A radiation hybrid map of the rat genome containing 5,255 markers

Nature Genetics

Volumn 22, Issue 1, 1999, Pages 27-36

  Watanabe, Takeshi K ^a   Bihoreau, Marie Therese ^b   McCarthy, Linda C ^c,f   Kiguwa, Susanna L ^c   Hishigaki, Haretsugu ^a   Tsuji, Atsushi ^a   Browne, Julie ^b   Yamasaki, Yuki ^a   Mizoguchi Miyakita, Ayako ^a   Oga, Keiko ^a   Ono, Toshihide ^a   Okuno, Shiro ^a   Kanemoto, Naohide ^a   Takahashi, Ei Ichi ^a   Tomita, Kazuhiro ^a   Hayashi, Hiromi ^a   Adachi, Masakazu ^a   Webber, Caleb ^b   Davis, Marie ^c   Kiel, Susanne ^b   Knights, Catherine ^c   Smith, Angela ^c   Critcher, Ricky ^c   Miller, Jonathan ^b   Thangarajah, Thiru ^b   Day, Philip J R ^b   Hudson Jr , James R ^d   Irie, Yasuo ^a   Takagi, Toshihisa ^e   Nakamura, Yusuke ^e   Goodfellow, Peter N ^c   Lathrop, G Mark ^b   Tanigami, Akira ^a   James, Michael R ^b   more..

^a OTSUKA PHARMACEUTICAL CO LTD   (Japan)

^b UNIVERSITY OF OXFORD   (United Kingdom)

^c UNIVERSITY OF CAMBRIDGE   (United Kingdom)

^d Research Genetics   (United States)

^e THE UNIVERSITY OF TOKYO   (Japan)

^f GLAXOSMITHKLINE   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL CELL; ARTICLE; CHROMOSOME ANALYSIS; GENE LOCATION; GENE MAPPING; GENETIC ANALYSIS; GENETIC MARKER; GENOME; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; RAT;

EID: 0032931687     PISSN: 10614036     EISSN: None     Source Type: Journal    
DOI: 10.1038/8737     Document Type: Article

References (44)

