson, J.8
Spurr, N.K.9
Goodfellow, P.N.10
-
46
-
-
0035567551
-
A radiation hybrid mapping panel for the rhesus macaque
-
Murphy WJ, Page JE, Smith C Jr., Desrosiers RC, O'Brien SJ. 2001. A radiation hybrid mapping panel for the rhesus macaque. J Hered 92: 516-519. (Pubitemid 34411344)
-
(2001)
Journal of Heredity
, vol.92
, Issue.6
, pp. 516-519
-
-
Murphy, W.J.1
Page, J.E.2
Smith Jr., C.3
Desrosiers, R.C.4
O'Brien, S.J.5
-
47
-
-
0035895559
-
A high-resolution radiation hybrid map of the human genome draft sequence
-
Olivier M, Aggarwal A, Allen J, Almendras AA, Bajorek ES, Beasley EM, Brady SD, Bushard JM, Bustos VI, Chu A, et al. 2001. A high-resolution radiation hybrid map of the human genome draft sequence. Science 291: 1298-1302.
-
(2001)
Science
, vol.291
, pp. 1298-1302
-
-
Olivier, M.1
Aggarwal, A.2
Allen, J.3
Almendras, A.A.4
Bajorek, E.S.5
Beasley, E.M.6
Brady, S.D.7
Bushard, J.M.8
Bustos, V.I.9
Chu, A.10
-
48
-
-
41349103693
-
Fine mapping of regulatory loci for mammalian gene expression using radiation hybrids
-
DOI 10.1038/ng.113, PII NG113
-
Park CC, Ahn S, Bloom JS, Lin A, Wang RT, Wu T, Sekar A, Khan AH, Farr CJ, Lusis AJ, et al. 2008. Fine mapping of regulatory loci for mammalian gene expression using radiation hybrids. Nat Genet 40: 421-429. (Pubitemid 351450882)
-
(2008)
Nature Genetics
, vol.40
, Issue.4
, pp. 421-429
-
-
Park, C.C.1
Ahn, S.2
Bloom, J.S.3
Lin, A.4
Wang, R.T.5
Wu, T.6
Sekar, A.7
Khan, A.H.8
Farr, C.J.9
Lusis, A.J.10
Leahy, R.M.11
Lange, K.12
Smith, D.J.13
-
49
-
-
42049117185
-
A simple method for combining genetic mapping data from multiple crosses and experimental designs
-
doi: 10.1371/journal.pone.0001036
-
Peirce JL, Broman KW, Lu L, Williams RW. 2007. A simple method for combining genetic mapping data from multiple crosses and experimental designs. PLoS One 2: e1036. doi: 10.1371/journal.pone.0001036.
-
(2007)
PLoS One
, vol.2
-
-
Peirce, J.L.1
Broman, K.W.2
Lu, L.3
Williams, R.W.4
-
50
-
-
10744224197
-
Development of human protein reference database as an initial platform for approaching systems biology in humans
-
Peri S, Navarro JD, Amanchy R, Kristiansen TZ, Jonnalagadda CK, Surendranath V, Niranjan V, Muthusamy B, Gandhi TK, Gronborg M, et al. 2003. Development of human protein reference database as an initial platform for approaching systems biology in humans. Genome Res 13: 2363-2371.
-
(2003)
Genome Res
, vol.13
, pp. 2363-2371
-
-
Peri, S.1
Navarro, J.D.2
Amanchy, R.3
Kristiansen, T.Z.4
Jonnalagadda, C.K.5
Surendranath, V.6
Niranjan, V.7
Muthusamy, B.8
Gandhi, T.K.9
Gronborg, M.10
-
51
-
-
55449129519
-
Evidence of a large-scale functional organization of mammalian chromosomes
-
doi: 10.1371/journal.pgen.0010033
-
Petkov PM, Graber JH, Churchill GA, DiPetrillo K, King BL, Paigen K. 2005. Evidence of a large-scale functional organization of mammalian chromosomes. PLoS Genet 1: e33. doi: 10.1371/journal.pgen.0010033.
