-
3
-
-
12244313650
-
Change in criticality of synchronous Hopf bifurcation in a multiple-delayed neural system
-
Ncube I, Campbell SA, Wu J (2003) Change in criticality of synchronous Hopf bifurcation in a multiple-delayed neural system. Fields Institute Communications 36: 179-193.
-
(2003)
Fields Institute Communications
, vol.36
, pp. 179-193
-
-
Ncube, I.1
Campbell, S.A.2
Wu, J.3
-
4
-
-
1842426549
-
Bifurcations in a white-blood-cell production model
-
Bernard S, Bélair J, Mackey M (2004) Bifurcations in a white-blood-cell production model. CR Biol 327: 201-210.
-
(2004)
CR Biol
, vol.327
, pp. 201-210
-
-
Bernard, S.1
Bélair, J.2
MacKey, M.3
-
5
-
-
1842583602
-
Modeling operon dynamics: The tryptophan and lactose operons as paradigms
-
Mackey M, Santillan M, Yildirim N (2004) Modeling operon dynamics: the tryptophan and lactose operons as paradigms. CR Biol 327: 211-224.
-
(2004)
CR Biol
, vol.327
, pp. 211-224
-
-
Mackey, M.1
Santillan, M.2
Yildirim, N.3
-
6
-
-
0346688719
-
Why is the lysogenic state of phage-l is so stable: A mathematical modelling approach
-
Mackey M, Santillan M (2004) Why is the lysogenic state of phage-l is so stable: A mathematical modelling approach. Biophys J 86: 75-84.
-
(2004)
Biophys J
, vol.86
, pp. 75-84
-
-
Mackey, M.1
Santillan, M.2
-
7
-
-
0012907951
-
Time delay as a key to apoptosis in the p53 network
-
Tiana G, Jensen M, Sneppen K (2002) Time delay as a key to apoptosis in the p53 network. Eur Phys J B 29: 135-140.
-
(2002)
Eur Phys J B
, vol.29
, pp. 135-140
-
-
Tiana, G.1
Jensen, M.2
Sneppen, K.3
-
8
-
-
0037464494
-
Sustained oscillations and time delays in gene expression of protein Hes1
-
Jensen M, Sneppen K, Tiana G (2003) Sustained oscillations and time delays in gene expression of protein Hes1. FEBS Lett 541: 176-177.
-
(2003)
FEBS Lett
, vol.541
, pp. 176-177
-
-
Jensen, M.1
Sneppen, K.2
Tiana, G.3
-
9
-
-
0043180477
-
Oscillatory expression of Hes1, p53, and NF-kB driven by transcriptional time delays
-
Monk N (2003) Oscillatory expression of Hes1, p53, and NF-kB driven by transcriptional time delays. Curr Biol 13: 1409-1413.
-
(2003)
Curr Biol
, vol.13
, pp. 1409-1413
-
-
Monk, N.1
-
10
-
-
0017714604
-
Oscillations and chaos in physiological controlsystems
-
Mackey M, Glass L (1977) Oscillations and chaos in physiological controlsystems. Science 197: 287-289.
-
(1977)
Science
, vol.197
, pp. 287-289
-
-
Mackey, M.1
Glass, L.2
-
11
-
-
0037174669
-
Oscillatory expression of the bHLH factor Hes1 regulated by a negative feedback loop
-
Hirata H, Yoshiura S, Ohtsuka T, Bessho Y, Harada T, et al. (2002) Oscillatory expression of the bHLH factor Hes1 regulated by a negative feedback loop. Science 298: 840-843.
-
(2002)
Science
, vol.298
, pp. 840-843
-
-
Hirata, H.1
Yoshiura, S.2
Ohtsuka, T.3
Bessho, Y.4
Harada, T.5
-
12
-
-
0142027814
-
Structure and function of the feed-forward loop network motif
-
Mangan S, Alon U (2003) Structure and function of the feed-forward loop network motif. Proc Natl Acad Sci USA 100: 11980-11985.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 11980-11985
-
-
Mangan, S.1
Alon, U.2
-
13
-
-
0242364231
-
The coherent feedforward loop serves as a sign-sensitive delay element in transcription networks
-
Mangan S, Zaslaver A, Alon U (2003) The coherent feedforward loop serves as a sign-sensitive delay element in transcription networks. J Mol Biol 334: 197-204.
