An STS-based radiation hybrid map of the human genome

Genome Research

Volumn 7, Issue 5, 1997, Pages 422-433

  Stewart, Elizabeth A ^a   McKusick, Kathleen B ^a   Aggarwal, Amita ^a   Bajorek, Ewa ^a   Brady, Shannon ^a   Chu, Angela ^a   Fang, Nicole ^a   Hadley, David ^a   Harris, Mark ^a   Hussain, Sami ^a,b   Lee, Richard ^a   Maratukulam, Annu ^a   O'Connor, Kyle ^a,c   Perkins, Shanti ^a   Piercy, Mark ^a   Qin, Fawn ^a   Reif, Tim ^a   Sanders, Carla ^a   She, Xiaohong ^a   Sun, Wei Lin ^a   Tabar, Poroshat ^a   Voyticky, Susan ^a   Cowles, Sid ^a,d   Fan, Jian Bing ^a,b   Mader, Chris ^a   Quackenbush, John ^a   Myers, Richard M ^a   Cox, David R ^a   more..

^a STANFORD UNIVERSITY SCHOOL OF MEDICINE   (United States)

^b Thermo Fisher Scientific   (United States)

^c MILLENNIUM PHARMACEUTICALS INC   (United States)

^d Drug Metabolism Pharmacokinetics Clinical Pharmacology   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA; DNA;

ANIMAL CELL; ARTICLE; DNA SEQUENCE; GENE MAPPING; GENETIC MARKER; GENOME; HUMAN; HUMAN CELL; HUMAN GENETICS; MALE; NONHUMAN; PRIORITY JOURNAL; SEQUENCE TAGGED SITE; YEAST ARTIFICIAL CHROMOSOME;

EID: 15144342084     PISSN: 10889051     EISSN: None     Source Type: Journal    
DOI: 10.1101/gr.7.5.422     Document Type: Article

References (33)