-
(2005)
PLoS Genet
, vol.1
-
-
Petkov, P.M.1
Graber, J.H.2
Churchill, G.A.3
DiPetrillo, K.4
King, B.L.5
Paigen, K.6
-
52
-
-
54249144448
-
A 4103 marker integrated physical and comparative map of the horse genome
-
Raudsepp T, Gustafson-Seabury A, Durkin K, Wagner ML, Goh G, Seabury CM, Brinkmeyer-Langford C, Lee EJ, Agarwala R, Stallknecht-Rice E, et al. 2008. A 4103 marker integrated physical and comparative map of the horse genome. Cytogenet Genome Res 122: 28-36.
-
(2008)
Cytogenet Genome Res
, vol.122
, pp. 28-36
-
-
Raudsepp, T.1
Gustafson-Seabury, A.2
Durkin, K.3
Wagner, M.L.4
Goh, G.5
Seabury, C.M.6
Brinkmeyer-Langford, C.7
Lee, E.J.8
Agarwala, R.9
Stallknecht-Rice, E.10
-
53
-
-
54249107599
-
Conservation and rewiring of functional modules revealed by an epistasis map in fission yeast
-
Roguev A, Bandyopadhyay S, Zofall M, Zhang K, Fischer T, Collins SR, Qu H, Shales M, Park HO, Hayles J, et al. 2008. Conservation and rewiring of functional modules revealed by an epistasis map in fission yeast. Science 322: 405-410.
-
(2008)
Science
, vol.322
, pp. 405-410
-
-
Roguev, A.1
Bandyopadhyay, S.2
Zofall, M.3
Zhang, K.4
Fischer, T.5
Collins, S.R.6
Qu, H.7
Shales, M.8
Park, H.O.9
Hayles, J.10
-
54
-
-
27144530248
-
Towards a proteome-scale map of the human protein-protein interaction network
-
Rual JF, Venkatesan K, Hao T, Hirozane-Kishikawa T, Dricot A, Li N, Berriz GF, Gibbons FD, Dreze M, Ayivi-Guedehoussou N, et al. 2005. Towards a proteome-scale map of the human protein-protein interaction network. Nature 437: 1173-1178.
-
(2005)
Nature
, vol.437
, pp. 1173-1178
-
-
Rual, J.F.1
Venkatesan, K.2
Hao, T.3
Hirozane-Kishikawa, T.4
Dricot, A.5
Li, N.6
Berriz, G.F.7
Gibbons, F.D.8
Dreze, M.9
Ayivi-Guedehoussou, N.10
-
55
-
-
8844270180
-
RTP family members induce functional expression of mammalian odorant receptors
-
DOI 10.1016/j.cell.2004.11.021, PII S009286740401089X
-
Saito H, Kubota M, Roberts RW, Chi Q, Matsunami H. 2004. RTP family members induce functional expression of mammalian odorant receptors. Cell 119: 679-691. (Pubitemid 39535755)
-
(2004)
Cell
, vol.119
, Issue.5
, pp. 679-691
-
-
Saito, H.1
Kubota, M.2
Roberts, R.W.3
Chi, Q.4
Matsunami, H.5
-
56
-
-
58149218155
-
Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network
-
Simonis N, Rual JF, Carvunis AR, Tasan M, Lemmens I, Hirozane-Kishikawa T, Hao T, Sahalie JM, Venkatesan K, Gebreab F, et al. 2009. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Nat Methods 6: 47-54.
-
(2009)
Nat Methods
, vol.6
, pp. 47-54
-
-
Simonis, N.1
Rual, J.F.2
Carvunis, A.R.3
Tasan, M.4
Lemmens, I.5
Hirozane-Kishikawa, T.6
Hao, T.7
Sahalie, J.M.8
Venkatesan, K.9
Gebreab, F.10
-
57
-
-
0029975669
-
Prostaglandin endoperoxide Hsynthases-1 and -2
-
Smith WL, Dewitt DL. 1996. Prostaglandin endoperoxide Hsynthases-1 and -2. Adv Immunol 62: 167-215.