-
(2003)
J Mol Biol
, vol.334
, pp. 197-204
-
-
Mangan, S.1
Zaslaver, A.2
Alon, U.3
-
14
-
-
32044462728
-
The incoherent feed-forward loop accelerates the response-time of the gal system of Escherichia coli
-
Mangan S, Itzkovitz A, Zaslaver A, Alon U (2006) The incoherent feed-forward loop accelerates the response-time of the gal system of Escherichia coli. J Mol Biol 356: 1073-1081.
-
(2006)
J Mol Biol
, vol.356
, pp. 1073-1081
-
-
Mangan, S.1
Itzkovitz, A.2
Zaslaver, A.3
Alon, U.4
-
15
-
-
0034688174
-
Construction of a genetic toggle switch in Escherichia coli
-
Gardner T, Cantor C, Collins J (2000) Construction of a genetic toggle switch in Escherichia coli. Nature 403: 339-342.
-
(2000)
Nature
, vol.403
, pp. 339-342
-
-
Gardner, T.1
Cantor, C.2
Collins, J.3
-
16
-
-
0034688173
-
A synthetic oscillatory network of transcriptional regulators
-
Elowitz M, Leibler S (2000) A synthetic oscillatory network of transcriptional regulators. Nature 403: 335-338.
-
(2000)
Nature
, vol.403
, pp. 335-338
-
-
Elowitz, M.1
Leibler, S.2
-
17
-
-
0014285225
-
An electron microscopic study of large bacterial polyribosomes
-
Slayter H, Kiho Y, Hall C, Rich A (1968) An electron microscopic study of large bacterial polyribosomes. J Cell Biol 37: 583-590.
-
(1968)
J Cell Biol
, vol.37
, pp. 583-590
-
-
Slayter, H.1
Kiho, Y.2
Hall, C.3
Rich, A.4
-
18
-
-
0037388094
-
Genome-wide analysis of mRNA translation profiles in Saccharomyces cerevisiae
-
Arava Y, Wang Y, Storey J, Liu C, Brown PO, et al. (2005) Genome-wide analysis of mRNA translation profiles in Saccharomyces cerevisiae. Proc Natl Acad Sci USA 100: 3889-3894.
-
(2005)
Proc Natl Acad Sci USA
, vol.100
, pp. 3889-3894
-
-
Arava, Y.1
Wang, Y.2
Storey, J.3
Liu, C.4
Brown, P.O.5
-
19
-
-
17844395239
-
Dissecting eukaryotic translation and its control by ribosome density mapping
-
Arava Y, Boas F, Brown P, Herschlag D (2005) Dissecting eukaryotic translation and its control by ribosome density mapping. Nucleic Acids Res 33: 2421-2432.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 2421-2432
-
-
Arava, Y.1
Boas, F.2
Brown, P.3
Herschlag, D.4
-
20
-
-
0034968287
-
A mathematical model for prokaryotic protein synthesis
-
Drew D (2001) A mathematical model for prokaryotic protein synthesis. B Math Biol 63: 329-351.
-
(2001)
B Math Biol
, vol.63
, pp. 329-351
-
-
Drew, D.1
-
21
-
-
0014245158
-
Kinetics of biopolymerization on nucleic acid templates
-
MacDonald C, Gibbs J, Pipkin A (1968) Kinetics of biopolymerization on nucleic acid templates. Biopolymers 6: 1-25.
-
(1968)
Biopolymers
, vol.6
, pp. 1-25
-
-
MacDonald, C.1
Gibbs, J.2
Pipkin, A.3
-
22
-
-
84984085494
-
Concerning the kinetics of polypeptide synthesis on polyribosomes
-
MacDonald C, Gibbs J (1969) Concerning the kinetics of polypeptide synthesis on polyribosomes. Biopolymers 7: 707-725.
-
(1969)
Biopolymers
, vol.7
, pp. 707-725
-
-
MacDonald, C.1
Gibbs, J.2
-
23
-
-
0019178883
-
Mathematical modeling of translation of mRNA in eucaryotes; steady states, time-dependent processes and application to reticulocytes
-
Heinrich R, Rapoport T (1980) Mathematical modeling of translation of mRNA in eucaryotes; steady states, time-dependent processes and application to reticulocytes. J Theor Biol 86: 279-313.
-
(1980)
J Theor Biol
, vol.86
, pp. 279-313
-
-
Heinrich, R.1
Rapoport, T.2
-
24
-
-
0016230230
-
Some stochastic models for protein biosynthesis
-
Hiernaux J (1974) Some stochastic models for protein biosynthesis. Biophys Chem 2: 70-75.
