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Volumn 72, Issue 6, 2010, Pages 621-630

Negative regulation of the RTBV promoter by designed zinc finger proteins

Author keywords

Gene regulation; Repression; Rtbv promoter; Synthetic zinc fingers; Transcription factors

Indexed keywords

ARABIDOPSIS; ARABIDOPSIS THALIANA; RICE TUNGRO BACILLIFORM VIRUS; TUNGROVIRUS;

EID: 77954507940     PISSN: 01674412     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11103-010-9600-0     Document Type: Article
Times cited : (12)

References (54)
  • 2
    • 0032437591 scopus 로고    scopus 로고
    • Toward controlling gene expression at will: Specific regulation of the erbB-2/HER-2 promoter by using polydactyl zinc finger proteins constructed from modular building blocks
    • Beerli RR, Segal DJ, Dreier B, Barbas CF III (1998) Toward controlling gene expression at will: specific regulation of the erbB-2/HER-2 promoter by using polydactyl zinc finger proteins constructed from modular building blocks. Proc Natl Acad Sci USA 95:14628-14633
    • (1998) Proc Natl Acad Sci USA , vol.95 , pp. 14628-14633
    • Beerli, R.R.1    Segal, D.J.2    Dreier, B.3    Barbas III, C.F.4
  • 4
    • 0034652141 scopus 로고    scopus 로고
    • Positive and negative regulation of endogenous genes by designed transcription factors
    • Beerli RR, Dreier B, Barbas CF 3rd (2000b) Positive and negative regulation of endogenous genes by designed transcription factors. Proc Natl Acad Sci USA 97:1495-1500
    • (2000) Proc Natl Acad Sci USA , vol.97 , pp. 1495-1500
    • Beerli, R.R.1    Dreier, B.2    Barbas III, C.F.3
  • 5
    • 9444230573 scopus 로고    scopus 로고
    • Designing transcription factor architectures for drug discovery
    • Blancafort P, Segal DJ, Barbas CF 3rd (2004) Designing transcription factor architectures for drug discovery. Mol Pharmacol 66:1361-1371
    • (2004) Mol Pharmacol , vol.66 , pp. 1361-1371
    • Blancafort, P.1    Segal, D.J.2    Barbas III, C.F.3
  • 6
    • 0017184389 scopus 로고
    • A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding
    • Bradford MM (1976) A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem 72:248-254
    • (1976) Anal Biochem , vol.72 , pp. 248-254
    • Bradford, M.M.1
  • 8
    • 0032447801 scopus 로고    scopus 로고
    • Floral dip: A simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana
    • Clough SJ, Bent AF (1998) Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J 16:735-743
    • (1998) Plant J , vol.16 , pp. 735-743
    • Clough, S.J.1    Bent, A.F.2
  • 10
    • 0347635484 scopus 로고    scopus 로고
    • RF2b, a rice bZIP transcription activator, interacts with RF2a and is involved in symptom development of rice tungro disease
    • Dai S, Zhang Z, Chen S, Beachy RN (2004) RF2b, a rice bZIP transcription activator, interacts with RF2a and is involved in symptom development of rice tungro disease. Proc Natl Acad Sci USA 101:687-692
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 687-692
    • Dai, S.1    Zhang, Z.2    Chen, S.3    Beachy, R.N.4
  • 11
    • 33644600891 scopus 로고    scopus 로고
    • Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus
    • Dai S, Zhang Z, Bick J, Beachy RN (2006) Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J Gen Virol 87:715-722
    • (2006) J Gen Virol , vol.87 , pp. 715-722
    • Dai, S.1    Zhang, Z.2    Bick, J.3    Beachy, R.N.4
