메뉴 건너뛰기




Volumn 11, Issue 1, 2010, Pages

A sequence motif enriched in regions bound by the Drosophila dosage compensation complex

Author keywords

[No Author keywords available]

Indexed keywords

DOSAGE COMPESATION COMPLEX; OLIGONUCLEOTIDE; RIBONUCLEOPROTEIN; UNCLASSIFIED DRUG;

EID: 77951245294     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-11-169     Document Type: Article
Times cited : (7)

References (73)
  • 1
    • 0013847439 scopus 로고
    • Synthesis of ribonucleic acid by the X-chromosomes of Drosophila melanogaster and the problem of dosage compensation
    • 10.1038/207785a0, 5885936
    • Mukherjee AS, Beermann W. Synthesis of ribonucleic acid by the X-chromosomes of Drosophila melanogaster and the problem of dosage compensation. Nature 1965, 207:785-786. 10.1038/207785a0, 5885936.
    • (1965) Nature , vol.207 , pp. 785-786
    • Mukherjee, A.S.1    Beermann, W.2
  • 2
    • 25844491702 scopus 로고    scopus 로고
    • Global regulation of X chromosomal genes by the MSL complex in Drosophila melanogaster
    • 10.1101/gad.1343705, 1240037, 16204180
    • Hamada FN, Park PJ, Gordadze PR, Kuroda MI. Global regulation of X chromosomal genes by the MSL complex in Drosophila melanogaster. Genes Dev 2005, 19:2289-2294. 10.1101/gad.1343705, 1240037, 16204180.
    • (2005) Genes Dev , vol.19 , pp. 2289-2294
    • Hamada, F.N.1    Park, P.J.2    Gordadze, P.R.3    Kuroda, M.I.4
  • 3
    • 25844440873 scopus 로고    scopus 로고
    • The Drosophila MSL complex activates the transcription of target genes
    • 10.1101/gad.1343105, 1240036, 16204179
    • Straub T, Gilfillan GD, Maier VK, Becker PB. The Drosophila MSL complex activates the transcription of target genes. Genes Dev 2005, 19:2284-2288. 10.1101/gad.1343105, 1240036, 16204179.
    • (2005) Genes Dev , vol.19 , pp. 2284-2288
    • Straub, T.1    Gilfillan, G.D.2    Maier, V.K.3    Becker, P.B.4
  • 4
    • 0018953342 scopus 로고
    • Control of X chromosome transcription by the maleless gene in Drosophila
    • 10.1038/285573a0, 7402300
    • Belote JM, Lucchesi JC. Control of X chromosome transcription by the maleless gene in Drosophila. Nature 1980, 285:573-575. 10.1038/285573a0, 7402300.
    • (1980) Nature , vol.285 , pp. 573-575
    • Belote, J.M.1    Lucchesi, J.C.2
  • 5
    • 0000564834 scopus 로고
    • Male-specific lethal mutations of Drosophila melanogaster
    • 1214287, 6781985
    • Belote JM, Lucchesi JC. Male-specific lethal mutations of Drosophila melanogaster. Genetics 1980, 96:165-186. 1214287, 6781985.
    • (1980) Genetics , vol.96 , pp. 165-186
    • Belote, J.M.1    Lucchesi, J.C.2
  • 6
    • 0019776440 scopus 로고
    • Studies on the sex-specific lethals of Drosophila melanogaster. III. A third chromosome male-specific lethal mutant
    • Uchida S, Uenoyama T, Oishi K. Studies on the sex-specific lethals of Drosophila melanogaster. III. A third chromosome male-specific lethal mutant. Jpn J Genet 1981, 56:523-527.
    • (1981) Jpn J Genet , vol.56 , pp. 523-527
    • Uchida, S.1    Uenoyama, T.2    Oishi, K.3
  • 7
    • 0011051522 scopus 로고
    • A new male-specific mutation in Drosophila melanogaster
    • Lucchesi JC, Skripsky T, Tax FE. A new male-specific mutation in Drosophila melanogaster. Genetics 1982, 100:s42.
    • (1982) Genetics , vol.100
    • Lucchesi, J.C.1    Skripsky, T.2    Tax, F.E.3
  • 8
    • 0030891858 scopus 로고    scopus 로고
    • Mof, a putative acetyl transferase gene related to the Tip60 and MOZ human genes and to the SAS genes of yeast, is required for dosage compensation in Drosophila
    • 10.1093/emboj/16.8.2054, 1169808, 9155031
    • Hilfiker A, Hilfiker-Kleiner D, Pannuti A, Lucchesi JC. mof, a putative acetyl transferase gene related to the Tip60 and MOZ human genes and to the SAS genes of yeast, is required for dosage compensation in Drosophila. EMBO J 1997, 2054-2060. 10.1093/emboj/16.8.2054, 1169808, 9155031.
    • (1997) EMBO J , pp. 2054-2060
    • Hilfiker, A.1    Hilfiker-Kleiner, D.2    Pannuti, A.3    Lucchesi, J.C.4
  • 9
    • 0342378132 scopus 로고    scopus 로고
    • RoX1 RNA paints the X chromosome of male Drosophila and is regulated by the dosage compensation system
    • 10.1016/S0092-8674(00)81885-1, 9038336
    • Meller VH, Wu KH, Roman G, Kuroda MI, Davis RL. roX1 RNA paints the X chromosome of male Drosophila and is regulated by the dosage compensation system. Cell 1997, 88:445-457. 10.1016/S0092-8674(00)81885-1, 9038336.
    • (1997) Cell , vol.88 , pp. 445-457
    • Meller, V.H.1    Wu, K.H.2    Roman, G.3    Kuroda, M.I.4    Davis, R.L.5
  • 10
    • 0030975363 scopus 로고    scopus 로고
    • Genes expressed in neurons of adult male Drosophila