-
(1974)
Biophys Chem
, vol.2
, pp. 70-75
-
-
Hiernaux, J.1
-
25
-
-
0016180710
-
Model for the regulation of mRNA translation applied to haemoglobin synthesis
-
Lodish H (1974) Model for the regulation of mRNA translation applied to haemoglobin synthesis. Nature 251: 385-388.
-
(1974)
Nature
, vol.251
, pp. 385-388
-
-
Lodish, H.1
-
26
-
-
0344100118
-
A mathematical model for elongation of a peptide chain
-
Hiernaux J (2003) A mathematical model for elongation of a peptide chain. B Math Biol 65: 1095-1109.
-
(2003)
B Math Biol
, vol.65
, pp. 1095-1109
-
-
Hiernaux, J.1
-
27
-
-
33645775569
-
An algorithmic framework for genome-wide modeling and analysis of translation networks
-
Mehra A, Hatzimanikatis V (2006) An algorithmic framework for genome-wide modeling and analysis of translation networks. Biophys J 90: 1136-1146.
-
(2006)
Biophys J
, vol.90
, pp. 1136-1146
-
-
Mehra, A.1
Hatzimanikatis, V.2
-
28
-
-
33846820156
-
A model for protein translation: Polysome self-organization leads to maximum protein synthesis rates
-
Zouridis H, Hatzimanikatis V (2007) A model for protein translation: Polysome self-organization leads to maximum protein synthesis rates. Biophys J 92: 717-730.
-
(2007)
Biophys J
, vol.92
, pp. 717-730
-
-
Zouridis, H.1
Hatzimanikatis, V.2
-
29
-
-
51049096159
-
Effects of codon distributions and tRNA competition on protein translation
-
Zouridis H, Hatzimanikatis V (2008) Effects of codon distributions and tRNA competition on protein translation. Biophys J 95: 1018-1033.
-
(2008)
Biophys J
, vol.95
, pp. 1018-1033
-
-
Zouridis, H.1
Hatzimanikatis, V.2
-
30
-
-
0015131829
-
Translational control of protein synthesis: A simulation study
-
Vassart G, Dumont J, Cantraine F (1971) Translational control of protein synthesis: A simulation study. Biochim Biophys Acta 247: 471-485.
-
(1971)
Biochim Biophys Acta
, vol.247
, pp. 471-485
-
-
Vassart, G.1
Dumont, J.2
Cantraine, F.3
-
31
-
-
33645414272
-
A kinetic model of protein synthesis
-
Lodish H, Bergmann J (1979) A kinetic model of protein synthesis. J Biol Chem 254: 1927-1937.
-
(1979)
J Biol Chem
, vol.254
, pp. 1927-1937
-
-
Lodish, H.1
Bergmann, J.2
-
32
-
-
0019877609
-
Model for messenger-RNA translation during amino-acid starvation applied to the calculation of protein synthetic error rates
-
Harley C, Pollard J, Stanners C, Goldstein S (1981) Model for messenger-RNA translation during amino-acid starvation applied to the calculation of protein synthetic error rates. J Biol Chem 256: 786-794.
-
(1981)
J Biol Chem
, vol.256
, pp. 786-794
-
-
Harley, C.1
Pollard, J.2
Stanners, C.3
Goldstein, S.4
-
33
-
-
0029892353
-
Polyribosome dynamics: Size-distribution as a function of attachment, translocation and release of ribosomes
-
Singh U (1996) Polyribosome dynamics: Size-distribution as a function of attachment, translocation and release of ribosomes. J Theor Biol 179: 147-159.
-
(1996)
J Theor Biol
, vol.179
, pp. 147-159
-
-
Singh, U.1
-
34
-
-
0031029852
-
Stochastic mechanisms in gene expression
-
McAdams H, Arkin A (1997) Stochastic mechanisms in gene expression. Proc Natl Acad Sci USA 94: 814-819.
-
(1997)
Proc Natl Acad Sci USA
, vol.94
, pp. 814-819
-
-
McAdams, H.1
Arkin, A.2
-
36
-
-
15744378289
-
Numerical simulation of stochastic gene circuits
-
Salis H, Kaznessis Y (2005) Numerical simulation of stochastic gene circuits. Comput Chem Eng 29: 577-588.
-
(2005)
Comput Chem Eng
, vol.29
, pp. 577-588
-
-
Salis, H.1
Kaznessis, Y.2
-
37
-
-
49349113285
-
Ribosome collisions and translation efficiency: Optimization by codon usage and mRNA destabilization
-
Mitarai N, Sneppen K, Pedersen S (2008) Ribosome collisions and translation efficiency: Optimization by codon usage and mRNA destabilization. J Mol Biol 382: 236-245.