  • 12
    • 0035800769 scopus 로고    scopus 로고
    • Development of zinc finger domains for recognition of the 50-ANN-30 family of DNA sequences and their use in the construction of artificial transcription factors
    • Dreier B, Beerli RR, Segal DJ, Flippin JD, Barbas CF 3rd (2001) Development of zinc finger domains for recognition of the 50-ANN-30 family of DNA sequences and their use in the construction of artificial transcription factors. J Biol Chem 276:29466-29478
    • (2001) J Biol Chem , vol.276 , pp. 29466-29478
    • Dreier, B.1    Beerli, R.R.2    Segal, D.J.3    Flippin, J.D.4    Barbas III, C.F.5
  • 13
    • 27444444925 scopus 로고    scopus 로고
    • Development of zinc finger domains for recognition of the 50-CNN-30 family DNA sequences and their use in the construction of artificial transcription factors
    • Dreier B, Fuller RP, Segal DJ, Lund CV, Blancafort P, Huber A, Koksch B, Barbas CF 3rd (2005) Development of zinc finger domains for recognition of the 50-CNN-30 family DNA sequences and their use in the construction of artificial transcription factors. J Biol Chem 280:35588-35597
    • (2005) J Biol Chem , vol.280 , pp. 35588-35597
    • Dreier, B.1    Fuller, R.P.2    Segal, D.J.3    Lund, C.V.4    Blancafort, P.5    Huber, A.6    Koksch, B.7    Barbas III, C.F.8
  • 14
    • 27744530147 scopus 로고    scopus 로고
    • Zinc finger nucleases: Custom-designed molecular scissors for genome engineering of plant and mammalian cells
    • Durai S, Mani M, Kandavelou K, Wu J, Porteus MH, Chandrasegaran S (2005) Zinc finger nucleases: custom-designed molecular scissors for genome engineering of plant and mammalian cells. Nucleic Acids Res 33:5978-5990
    • (2005) Nucleic Acids Res , vol.33 , pp. 5978-5990
    • Durai, S.1    Mani, M.2    Kandavelou, K.3    Wu, J.4    Porteus, M.H.5    Chandrasegaran, S.6
  • 15
    • 33644774584 scopus 로고    scopus 로고
    • Inhibition of human immunodeficiency virus type 1 replication with artificial transcription factors targeting the highly conserved primer-binding site
    • Eberhardy SR, Goncalves J, Coelho S, Segal DJ, Berkhout B, Barbas CF 3rd (2006) Inhibition of human immunodeficiency virus type 1 replication with artificial transcription factors targeting the highly conserved primer-binding site. J Virol 80:2873-2883
    • (2006) J Virol , vol.80 , pp. 2873-2883
    • Eberhardy, S.R.1    Goncalves, J.2    Coelho, S.3    Segal, D.J.4    Berkhout, B.5    Barbas III, C.F.6
  • 16
    • 9144228236 scopus 로고    scopus 로고
    • Conservation, diversification and expansion of C2H2 zinc finger proteins in the Arabidopsis thaliana genome
    • Englbrecht CC, Schoof H, Bohm S (2004) Conservation, diversification and expansion of C2H2 zinc finger proteins in the Arabidopsis thaliana genome. BMC Genomics 5:39-56
    • (2004) BMC Genomics , vol.5 , pp. 39-56
    • Englbrecht, C.C.1    Schoof, H.2    Bohm, S.3
  • 18
    • 0028500170 scopus 로고
    • The small, versatile pPZP family of Agrobacterium binary vectors for plant transformation
    • Hajdukiewicz P, Svab Z, Maliga P (1994) The small, versatile pPZP family of Agrobacterium binary vectors for plant transformation. Plant Mol Biol 25:989-994
    • (1994) Plant Mol Biol , vol.25 , pp. 989-994
    • Hajdukiewicz, P.1    Svab, Z.2    Maliga, P.3
  • 19
    • 0025893875 scopus 로고