1. Rapp, J.P., Wang, S.M. & Dene, H.A. A genetic polymorphism in the renin gene of Dahl rats consegregates with blood pressure. Science 243, 542-544 (1989).
2. Hilbert, P. et al. Chromosomal mapping of two genetic loci associated with blood-pressure regulation in hereditary hypertensive rats. Nature 353, 521-529 (1991).
3. Jacob, H.J. et al. Genetic mapping of a major gene causing hypertension in the stroke-prone spontaneously hypertensive rat. Cell 67, 213-224 (1991).
4. Bottger, A. et al. Quantitative trait loci influencing cholesterol and phosholipid phenotypes map to chromosomes that contain genes regulating blood pressure in the spontaneously hypertensive rat. J. Clin. Invest. 98, 856-862 (1996).
5. Galli, J. et al. Genetic analysis of non-insulin dependent diabetes mellitus in the GK rat. Nature Genet. 12, 31-37 (1996).
6. Gauguier, D. et al. Chromosomal mapping of genetic loci associated with non-insulin dependent diabetes in the GK rat. Nature Genet. 12, 38-43 (1996).
7. Brown, D.M., Provoost, A.P., Daly, M.J., Lander, E.S. & Jacob, H.J. Renal disease susceptibility and hypertension are under independent genetic control in the fawn-hooded rat. Nature Genet. 12, 44-51 (1996).
8. Jacob, H.J. et al. Genetic dissection of autoimmune type 1 diabetes in the BB rat. Nature Genet. 2, 56-60 (1992).
9. Kermarrec, N. et al. Serum IgE concentration and other immune manifestations of treatment with gold salts are linked to the MHC and IL4 regions in the rat. Genomics 31, 111-114 (1996).
10. Remmers, E.F. et al. A genome scan localizes five non-MHC loci controlling collagen-induced arthritis in rats. Nature Genet. 14, 82-85 (1996).
11. Moisan, M.-P. et al. A major quantitative trait locus influences hyperactivity in the rat. Nature Genet. 14, 471-473 (1996).
12. James, M.R. & Lindpaintner, K. Why map the rat? Trends Genet. 13, 171-173 (1997).
13. Jacob, H.J. et al. A genetic linkage map of the laboratory rat, Rattus norvegicus. Nature Genet. 9, 63-69 (1995).
14. Bihoreau, M.-T. et al. A linkage map of the rat genome derived from three F2 crosses. Genome Res. 7, 434-440 (1997).
15. Brown, D.M. et al. An integrated genetic linkage map of the laboratory rat. Mamm. Genome 9, 521-530 (1998).
16. Cai, L. et al. Construction and characterization of a 10-genome equivalent yeast artificial chromosome library for the laboratory rat. Genomics 39, 385-392 (1997).
17. Woon, P.Y. et al. Construction and characterization of a 10-fold genome equivalent rat P1-derived artificial chromosome library. Genomics 50, 306-316 (1998).
18. Kanemoto, N. et al. Genetic dissection of "OLETF", a rat model for non-insulin-dependent diabetes mellitus. Mamm. Genome 9, 419-425 (1998).
19. Nadeau, J.H. & Taylor, B.A. Lengths of chromosomal segments conserved since divergence of man and mouse. Proc. Natl Acad. Sci. USA 81, 814-818 (1984).
20. Nadeau, J.H. & Sankoff, D. The lengths of undiscovered conserved segments in comparative maps. Mamm. Genome 9, 491-495 (1998).
21. Ohno, S. Sex Chromosomes and Sex Linked Genes (Springer-Verlag, Berlin/Heidelberg, 1967).
22. Millwood, I.Y. et al. A gene-based genetic linkage and comparative map of the rat X chromosome. Genomics 40, 253-261 (1997).
23. Yamada, J., Kuramoto, T. & Serikawa, T. A rat genetic linkage map and comparative maps for mouse or human homologous rat genes. Mamm. Genome 5, 63-83 (1994).
24. Dietrich, W.F. et al. A comprehensive genetic map of the mouse genome. Nature 380, 149-152 (1996).
25. Dib, C. et al. A comprehensive genetic map of the human genome based on 5,264 microsatellites. Nature 380, 152-154 (1996).
26. Levan, G. et al. The gene map of the Norway rat (Rattus norvegicus) and comparative mapping with mouse and man. Genomics 10, 699-718 (1991).
27. Kondo, Y. et al. DNA segments mapped by reciprocal use of microsatellite primers between mouse and rat. Mamm. Genome 4, 571-576 (1993).
28. Scalzi, J.M. & Hozier, J.C. Comparative genome mapping: mouse and rat homologies revealed by fluorescence in situ hybridization. Genomics 47, 44-51 (1998).
29. Nabika, T. et al. Comparative mapping of novel simple sequence repeat markers in a hypertension-related region on rat chromosome 1. Mamm. Genome 8, 215-217 (1997).
30. James, M.R. et al. A radiation hybrid map of 506 STS markers spanning human chromosome 11. Nature Genet. 8, 70-76 (1994).
31. Schuler, G.D. et al. A gene map of the human genome. Science 274, 540-546 (1996).
32. Stewart, E.A. et al. An STS-based radiation hybrid map of the human genome. Genome Res. 7, 422-433 (1997).
33. Gyapay, G. et al. A radiation hybrid map of the human genome. Hum. Mol. Genet. 5, 339-346 (1996).
34. McCarthy, L.C. et al. A first-generation whole genome-radiation hybrid map spanning the mouse genome. Genome Res. 7, 1153-1161 (1997).
35. Yang, Y.P. & Womack, J.E. Parallel radiation hybrid mapping: a powerful tool for high-resolution genomic comparison. Genome Res. 8, 731-736 (1998).
36. Catzellis, F.M., Dicerman, A.W., Michaux, J. & Kirsh, J.A.W. DNA hybridization and rodent phylogeny. in Mammal Phytogeny (eds Szalay, F.S., Novacek, M.J. & Mckiennu, M.C.) 159-172 (Springer Verlag, New York, 1993).
37. Collins, D.W. & Jukes, T.H. Rates of transition and transversion in coding sequences since the human-rodent divergence. Genomics 20, 386-396 (1994).
38. Andersson, L et al. Comparative genome organization: first international workshop. Mamm. Genome 7, 717-734 (1996).
39. Carver, E.A. & Stubbs, L. Zooming in on the human-mouse comparative map: genome conservation re-examined on a high-resolution scale. Genome Res. 7, 1123-1137 (1997).
40. Graves, J.A.M. Mammals that break the rules: genetics of marsupials and monotremes. Annu. Rev. Genet. 30, 233-260 (1996).
41. Westerveld, A., Visser, R., Meerta Khan, P. & Bootsma, D. Loss of human genetic markers in man-Chinese hamster somatic cell hybrids. Nature New Biol. 234, 20-24 (1971).
42. Don, R.H., Cox, P.T., Wainwright, B.J., Baker, K. & Mattick, J.S. Touchdown PCR to circumvent spurious priming during gene amplification. Nucleic Acids Res. 19, 4008 (1991).
43. Day, I.N.M., Humphries, S.E., Richards, S., Norton, D. & Reid, M. High-throughput genotyping using horizontal polyacrylamide gels with wells arranged for microplate array diagonal gel electrophoresis (MADGE). BioTechniques 19, 830-834 (1995).
44. Matise, T.C., Perlin, M. & Chakravarti, A. Automated construction of genetic linkage maps using an expert system (MultiMap): a human genome linkage map. Nature Genet. 6, 384-390 (1994).