-
(2008)
J Mol Biol
, vol.382
, pp. 236-245
-
-
Mitarai, N.1
Sneppen, K.2
Pedersen, S.3
-
38
-
-
33645429016
-
Exact stochastic simulation of coupled chemical-reactions
-
Gillespie D (1977) Exact stochastic simulation of coupled chemical-reactions. J Phys Chem-Us 81: 2340-2361.
-
(1977)
J Phys Chem-Us
, vol.81
, pp. 2340-2361
-
-
Gillespie, D.1
-
39
-
-
44049109914
-
A rigorous derivation of the chemical master equation
-
Gillespie D (1992) A rigorous derivation of the chemical master equation. Physica A 188: 404-425.
-
(1992)
Physica A
, vol.188
, pp. 404-425
-
-
Gillespie, D.1
-
40
-
-
0000364095
-
Efficient monte carlo methods for the simulation of catalytic surface reactions
-
Lukkien J, Segers J, Hilbers P, Gelten R, Jansen A (1998) Efficient monte carlo methods for the simulation of catalytic surface reactions. Phys Rev E 58: 2598-2610.
-
(1998)
Phys Rev E
, vol.58
, pp. 2598-2610
-
-
Lukkien, J.1
Segers, J.2
Hilbers, P.3
Gelten, R.4
Jansen, A.5
-
41
-
-
0034225547
-
The chemical Langevin equation
-
Gillespie D (2000) The chemical Langevin equation. J Chem Phys 113: 297-306.
-
(2000)
J Chem Phys
, vol.113
, pp. 297-306
-
-
Gillespie, D.1
-
42
-
-
0001144902
-
Efficient exact stochastic simulation of chemical systems with many species and many channels
-
Gibson M, Bruck J (2000) Efficient exact stochastic simulation of chemical systems with many species and many channels. J Phys Chem A 104: 1876-1889.
-
(2000)
J Phys Chem A
, vol.104
, pp. 1876-1889
-
-
Gibson, M.1
Bruck, J.2
-
43
-
-
17644396339
-
Dizzy: Stochastic simulation of large-scale genetic regulatory networks
-
Ramsey S, Orrell D, Bolouri H (2005) Dizzy: stochastic simulation of large-scale genetic regulatory networks. J Bioinform Comput Biol 3: 415-436.
-
(2005)
J Bioinform Comput Biol
, vol.3
, pp. 415-436
-
-
Ramsey, S.1
Orrell, D.2
Bolouri, H.3
-
44
-
-
17644372713
-
Dizzy: Stochastic simulation of large-scale genetic regulatory networks (supplementary material)
-
Ramsey S, Orrell D, Bolouri H (2005) Dizzy: stochastic simulation of large-scale genetic regulatory networks (supplementary material). J Bioinform Comput Biol 3: 437-454.
-
(2005)
J Bioinform Comput Biol
, vol.3
, pp. 437-454
-
-
Ramsey, S.1
Orrell, D.2
Bolouri, H.3
-
45
-
-
0042845842
-
Ribosome recycling, diffusion, and mRNA loop formation in translational regulation
-
Chou T (2003) Ribosome recycling, diffusion, and mRNA loop formation in translational regulation. Biophys J 85: 755-773.
-
(2003)
Biophys J
, vol.85
, pp. 755-773
-
-
Chou, T.1
-
46
-
-
18144385852
-
Clustered bottlenecks in mRNA translation and protein synthesis
-
Chou T, Lakatos G (2005) Clustered bottlenecks in mRNA translation and protein synthesis. Phys Rev Lett 93: 198101.
-
(2005)
Phys Rev Lett
, vol.93
, pp. 198101
-
-
Chou, T.1
Lakatos, G.2
-
47
-
-
42749107428
-
Totally asymmetric exclusion process with extended objects: A model for protein synthesis
-
Shaw L, Zia R, Lee K (2003) Totally asymmetric exclusion process with extended objects: A model for protein synthesis. Phys Rev E 68: 021910.
-
(2003)
Phys Rev E
, vol.68
, pp. 021910
-
-
Shaw, L.1
Zia, R.2
Lee, K.3
-
48
-
-
42749107950
-
Mean-field approaches to the totally asymmetric exclusion process with quenched disorder and large particles
-
Shaw L, Sethna J, Lee K (2004) Mean-field approaches to the totally asymmetric exclusion process with quenched disorder and large particles. Phys Rev E 70: 021901.