    • An analysis of the sequence of an infectious clone of rice tungro bacilliform virus, a plant pararetrovirus
    • Hay JM, Jones MC, Blakebrough ML, Dasgupta I, Davies JW, Hull R (1991) An analysis of the sequence of an infectious clone of rice tungro bacilliform virus, a plant pararetrovirus. Nucleic Acids Res 19:2615-2621
    • (1991) Nucleic Acids Res , vol.19 , pp. 2615-2621
    • Hay, J.M.1    Jones, M.C.2    Blakebrough, M.L.3    Dasgupta, I.4    Davies, J.W.5    Hull, R.6
  • 20
    • 0034697261 scopus 로고    scopus 로고
    • Transcriptional activation of the rice tungro bacilliform virus gene is critically dependent on an activator element located immediately upstream of the TATA box
    • He X, Hohn T, Futterer J (2000) Transcriptional activation of the rice tungro bacilliform virus gene is critically dependent on an activator element located immediately upstream of the TATA box. J Biol Chem 275:11799-11808
    • (2000) J Biol Chem , vol.275 , pp. 11799-11808
    • He, X.1    Hohn, T.2    Futterer, J.3
  • 21
    • 0035951827 scopus 로고    scopus 로고
    • Sequence-specific and methylationdependent and -independent binding of rice nuclear proteins to a rice tungro bacilliform virus vascular bundle expression element
    • He X, Futterer J, Hohn T (2001) Sequence-specific and methylationdependent and -independent binding of rice nuclear proteins to a rice tungro bacilliform virus vascular bundle expression element. J Biol Chem 276:2644-2651
    • (2001) J Biol Chem , vol.276 , pp. 2644-2651
    • He, X.1    Futterer, J.2    Hohn, T.3
  • 22
    • 0037079683 scopus 로고    scopus 로고
    • Contribution of downstream promoter elements to transcriptional regulation of the rice tungro bacilliform virus promoter
    • He X, Futterer J, Hohn T (2002) Contribution of downstream promoter elements to transcriptional regulation of the rice tungro bacilliform virus promoter. Nucleic Acids Res 30:497-506
    • (2002) Nucleic Acids Res , vol.30 , pp. 497-506
    • He, X.1    Futterer, J.2    Hohn, T.3
  • 24
    • 0342444416 scopus 로고
    • GUS fusions bglucuronidase as a sensitive and versatile gene fusion marker in higher plants
    • Jefferson RA, Kavanagh TA, Bevan MW (1987) GUS fusions bglucuronidase as a sensitive and versatile gene fusion marker in higher plants. EMBO J 6:3901-3907
    • (1987) EMBO J , vol.6 , pp. 3901-3907
    • Jefferson, R.A.1    Kavanagh, T.A.2    Bevan, M.W.3
  • 25
    • 70350772311 scopus 로고    scopus 로고
    • Custom-designed molecular scissors for site-specific manipulation of the plant and Mammalian genomes
    • Kandavelou K, Chandrasegaran S (2009) Custom-designed molecular scissors for site-specific manipulation of the plant and Mammalian genomes. Methods Mol Biol 544:617-636
    • (2009) Methods Mol Biol , vol.544 , pp. 617-636
    • Kandavelou, K.1    Chandrasegaran, S.2
  • 26
    • 20444379256 scopus 로고    scopus 로고
    • Artificial zinc finger fusions targeting Sp1-binding sites and the trans-activator-responsive element potently repress transcription and replication of HIV-1
    • Kim YS, Kim JM, Jung DL, Kang JE, Lee S, Kim JS, Seol W, Shin HC, Kwon HS, Van Lint C, Hernandez N, Hur MW (2005) Artificial zinc finger fusions targeting Sp1-binding sites and the trans-activator-responsive element potently repress transcription and replication of HIV-1. J Biol Chem 280: 21545-21552
    • (2005) J Biol Chem , vol.280 , pp. 21545-21552