-
(1996)
Adv Immunol
, vol.62
, pp. 167-215
-
-
Smith, W.L.1
Dewitt, D.L.2
-
58
-
-
15144342084
-
An STS-based radiation hybrid map of the human genome
-
Stewart EA, McKusick KB, Aggarwal A, Bajorek E, Brady S, Chu A, Fang N, Hadley D, Harris M, Hussain S, et al. 1997. An STS-based radiation hybrid map of the human genome. Genome Res 7: 422-433.
-
(1997)
Genome Res
, vol.7
, pp. 422-433
-
-
Stewart, E.A.1
McKusick, K.B.2
Aggarwal, A.3
Bajorek, E.4
Brady, S.5
Chu, A.6
Fang, N.7
Hadley, D.8
Harris, M.9
Hussain, S.10
-
59
-
-
41349102391
-
Evolutionary plasticity of genetic interaction networks
-
Tischler J, Lehner B, Fraser AG. 2008. Evolutionary plasticity of genetic interaction networks. Nat Genet 40: 390-391.
-
(2008)
Nat Genet
, vol.40
, pp. 390-391
-
-
Tischler, J.1
Lehner, B.2
Fraser, A.G.3
-
60
-
-
0035861532
-
Systematic genetic analysis with ordered arrays of yeast deletion mutants
-
DOI 10.1126/science.1065810
-
Tong AH, Evangelista M, Parsons AB, Xu H, Bader GD, Page N, Robinson M, Raghibizadeh S, Hogue CW, Bussey H, et al. 2001. Systematic genetic analysis with ordered arrays of yeast deletion mutants. Science 294: 2364-2368. (Pubitemid 33140562)
-
(2001)
Science
, vol.294
, Issue.5550
, pp. 2364-2368
-
-
Tong, A.H.Y.1
Evangelista, M.2
Parsons, A.B.3
Xu, H.4
Bader, G.D.5
Page, N.6
Robinson, M.7
Raghibizadeh, S.8
Hogue, C.W.V.9
Bussey, H.10
Andrews, B.11
Tyers, M.12
Boone, C.13
-
61
-
-
10744230485
-
Global mapping of the yeast genetic interaction network
-
Tong AH, Lesage G, Bader GD, Ding H, Xu H, Xin X, Young J, Berriz GF, Brost RL, Chang M, et al. 2004. Global mapping of the yeast genetic interaction network. Science 303: 808-813.
-
(2004)
Science
, vol.303
, pp. 808-813
-
-
Tong, A.H.1
Lesage, G.2
Bader, G.D.3
Ding, H.4
Xu, H.5
Xin, X.6
Young, J.7
Berriz, G.F.8
Brost, R.L.9
Chang, M.10
-
62
-
-
0037713729
-
Mutations in the fumarate hydratase gene cause hereditary leiomyomatosis and renal cell cancer in families in North America
-
Toro JR, Nickerson ML, Wei MH, Warren MB, Glenn GM, Turner ML, Stewart L, Duray P, Tourre O, Sharma N, et al. 2003. Mutations in the fumarate hydratase gene cause hereditary leiomyomatosis and renal cell cancer in families in North America. Am J Hum Genet 73: 95-106.
-
(2003)
Am J Hum Genet
, vol.73
, pp. 95-106
-
-
Toro, J.R.1
Nickerson, M.L.2
Wei, M.H.3
Warren, M.B.4
Glenn, G.M.5
Turner, M.L.6
Stewart, L.7
Duray, P.8
Tourre, O.9
Sharma, N.10
-
63
-
-
58149305794
-
An empirical framework for binary interactome mapping
-
Venkatesan K, Rual JF, Vazquez A, Stelzl U, Lemmens I, Hirozane-Kishikawa T, Hao T, Zenkner M, Xin X, Goh KI, et al. 2009. An empirical framework for binary interactome mapping. Nat Methods 6: 83-90.