-
(2004)
Phys Rev E
, vol.70
, pp. 021901
-
-
Shaw, L.1
Sethna, J.2
Lee, K.3
-
49
-
-
34249900723
-
Towards a model for protein production rates
-
Dong J, Schmittmann B, Zia R (2007) Towards a model for protein production rates. J Stat Phys 128: 21-34.
-
(2007)
J Stat Phys
, vol.128
, pp. 21-34
-
-
Dong, J.1
Schmittmann, B.2
Zia, R.3
-
50
-
-
60349124067
-
Fluctuations in protein synthesis from a single RNA template: Stochastic kinetics of ribosomes
-
Garai A, Chowdhury D, Ramakrishnan T (2009) Fluctuations in protein synthesis from a single RNA template: Stochastic kinetics of ribosomes. Phys Rev E 79: 011916.
-
(2009)
Phys Rev E
, vol.79
, pp. 011916
-
-
Garai, A.1
Chowdhury, D.2
Ramakrishnan, T.3
-
51
-
-
36149030302
-
Exact solution of a 1d asymmetric exclusion model using a matrix formulation
-
Derrida B, Evans M, Hakim V, Pasquier V (1993) Exact solution of a 1d asymmetric exclusion model using a matrix formulation. J Phys A Math Gen 26: 1493-1517.
-
(1993)
J Phys a Math Gen
, vol.26
, pp. 1493-1517
-
-
Derrida, B.1
Evans, M.2
Hakim, V.3
Pasquier, V.4
-
52
-
-
0040629192
-
Phase transitions in and exactly soluble onedimensional exclusion process
-
Schütz G, Domany E (1993) Phase transitions in and exactly soluble onedimensional exclusion process. J Stat Phys 72: 277-296.
-
(1993)
J Stat Phys
, vol.72
, pp. 277-296
-
-
Schütz, G.1
Domany, E.2
-
54
-
-
33748699575
-
Stochastic kinetics description of a simple transcription model
-
Roussel MR, Zhu R (2006) Stochastic kinetics description of a simple transcription model. B Math Biol 68: 1681-1713.
-
(2006)
B Math Biol
, vol.68
, pp. 1681-1713
-
-
Roussel, M.R.1
Zhu, R.2
-
55
-
-
34247550417
-
Validation of an algorithm for delay stochastic simulation of transcription and translation in prokaryotic gene expression
-
Roussel M, Zhu R (2006) Validation of an algorithm for delay stochastic simulation of transcription and translation in prokaryotic gene expression. Phys Biol 3: 274-284.
-
(2006)
Phys Biol
, vol.3
, pp. 274-284
-
-
Roussel, M.1
Zhu, R.2
-
56
-
-
34248147513
-
Stochastic delay differential equations for genetic regulatory networks
-
Tian T, Burrage K, Burrage P, Carletti M (2007) Stochastic delay differential equations for genetic regulatory networks. J Comput Appl Math 205: 696-707.
-
(2007)
J Comput Appl Math
, vol.205
, pp. 696-707
-
-
Tian, T.1
Burrage, K.2
Burrage, P.3
Carletti, M.4
-
57
-
-
0033016717
-
Correlation between protein and mRNA abundance in yeast
-
Gygi S, Rochon Y, Franza B, Aebersold R (1999) Correlation between protein and mRNA abundance in yeast. Mol Cell Biol 19: 1720-1730.
-
(1999)
Mol Cell Biol
, vol.19
, pp. 1720-1730
-
-
Gygi, S.1
Rochon, Y.2
Franza, B.3
Aebersold, R.4
-
58
-
-
0035805255
-
Integrated genomic and proteomic analyses of a systematically perturbed metabolic network
-
Ideker T, Thorsson V, Ranish J, Christmas R, Buhler J, et al. (2001) Integrated genomic and proteomic analyses of a systematically perturbed metabolic network. Science 292: 929-934.
-
(2001)
Science
, vol.292
, pp. 929-934
-
-
Ideker, T.1
Thorsson, V.2
Ranish, J.3
Christmas, R.4
Buhler, J.5
-
59
-
-
0345871250
-
Insights into the relation between mRNA and protein expression patterns: Ii. experimental observations in Escherichia coli
-
Lee P, Shaw L, Choe L, Mehra A, Hatzimanikatis V, et al. (2003) Insights into the relation between mRNA and protein expression patterns: Ii. experimental observations in Escherichia coli. Biotechnol Bioeng 84: 834-841.
