Towards a model for protein production rates

Journal of Statistical Physics

Volumn 128, Issue 1-2, 2007, Pages 21-34

  Dong, J J ^a   Schmittmann, B ^a   Zia, R K P ^a  

^a VIRGINIA POLYTECHNIC INSTITUTE AND STATE UNIVERSITY   (United States)

Author keywords

Protein production rates; Totally asymmetric simple exclusion process; Translation

Indexed keywords

EID: 34249900723     PISSN: 00224715     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10955-006-9134-7     Document Type: Conference Paper

References (25)

1. C. MacDonald, J. Gibbs and A. Pipkin, Biopolymers 6:1 (1968);
2. MacDonald and J. Gibbs, Biopolymers 7:707 (1969).
3. B. Derrida, E. Domany and D. Mukamel, J. Stat. Phys. 69:667 (1992).
4. B. Derrida, M. R. Evans, V. Hakim and V Pasquier, J. Phys. A: Math. Gen. 26:1493 (1993).
5. G. M. Schütz and E. Domany, J. Stat. Phys. 72:277 (1993).
6. B. Derrida, Phys. Rep. 301:65 (1998).
7. G. M. Schütz, in Phase Transition and Critical Phenomena, edited by C. Domb and J. L. Lebowitz (Academic Press, San Diego, 2000).
8. J. Solomovici, T. Lesnik and C. Reiss, J. Theor. Biol. 185:511 (1997).
9. C. M. Stenström, H. Jin, L. L. Major, W. P. Täte and L. A. Isaksson, Gene 263:273 (2001).
10. T. Chou and G. Lakatos, Phys. Rev. Lett. 93:198101 (2004).
11. M. Robinson, R. Lilley, S. Little, J. S. Emtage, G. Yarranton, P. Stephens, A. Millican, M. Eaton and G. Humphreys, Nucl. Acids Res. 12:6663 (1984).
12. M. A. Sorensen, C. G. Kurland and S. Pedersen, J. Mol. Biol. 207:365 (1989).
13. B. Alberts, A. Johnson, J. Lewis, M. Raff, K. Roberts and P. Walter, in Molecular Biology of the Cell, 4th ed. (Garland Science, New York, NY, 2002)
14. F. Neidhardt and H. Umbarger, in Escherichia coli and Salmonella, 2nd ed., edited by F. C. Neidhardt (ASM Press, Washington, DC, 1996).
15. R. Heinrich and T. Rapoport, J. Theor. Biol. 86:279 (1980).
16. C. Kang and C. Cantor, J. Mol. Struct 181:241 (1985).
17. L. B. Shaw, R. K. P. Zia and K. H. Lee, Phys. Rev. E 68:021910 (2003).
18. J. J. Dong, B. Schmittmann and R. K. P. Zia, to be published.
19. A. Kolomeisky, J. Phys. A: Math. Gen. 31:1153 (1998).
20. S. Janowsky and J. Lebowitz, Phys. Rev. A 45:618 (1992).
21. S. Janowsky and J. Lebowitz, J. Stat. Phys. 77:35 (1994).
22. R. J. Harris and R. B. Stinchcombe, Phys. Rev. E 70:016108 (2004).
23. M. Ha, T. Timonen and M. den Nijs, Phys. Rev. E 68:056122 (2003).
24. For more details, see also M. Ha, PhD thesis, University of Washington, 2003.
25. L. B. Shaw, A. B. Kolomeisky, and K. H. Lee, J. Phys. A: Math. Gen. 37:2105 (2004).