-
(2009)
Nat Methods
, vol.6
, pp. 83-90
-
-
Venkatesan, K.1
Rual, J.F.2
Vazquez, A.3
Stelzl, U.4
Lemmens, I.5
Hirozane-Kishikawa, T.6
Hao, T.7
Zenkner, M.8
Xin, X.9
Goh, K.I.10
-
64
-
-
70249088327
-
Genomic views of distant-acting enhancers
-
Visel A, Rubin EM, Pennacchio LA. 2009. Genomic views of distant-acting enhancers. Nature 461: 199-205.
-
(2009)
Nature
, vol.461
, pp. 199-205
-
-
Visel, A.1
Rubin, E.M.2
Pennacchio, L.A.3
-
65
-
-
0032931687
-
A radiation hybrid map of the rat genome containing 5255 markers
-
Watanabe TK, Bihoreau MT, McCarthy LC, Kiguwa SL, Hishigaki H, Tsuji A, Browne J, Yamasaki Y, Mizoguchi-Miyakita A, Oga K, et al. 1999. A radiation hybrid map of the rat genome containing 5255 markers. Nat Genet 22: 27-36.
-
(1999)
Nat Genet
, vol.22
, pp. 27-36
-
-
Watanabe, T.K.1
Bihoreau, M.T.2
McCarthy, L.C.3
Kiguwa, S.L.4
Hishigaki, H.5
Tsuji, A.6
Browne, J.7
Yamasaki, Y.8
Mizoguchi-Miyakita, A.9
Oga, K.10
-
66
-
-
0032482432
-
Collective dynamics of "small-world" networks
-
Watts DJ, Strogatz SH. 1998. Collective dynamics of "small- world" networks. Nature 393: 440-442.
-
(1998)
Nature
, vol.393
, pp. 440-442
-
-
Watts, D.J.1
Strogatz, S.H.2
-
67
-
-
2442477788
-
Genomic analysis of essentiality within protein networks
-
DOI 10.1016/j.tig.2004.04.008, PII S0168952504001015
-
Yu H, Greenbaum D, Xin Lu H, Zhu X, Gerstein M. 2004. Genomic analysis of essentiality within protein networks. Trends Genet 20: 227-231. (Pubitemid 38625679)
-
(2004)
Trends in Genetics
, vol.20
, Issue.6
, pp. 227-231
-
-
Yu, H.1
Greenbaum, D.2
Lu, H.X.3
Zhu, X.4
Gerstein, M.5
-
68
-
-
34247622363
-
The importance of bottlenecks in protein networks: Correlation with gene essentiality and expression dynamics
-
doi: 10.1371/journal.pcbi.0030059
-
Yu H, Kim PM, Sprecher E, Trifonov V, Gerstein M. 2007. The importance of bottlenecks in protein networks: Correlation with gene essentiality and expression dynamics. PLoS Comput Biol 3: e59. doi: 10.1371/journal.pcbi.0030059.
-
(2007)
PLoS Comput Biol
, vol.3
-
-
Yu, H.1
Kim, P.M.2
Sprecher, E.3
Trifonov, V.4
Gerstein, M.5
-
69
-
-
53349117774
-
High-quality binary protein interaction map of the yeast interactome network
-
Yu H, Braun P, Yildirim MA, Lemmens I, Venkatesan K, Sahalie J, Hirozane-Kishikawa T, Gebreab F, Li N, Simonis N, et al. 2008. High-quality binary protein interaction map of the yeast interactome network. Science 322: 104-110
-
(2008)
Science
, vol.322
, pp. 104-110
-
-
Yu, H.1
Braun, P.2
Yildirim, M.A.3
Lemmens, I.4
Venkatesan, K.5
Sahalie, J.6
Hirozane-Kishikawa, T.7
Gebreab, F.8
Li, N.9
Simonis, N.10
|