-
(2003)
Biotechnol Bioeng
, vol.84
, pp. 834-841
-
-
Lee, P.1
Shaw, L.2
Choe, L.3
Mehra, A.4
Hatzimanikatis, V.5
-
60
-
-
0347132484
-
Insights into the relation between mRNA and protein expression patterns: I. theoretical considerations
-
Mehra A, Lee K, Hatzimanikatis V (2003) Insights into the relation between mRNA and protein expression patterns: I. theoretical considerations. Biotechnol Bioeng 84: 822-833.
-
(2003)
Biotechnol Bioeng
, vol.84
, pp. 822-833
-
-
Mehra, A.1
Lee, K.2
Hatzimanikatis, V.3
-
61
-
-
2642566765
-
Gene expression analyzed by high-resolution state array analysis and quantitative proteomics
-
MacKay V, Li X, Flory M, Turcott E, Law G, et al. (2004) Gene expression analyzed by high-resolution state array analysis and quantitative proteomics. Mol Cell Proteomics 3: 478-489.
-
(2004)
Mol Cell Proteomics
, vol.3
, pp. 478-489
-
-
Mackay, V.1
Li, X.2
Flory, M.3
Turcott, E.4
Law, G.5
-
62
-
-
0027250549
-
Synthesis of proteins in Escherichia coli is limited by the concentration of free ribosomes
-
Vind J, Sørensen M, Rasmussen M, Pedersen S (1993) Synthesis of proteins in Escherichia coli is limited by the concentration of free ribosomes. J Mol Biol 231: 678-688.
-
(1993)
J Mol Biol
, vol.231
, pp. 678-688
-
-
Vind, J.1
Sørensen, M.2
Rasmussen, M.3
Pedersen, S.4
-
63
-
-
0026409389
-
Absolute in Vivo translation rates of individual codons in Escherichia coli
-
Sørensen M, Pedersen S (1991) Absolute in Vivo translation rates of individual codons in Escherichia coli. J Mol Biol 222: 265-280.
-
(1991)
J Mol Biol
, vol.222
, pp. 265-280
-
-
Sørensen, M.1
Pedersen, S.2
-
64
-
-
0029873397
-
Rate of translation of natural mRNAs in an optimized in Vitro system
-
Pavlov M, Ehrenberg M (1996) Rate of translation of natural mRNAs in an optimized in Vitro system. Arch Biochem Biophys 328: 9-16.
-
(1996)
Arch Biochem Biophys
, vol.328
, pp. 9-16
-
-
Pavlov, M.1
Ehrenberg, M.2
-
65
-
-
0034904102
-
Cell-free translation reconstituted with purified components
-
Shimizu Y, Inoue A, Tomari Y, Suzuki T, Yokogawa T, et al. (2001) Cell-free translation reconstituted with purified components. Nat Biotechnol 19: 751-755.
-
(2001)
Nat Biotechnol
, vol.19
, pp. 751-755
-
-
Shimizu, Y.1
Inoue, A.2
Tomari, Y.3
Suzuki, T.4
Yokogawa, T.5
-
67
-
-
10644272391
-
-
Upper Saddle River: Prentice Hall, first edition
-
Lewin B (2004) Genes VIII. Upper Saddle River: Prentice Hall, first edition
-
(2004)
Genes VIII
-
-
Lewin, B.1
-
68
-
-
0000640710
-
-
Neidhart F, ed., Washington, DC.: American Society for Microbiology, chapter 97 Modulation of Chemical Composition and Other Parameters of the Cell by Growth Rate
-
Neidhart F, ed. (1996) Escherichia coli and Salmonella typhimurium: Cellular and Molecular Biology, Washington, DC.: American Society for Microbiology, chapter 97 Modulation of Chemical Composition and Other Parameters of the Cell by Growth Rate. pp 1553-1569.
-
(1996)
Escherichia Coli and Salmonella Typhimurium: Cellular and Molecular Biology
, pp. 1553-1569
-
-
-
69
-
-
0017389047
-
Transcription and translation initiation frequencies of the Escherichia coli lac operon
-
Kennell D, Riezman H (1977) Transcription and translation initiation frequencies of the Escherichia coli lac operon. J Mol Biol 114: 1-21.