    • Kim, Y.S.1    Kim, J.M.2    Jung, D.L.3    Kang, J.E.4    Lee, S.5    Kim, J.S.6    Seol, W.7    Shin, H.C.8    Kwon, H.S.9    van Lint, C.10    Hernandez, N.11    Hur, M.W.12
  • 27
    • 0030903688 scopus 로고    scopus 로고
    • Design of polydactyl zinc-finger proteins for unique addressing within complex genomes
    • Liu Q, Segal DJ, Ghiara JB, Barbas CF 3rd (1997) Design of polydactyl zinc-finger proteins for unique addressing within complex genomes. Proc Natl Acad Sci USA 94:5525-5530
    • (1997) Proc Natl Acad Sci USA , vol.94 , pp. 5525-5530
    • Liu, Q.1    Segal, D.J.2    Ghiara, J.B.3    Barbas III, C.F.4
  • 29
    • 4344685148 scopus 로고    scopus 로고
    • In vivo selection of combinatorial libraries and designed affinity maturation of polydactyl zinc finger transcription factors for ICAM-1 provides new insights into gene regulation
    • Magnenat L, Blancafort P, Barbas CF 3rd (2004) In vivo selection of combinatorial libraries and designed affinity maturation of polydactyl zinc finger transcription factors for ICAM-1 provides new insights into gene regulation. J Mol Biol 341:635-649
    • (2004) J Mol Biol , vol.341 , pp. 635-649
    • Magnenat, L.1    Blancafort, P.2    Barbas III, C.F.3
  • 31
    • 84982358134 scopus 로고
    • A revised medium for rapid growth and bioassays with tobacco tissue cultures
    • Murashige T, Skoog F (1962) A revised medium for rapid growth and bioassays with tobacco tissue cultures. Physiol Plant 15:473-497
    • (1962) Physiol Plant , vol.15 , pp. 473-497
    • Murashige, T.1    Skoog, F.2
  • 32
    • 0035983229 scopus 로고    scopus 로고
    • Molecular analysis of two complete rice tungro bacilliform virus genomic sequences from India
    • Nath N, Mathur S, Dasgupta I (2002) Molecular analysis of two complete rice tungro bacilliform virus genomic sequences from India. Arch Virol 147:1173-1187
    • (2002) Arch Virol , vol.147 , pp. 1173-1187
    • Nath, N.1    Mathur, S.2    Dasgupta, I.3
  • 33
    • 0036792098 scopus 로고    scopus 로고
    • Regulation of transgene expression in plants with polydactyl zinc finger transcription factors
    • Ordiz MI, Barbas CF 3rd, Beachy RN (2002) Regulation of transgene expression in plants with polydactyl zinc finger transcription factors. Proc Natl Acad Sci USA 99:13290-13295
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 13290-13295
    • Ordiz, M.I.1    Barbas III, C.F.2    Beachy, R.N.3
  • 34
    • 0037452614 scopus 로고    scopus 로고
    • Inhibition of herpes simplex virus 1 gene expression by designer zinc-finger transcription factors
    • Papworth M, Moore M, Isalan M, Minczuk M, Choo Y, Klug A (2003) Inhibition of herpes simplex virus 1 gene expression by designer zinc-finger transcription factors. Proc Natl Acad Sci USA 100:1621-1626
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 1621-1626
    • Papworth, M.1    Moore, M.2    Isalan, M.3    Minczuk, M.4    Choo, Y.5    Klug, A.6
  • 35
    • 0035912713 scopus 로고    scopus 로고
    • Transcription factor RF2a alters expression of the rice tungro bacilliform virus promoter in transgenic tobacco plants
    • Petruccelli S, Dai S, Carcamo R, Yin Y, Chen S, Beachy RN (2001) Transcription factor RF2a alters expression of the rice tungro bacilliform virus promoter in transgenic tobacco plants. Proc Natl Acad Sci USA 98:7635-7640