1. Adams, M.D., J.M. Kelley, J.D. Gocayne, M. Dubnick, M.H. Polymeropoulos, H. Xiao, C.R. Merril, A. Wu, B. Olde, R.F. Moreno et al. 1991. Complementary DNA sequencing: Expressed sequence tags and human genome project. Science 252: 1651-1656.
2. Benham, F., K. Hart, J. Crolla, M. Bobrow, M. Francavilla, and P.N. Goodfellow. 1989. A method for generating hybrids containing nonselected fragments of human chromosomes. Genomics 4: 509-517.
3. Boehnke, M., K. Lange, and D.R. Cox. 1991. Statistical methods for multipoint radiation hybrid mapping. Am. J. Hum. Genet. 49: 1174-1188.
4. Chumakov, I., P. Rigault, S. Guillou, P. Ougen, A. Billaut, G. Guasconi, P. Gervy, I. LeGall, P. Solarue, L. Grinas et al. 1992. Continuum of overlapping clones spanning the entire human chromosome 21q. Nature 359: 380-387.
5. Chumakov, I.M., P. Rigault, I. Le Gall, C. Bellanne-Chantelot, A. Billault, S. Guillou, P. Soularue, G. Guasconi, E. Poullier, I. Gros et al. 1995. A YAC contig map of the human genome. Nature (Suppl.) 377: 175-297.
6. Cox, D.R., M. Burmeister, E.R. Price, S. Kim, and R.M. Myers. 1990. Radiation hybrid mapping: A somatic cell genetic method for constructing high-resolution maps of mammalian chromosomes. Science 250: 245-250.
7. Cox, D.R., E.D. Green, E.S. Lander, D. Cohen, and R.M. Myers. 1994. Assessing mapping progress in the human genome project. Science 265: 2031-2032.
8. Dib, C., S. Faure, C. Fizames, D. Samson, N. Drouot, A. Vignal, P. Millasseau, S. Marc, J. Hazan, E. Seboun et al. 1996. A comprehensive genetic map of the human genome based on 5,264 microsatellites. Nature 380: 152-154.
9. Doggett, N.A., L.A. Goodwin, J.G. Tesmer, L.J. Meincke, D.C. Bruce, L.M. Clark, M.R. Altherr, A.A. Ford, H.C. Chi, B.L. Marrone et al. 1995. An integrated physical map of human chromosome 16. Nature 377: 335-365.
10. Drury, H.A., K.W. Clark, R.E. Hermes, J.M. Feser, L.J. Thomas, Jr., and H. Donis-Keller. 1992. A graphical user interface for quantitative imaging and analysis of electrophoretic gels and autoradiograms. BíoTechníques 12: 892-898, 900-891.
11. Drwinga, H.L., L.H. Toji, C.H. Kim, A.E. Greene, and R.A. Mulivor. 1993. NIGMS human/rodent somatic cell hybrid mapping panels 1 and 2. Genomics 16: 311-314.
12. Dubois, B.L. and S.L. Naylor. 1993. Characterization of NIGMS human/rodent somatic hybrid mapping panel 2 by PCR. Genomics 16: 315-319.
13. Gemmill, R.M., I. Chumakov, P. Scott, B. Waggoner, P. Rigault, J. Cypser, Q. Chen, J. Weissenbach, K. Gardiner, H. Wang et al. 1995. A second-generation YAC contig map of human chromosome 3. Nature 377: 299-319.
14. Goold, R.D., G.L. diSibio, H. Xu, D.B. Lang, J. Dadgar, G.G. Magrane, A. Dugaiczyk, K.A. Smith, D.R. Cox, S.B. Masters et al, 1993. The development of sequence-tagged sites for human chromosome 4. Hum. Mol. Genet. 2: 1271-1288.
15. Goss, S.J. and H. Harris. 1975. New method for mapping genes in human chromosomes. Nature 255: 680-684.
16. Green, E.D. and M.V. Olson. 1990. Chromosomal region of the cystic fibrosis gene in yeast artificial chromosomes: A model for human genome mapping. Science 250: 94-98.
17. Gyapay, G., S.K., C. Fizames, H. Jones, N. Vega-Czarny, D. Spillett, D. Muselet, J.F. Prud'homme, C. Dib, C. Auffray et al. 1996. A radation hybrid map of the human genome. Hum. Mol. Genet. 5: 339-346.
18. Heslop-Harrison, J.S., A.R. Leitch, T. Schwarzacher, J.B. Smith, M.D. Atkinson, and M.D. Bennett. 1989. The volumes and morphology of human chromosomes in mitotic reconstructions. Hum. Genet. 84: 27-34.
19. Hudson, T.J., L.D. Stein, S.S. Gerety, J. Ma, A.B. Castle, J. Silva, D.K. Slonim, R. Baptista, L. Kruglyak, S.H. Xu et al. 1995. An STS-based map of the human genome. Science 270: 1945-1954.
20. James, M.R., C.W. Richard III, J.-J. Schott, C. Yousry, K. Clark, J. Bell, J.D. Terwilliger, J. Hazan, C. Dubay, A. Vignal et al. 1994. A radiation hybrid map of 506 STS markers spanning human chromosome 11. Nature Genet. 8: 70-76.
21. Lange, K., M. Boehnke, D.R. Cox, and K.L. Lunetta. 1995. Statistical methods for polyploid radiation hybrid mapping. Genome Res. 5: 136-150.
22. Litt, M., P. Kramer, E. Kort, P. Fain, S. Cox, D. Root, R. White, J. Weissenbach, H. Doris-Keller, R.Gatti et al. 1995. The CEPH consortium linkage map of human chromosome 11. Genomics 27: 101-112.
23. Lunetta, K.L. and M. Boehnke. 1994. Multipoint radiation hybrid mapping: Comparison of methods, sample size requirements, and optimal study characteristics. Genomics 21: 92-103.
24. Lunetta, K.L., M. Boehnke, K. Lange, and D.R. Cox. 1995. Experimental design and error detection for polyploid radiation hybrid mapping. Genome Res. 5: 151-163.
25. _. 1996. Selected locus and multiple panel models for radiation hybrid mapping. Am. J. Hum. Genet. 59: 717-725.
26. Matise, T.C., C. Kashuk, C.R. Richard III, A. Chakravarti, and M.R. James 1996. Radiation hybrids: Panels, distances, density, and multimap. Am. J. Hum. Genet. 59: A308.
27. Murray, J.C., K.H. Buetow, J.L. Weber, S. Ludwigsen, T. Scherpbier-Heddema, F. Manion, J. Quillen, V.C. Sheffield, S. Sunden, G.M. Duyk et al. 1994. A comprehensive human linkage map with centimorgan density. Cooperative Human Linkage Center (CHLC). Science 265: 2049-2054.
28. Olson, M., L. Hood, C. Cantor, and D. Botstein. 1989. A common language for physical mapping of the human genome. Science 245: 1434-1435.
29. Raeymaekers, P., K. Van Zand, L. Jun, M. Hoglund, J.J. Cassiman, H. Van den Berghe, and P. Marynen. 1995. A radiation hybrid map with 60 loci covering the entire short arm of chromosome 12. Genomics 29: 170-178.
30. Schuler, G.D., M.S. Boguski, E.A. Stewart, L.D. Stein, G. Gyapay, K. Rice, R.E. White, P. Rodriguez-Tome, A. Aggarwal, E. Bajorek et al. 1996. A gene map of the human genome. Science 274: 540-546.
31. Shaw, S.H., J.E. Farr, B.A. Thiel, T.C. Matise, J. Weissenbach, A. Chakaravarti, and C.W. Richard III. 1995. A radiation hybrid map of 95 STSs spanning human chromosome 13q. Genomics 27: 502-510.
32. Waiter, M.A., D.J. Spillett, P. Thomas, J. Weissenbach, and P.N. Goodfellow. 1994. A method for constructing radiation hybrid maps of whole genomes. Nature Genet. 7: 22-28.
33. Westerveld, A., R.P.L.S. Visser, P.M. Khan, and D. Bootsma. 1971. Loss of human genetic markers in man-Chinese hamster ovary cells. Nature Genet. 7: 22-28.