-
(1977)
J Mol Biol
, vol.114
, pp. 1-21
-
-
Kennell, D.1
Riezman, H.2
-
70
-
-
0042678388
-
Lattice gas models in contact with stochastic reservoirs: Local equilibrium and relaxation to the steady state
-
Eyink G, Lebowitz J, Spohn H (1991) Lattice gas models in contact with stochastic reservoirs: Local equilibrium and relaxation to the steady state. Commun Math Phys 140: 119-131.
-
(1991)
Commun Math Phys
, vol.140
, pp. 119-131
-
-
Eyink, G.1
Lebowitz, J.2
Spohn, H.3
-
71
-
-
42749106314
-
Shock formation in an exclusion process with creation and annihilation
-
Evans M, Juhász R, Santen L (2003) Shock formation in an exclusion process with creation and annihilation. Phys Rev E 68: 026117.
-
(2003)
Phys Rev E
, vol.68
, pp. 026117
-
-
Evans, M.1
Juhász, R.2
Santen, L.3
-
72
-
-
42749104044
-
Disordered asymmetric simple exclusion process: Mean-field treatment
-
Harris R, Stinchcombe R (2004) Disordered asymmetric simple exclusion process: Mean-field treatment. Phys Rev E 70: 016108.
-
(2004)
Phys Rev E
, vol.70
, pp. 016108
-
-
Harris, R.1
Stinchcombe, R.2
-
73
-
-
4444383723
-
Exclusion process for particles of arbitrary extension: Hydrodynamic limit and algebraic properties
-
Schönherr G, Schütz G (2004) Exclusion process for particles of arbitrary extension: Hydrodynamic limit and algebraic properties. J Phys A Math Gen 37: 8215-8231.
-
(2004)
J Phys a Math Gen
, vol.37
, pp. 8215-8231
-
-
Schönherr, G.1
Schütz, G.2
-
74
-
-
37649027860
-
Hard rod gas with long-range interactions: Exact predictions for hydrodynamic properties of continuum systems from discrete models
-
Schönherr G (2005) Hard rod gas with long-range interactions: Exact predictions for hydrodynamic properties of continuum systems from discrete models. Phys Rev E 71: 026122.
-
(2005)
Phys Rev E
, vol.71
, pp. 026122
-
-
Schönherr, G.1
-
75
-
-
50249096423
-
Phase transition in the two-component symmetric exclusion process with open boundaries
-
Brzank A, Schütz G (2007) Phase transition in the two-component symmetric exclusion process with open boundaries. J Stat Mech Theory-E P08028.
-
(2007)
J Stat Mech Theory-E
-
-
Brzank, A.1
Schütz, G.2
-
76
-
-
0019024046
-
Novel intermediates in the synthesis of maltose-binding protein in Escherichia coli
-
Randall L, Josefsson L, Hardy J (1980) Novel intermediates in the synthesis of maltose-binding protein in Escherichia coli. Eur J Biochem 107: 375-379.
-
(1980)
Eur J Biochem
, vol.107
, pp. 375-379
-
-
Randall, L.1
Josefsson, L.2
Hardy, J.3
-
78
-
-
0024962419
-
Rates of aminoacyl-tRNA selection at 29 sense codons in vivo
-
Curran J, Yarus M (1989) Rates of aminoacyl-tRNA selection at 29 sense codons in vivo. J Mol Biol 209: 65-77.
-
(1989)
J Mol Biol
, vol.209
, pp. 65-77
-
-
Curran, J.1
Yarus, M.2
-
79
-
-
0024405193
-
Codon usage determines elongation rate in Escherichia coli
-
Sørensen M, Kurland CG, Pedersen S (1989) Codon usage determines elongation rate in Escherichia coli. J Mol Biol 207: 365-377.
-
(1989)
J Mol Biol
, vol.207
, pp. 365-377
-
-
Sørensen, M.1
Kurland, C.G.2
Pedersen, S.3
-
80
-
-
33645399045
-
A model of protein translation including codon bias, nonsense errors and ribosome recycling
-
Gilchrist M, Wagner A (2006) A model of protein translation including codon bias, nonsense errors and ribosome recycling. J Theor Biol 251: 417-434.
-
(2006)
J Theor Biol
, vol.251
, pp. 417-434
-
-
Gilchrist, M.1
Wagner, A.2
-
81
-
-
28944434119
-
Real-time kinetics of gene activity in individual bacteria
-
Golding I, Paulsson J, Zawilski S, Cox E (2005) Real-time kinetics of gene activity in individual bacteria. Cell 123: 1025-1036.