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 7635-7640
    • Petruccelli, S.1    Dai, S.2    Carcamo, R.3    Yin, Y.4    Chen, S.5    Beachy, R.N.6
  • 36
    • 23444441147 scopus 로고    scopus 로고
    • Gene targeting using zinc finger nucleases
    • Porteus MH, Carroll D (2005) Gene targeting using zinc finger nucleases. Nat Biotechnol 23:967-973
    • (2005) Nat Biotechnol , vol.23 , pp. 967-973
    • Porteus, M.H.1    Carroll, D.2
  • 37
    • 0037452693 scopus 로고    scopus 로고
    • Repression of the HIV-1 50 LTR promoter and inhibition of HIV-1 replication by using engineered zinc-finger transcription factors
    • Reynolds L, Ullman C, Moore M, Isalan M, West MJ, Clapham P, Klug A, Choo Y (2003) Repression of the HIV-1 50 LTR promoter and inhibition of HIV-1 replication by using engineered zinc-finger transcription factors. Proc Natl Acad Sci USA 100:1615-1620
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 1615-1620
    • Reynolds, L.1    Ullman, C.2    Moore, M.3    Isalan, M.4    West, M.J.5    Clapham, P.6    Klug, A.7    Choo, Y.8
  • 38
    • 12244256152 scopus 로고    scopus 로고
    • Regulation of gene expression in Arabidopsis thaliana by artificial zinc finger chimeras
    • Sanchez JP, Ullman C, Moore M, Choo Y, Chua NH (2002) Regulation of gene expression in Arabidopsis thaliana by artificial zinc finger chimeras. Plant Cell Physiol 43:1465-1472
    • (2002) Plant Cell Physiol , vol.43 , pp. 1465-1472
    • Sanchez, J.P.1    Ullman, C.2    Moore, M.3    Choo, Y.4    Chua, N.H.5
  • 39
    • 33645289380 scopus 로고    scopus 로고
    • Regulation of Arabidopsis thaliana 4-coumarate:Coenzyme-A ligase-1 expression by artificial zinc finger chimeras
    • Sanchez JP, Ullman C, Moore M, Choo Y, Chua NH (2006) Regulation of Arabidopsis thaliana 4-coumarate:coenzyme-A ligase-1 expression by artificial zinc finger chimeras. Plant Biotech J 4:103-114
    • (2006) Plant Biotech J , vol.4 , pp. 103-114
    • Sanchez, J.P.1    Ullman, C.2    Moore, M.3    Choo, Y.4    Chua, N.H.5
  • 40
    • 0032981699 scopus 로고    scopus 로고
    • Toward controlling gene expression at will: Selection and design of zinc finger domains recognizing each of the 50-GNN-30 DNA target sequences
    • Segal DJ, Dreier B, Beerli RR, Barbas CF III (1999) Toward controlling gene expression at will: selection and design of zinc finger domains recognizing each of the 50-GNN-30 DNA target sequences. Proc Natl Acad Sci USA 96:2758-2763
    • (1999) Proc Natl Acad Sci USA , vol.96 , pp. 2758-2763
    • Segal, D.J.1    Dreier, B.2    Beerli, R.R.3    Barbas III, C.F.4
  • 41
    • 2442536906 scopus 로고    scopus 로고
    • Attenuation of HIV-1 replication in primary human cells with a designed zinc finger transcription factor
    • Segal DJ, Goncalves J, Eberhardy S, Swan CH, Torbett BE, Li X, Barbas CF 3rd (2004) Attenuation of HIV-1 replication in primary human cells with a designed zinc finger transcription factor. J Biol Chem 279:14509-14519
    • (2004) J Biol Chem , vol.279 , pp. 14509-14519
    • Segal, D.J.1    Goncalves, J.2    Eberhardy, S.3    Swan, C.H.4    Torbett, B.E.5    Li, X.6    Barbas III, C.F.7
  • 42
    • 13444301361 scopus 로고    scopus 로고
    • Inhibition of virus DNA replication by artificial zinc finger proteins
    • Sera T (2005) Inhibition of virus DNA replication by artificial zinc finger proteins. J Virol 79:2614-2619