-
(2005)
Cell
, vol.123
, pp. 1025-1036
-
-
Golding, I.1
Paulsson, J.2
Zawilski, S.3
Cox, E.4
-
82
-
-
33645033645
-
Probing gene expression in live cells, one protein molecule at a time
-
Yu J, Xiao J, Ren X, Lao K, Xie X (2006) Probing gene expression in live cells, one protein molecule at a time. Science 311: 1600-1603.
-
(2006)
Science
, vol.311
, pp. 1600-1603
-
-
Yu, J.1
Xiao, J.2
Ren, X.3
Lao, K.4
Xie, X.5
-
83
-
-
0032584643
-
Transcription - an integrated model of the transcription complex in elongation, termination, and editing
-
von Hippel P (1998) Transcription - an integrated model of the transcription complex in elongation, termination, and editing. Science 281: 660-665.
-
(1998)
Science
, vol.281
, pp. 660-665
-
-
von Hippel, P.1
-
84
-
-
0037058904
-
Reaction pathways in transcript elongation
-
von Hippel PZ (2002) Reaction pathways in transcript elongation. Biophys Chem 101-102: 401-423.
-
(2002)
Biophys Chem
, vol.101-102
, pp. 401-423
-
-
von Hippel, P.Z.1
-
85
-
-
14644407528
-
Thinking quantitatively about transcriptional regulation
-
Greive S, von Hippel P (2005) Thinking quantitatively about transcriptional regulation. Nat Rev Mol Cell Biol 6: 221-232.
-
(2005)
Nat Rev Mol Cell Biol
, vol.6
, pp. 221-232
-
-
Greive, S.1
von Hippel, P.2
-
86
-
-
0142127778
-
Motion of RNA polymerase along DNA: A stochastic model
-
Julicher F, Bruinsma R (1998) Motion of RNA polymerase along DNA: A stochastic model. Biophys J 74: 1169-1185.
-
(1998)
Biophys J
, vol.74
, pp. 1169-1185
-
-
Julicher, F.1
Bruinsma, R.2
-
88
-
-
7444253928
-
Sequence-dependent kinetic model for transcription elongation by RNA polymerase
-
Bai L, Shundrovsky A, Wang M (2004) Sequence-dependent kinetic model for transcription elongation by RNA polymerase. J Mol Biol 344: 335-349.
-
(2004)
J Mol Biol
, vol.344
, pp. 335-349
-
-
Bai, L.1
Shundrovsky, A.2
Wang, M.3
-
89
-
-
85030301376
-
mRNA stability and plasmid copy number effects on gene expression from an inducible promoter system
-
Carrier T, Jones K, Keasling J (1997) mRNA Stability and Plasmid Copy Number Effects on Gene Expression from an Inducible Promoter System. J Theor Biol 189: 195-209.
-
(1997)
J Theor Biol
, vol.189
, pp. 195-209
-
-
Carrier, T.1
Jones, K.2
Keasling, J.3
-
90
-
-
64749109255
-
Delayed stochastic model of transcription at the single nucleotide level
-
Ribeiro A, Smolander O, Rajala T, Häkkinen A, Yli-Harja O (2009) Delayed stochastic model of transcription at the single nucleotide level. J Comput Biol 16: 539-553.
-
(2009)
J Comput Biol
, vol.16
, pp. 539-553
-
-
Ribeiro, A.1
Smolander, O.2
Rajala, T.3
Häkkinen, A.4
Yli-Harja, O.5
-
91
-
-
0038760038
-
Free RNA polymerase and modeling global transcription in Escherichia coli
-
Bremer H, Dennis P, Ehrenberg M (2003) Free RNA polymerase and modeling global transcription in Escherichia coli. Biochimie 85: 597-609.
-
(2003)
Biochimie
, vol.85
, pp. 597-609
-
-
Bremer, H.1
Dennis, P.2
Ehrenberg, M.3
-
92
-
-
15444350252
-
The complete genome sequence of Escherichia coli K-12
-
Blattner F (1997) The complete genome sequence of Escherichia coli K-12. Science 277: 1453-1469.
-
(1997)
Science
, vol.277
, pp. 1453-1469
-
-
Blattner, F.1
-
93
-
-
0017708060
-
Nucleotide sequences of ribosome recognition sites in messenger RNAs of vessicular stomatitis virus
-
Rose J (1977) Nucleotide sequences of ribosome recognition sites in messenger RNAs of vessicular stomatitis virus. Proc Natl Acad Sci USA 74: 3672-3676.
-
(1977)
Proc Natl Acad Sci USA
, vol.74
, pp. 3672-3676
-
-
Rose, J.1
|