    • (2005) J Virol , vol.79 , pp. 2614-2619
    • Sera, T.1
  • 44
    • 0347296233 scopus 로고    scopus 로고
    • Controlling gene expression in plants using synthetic zinc finger transcription factors
    • Stege JT, Guan X, Ho T, Beachy RN, Barbas CF 3rd (2002) Controlling gene expression in plants using synthetic zinc finger transcription factors. Plant J 32:1077-1086
    • (2002) Plant J , vol.32 , pp. 1077-1086
    • Stege, J.T.1    Guan, X.2    Ho, T.3    Beachy, R.N.4    Barbas III, C.F.5
  • 46
  • 47
    • 0002808354 scopus 로고    scopus 로고
    • Okada Y(1987) Infection of tobacco protoplasts with in vitro transcribed tobacco mosaic virus RNA using an improved electroporation method
    • Watanabe Y, Mushi T, Okada Y(1987) Infection of tobacco protoplasts with in vitro transcribed tobacco mosaic virus RNA using an improved electroporation method. FEBS Lett 219:65-69
    • FEBS Lett , vol.219 , pp. 65-69
    • Watanabe, Y.1    Mushi, T.2
  • 49
    • 38349131273 scopus 로고    scopus 로고
    • Improving the nutritional value of plant foods through transgenic approaches
    • Wu YM, Mao X, Wang SJ, Li RZ (2004) Improving the nutritional value of plant foods through transgenic approaches. Sheng Wu Gong Cheng Xue Bao 20:471-476
    • (2004) Sheng Wu Gong Cheng Xue Bao , vol.20 , pp. 471-476
    • Wu, Y.M.1    Mao, X.2    Wang, S.J.3    Li, R.Z.4
  • 50
    • 38549136058 scopus 로고    scopus 로고
    • Custom-designed zinc finger nucleases: What is next?
    • Wu J, Kandavelou K, Chandrasegaran S (2007) Custom-designed zinc finger nucleases: what is next? Cell Mol Life Sci 64:2933-2944
    • (2007) Cell Mol Life Sci , vol.64 , pp. 2933-2944
    • Wu, J.1    Kandavelou, K.2    Chandrasegaran, S.3
  • 51
    • 0029311319 scopus 로고
    • The regulatory regions of the rice tungro bacilliform virus promoter and interacting nuclear factors in rice (Oryza sativa L.)
    • Yin Y, Beachy RN (1995) The regulatory regions of the rice tungro bacilliform virus promoter and interacting nuclear factors in rice (Oryza sativa L.). Plant J 7:969-980
    • (1995) Plant J , vol.7 , pp. 969-980
    • Yin, Y.1    Beachy, R.N.2
  • 52
    • 0031279153 scopus 로고    scopus 로고
    • Promoter elements required for phloem-specific gene expression from the RTBV promoter in rice
    • Yin Y, Chen L, Beachy R (1997a) Promoter elements required for phloem-specific gene expression from the RTBV promoter in rice. Plant J 12:1179-1188
    • (1997) Plant J , vol.12 , pp. 1179-1188
    • Yin, Y.1    Chen, L.2    Beachy, R.3
  • 53
    • 0030769739 scopus 로고    scopus 로고
    • RF2a, a bZIP transcriptional activator of the phloem-specific rice tungro bacilliform virus promoter, functions in vascular development
    • Yin Y, Zhu Q, Dai S, Lamb C, Beachy RN (1997b) RF2a, a bZIP transcriptional activator of the phloem-specific rice tungro bacilliform virus promoter, functions in vascular development. EMBO J 16:5247-5259
    • (1997) EMBO J , vol.16 , pp. 5247-5259
    • Yin, Y.1    Zhu, Q.2    Dai, S.3    Lamb, C.4    Beachy, R.N.5
  • 54
    • 0037023384 scopus 로고    scopus 로고
    • A draft sequence of the rice genome (Oryza sativa L. ssp. Indica)
    • Yu JI (2002) A draft sequence of the rice genome (Oryza sativa L. ssp. Indica). Science 296:79-92
    • (2002) Science , vol.296 , pp. 79-92
    • Yu, J.I.1


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