    • 10.1016/S0092-8674(00)81886-3, 9038337
    • Amrein H, Axel R. Genes expressed in neurons of adult male Drosophila. Cell 1997, 88:459-469. 10.1016/S0092-8674(00)81886-3, 9038337.
    • (1997) Cell , vol.88 , pp. 459-469
    • Amrein, H.1    Axel, R.2
  • 11
    • 0033166348 scopus 로고    scopus 로고
    • The rox1 and rox2 RNAs are essential components of the compensasome, which mediates dosage compensation in Drosophila
    • 10.1016/S1097-2765(00)80193-8, 10445033
    • Franke A, Baker BS. The rox1 and rox2 RNAs are essential components of the compensasome, which mediates dosage compensation in Drosophila. Mol Cell 1999, 4:117-122. 10.1016/S1097-2765(00)80193-8, 10445033.
    • (1999) Mol Cell , vol.4 , pp. 117-122
    • Franke, A.1    Baker, B.S.2
  • 12
    • 0026566417 scopus 로고
    • Histone H4 isoforms acetylated at specific lysine residues define individual chromosomes and chromatin domains in Drosophila polytene nuclei
    • 10.1016/0092-8674(92)90417-B, 1568251
    • Turner BM, Birley AJ, Lavender J. Histone H4 isoforms acetylated at specific lysine residues define individual chromosomes and chromatin domains in Drosophila polytene nuclei. Cell 1992, 69:375-384. 10.1016/0092-8674(92)90417-B, 1568251.
    • (1992) Cell , vol.69 , pp. 375-384
    • Turner, B.M.1    Birley, A.J.2    Lavender, J.3
  • 13
    • 0028009294 scopus 로고
    • Acetylated histone H4 on the male X chromosome is associated with dosage compensation in Drosophila
    • 10.1101/gad.8.1.96, 8288132
    • Bone JR, Lavender J, Richman R, Palmer MI, Turner BM, Kuroda MI. Acetylated histone H4 on the male X chromosome is associated with dosage compensation in Drosophila. Genes Dev 1994, 8:96-104. 10.1101/gad.8.1.96, 8288132.
    • (1994) Genes Dev , vol.8 , pp. 96-104
    • Bone, J.R.1    Lavender, J.2    Richman, R.3    Palmer, M.I.4    Turner, B.M.5    Kuroda, M.I.6
  • 14
    • 0025944523 scopus 로고
    • The maleless protein associates with the X chromosome to regulate dosage compensation in Drosophila
    • 10.1016/0092-8674(91)90439-6, 1653648
    • Kuroda MI, Kernan MJ, Kreber R, Ganetzky B, Baker BS. The maleless protein associates with the X chromosome to regulate dosage compensation in Drosophila. Cell 1991, 66:935-947. 10.1016/0092-8674(91)90439-6, 1653648.
    • (1991) Cell , vol.66 , pp. 935-947
    • Kuroda, M.I.1    Kernan, M.J.2    Kreber, R.3    Ganetzky, B.4    Baker, B.S.5
  • 15
    • 0027232086 scopus 로고
    • The male-speeific lethal-one (msl- 1) gene of Drosophila melanogaster encodes a novel protein that associates with the X chromosome in males
    • 1205497, 8325488
    • Palmer MJ, Mergner VA, Richman R, Manning JE, Kuroda MI, Lucchesi JC. The male-speeific lethal-one (msl- 1) gene of Drosophila melanogaster encodes a novel protein that associates with the X chromosome in males. Genetics 1993, 134:545-557. 1205497, 8325488.
    • (1993) Genetics , vol.134 , pp. 545-557
    • Palmer, M.J.1    Mergner, V.A.2    Richman, R.3    Manning, J.E.4    Kuroda, M.I.5    Lucchesi, J.C.6
  • 16
    • 0028926535 scopus 로고
    • Molecular characterization of the male-specific lethal-3 gene and investigations of the regulation of dosage compensation in Drosophila
    • Gorman M, Franke A, Baker BS. Molecular characterization of the male-specific lethal-3 gene and investigations of the regulation of dosage compensation in Drosophila. Development 1995, 121:463-475.
    • (1995) Development , vol.121 , pp. 463-475
    • Gorman, M.1    Franke, A.2    Baker, B.S.3
  • 17
    • 0029063585 scopus 로고
    • Expression of msl-2 causes assembly of dosage compensation regulators on the X chromosomes and female lethality in Drosophila
    • 10.1016/0092-8674(95)90007-1, 7781064
    • Kelley RL, Solovyeva I, Lyman LM, Richman R, Solovyev V, Kuroda MI. Expression of msl-2 causes assembly of dosage compensation regulators on the X chromosomes and female lethality in Drosophila. Cell 1995, 81:867-877. 10.1016/0092-8674(95)90007-1, 7781064.
    • (1995) Cell , vol.81 , pp. 867-877
    • Kelley, R.L.1    Solovyeva, I.2    Lyman, L.M.3    Richman, R.4    Solovyev, V.5    Kuroda, M.I.6
  • 18
    • 0028885520 scopus 로고
    • The msl-2 dosage compensation gene of Drosophila encodes a putative DNA-binding protein whose expression is sex specifically regulated by Sex-lethal
    • Bashaw GJ, Baker BS. The msl-2 dosage compensation gene of Drosophila encodes a putative DNA-binding protein whose expression is sex specifically regulated by Sex-lethal. Development 1995, 121:3245-3258.
    • (1995) Development , vol.121 , pp. 3245-3258
    • Bashaw, G.J.1    Baker, B.S.2
  • 19
    • 0029067981 scopus 로고
    • Male-specific lethal 2, a dosage compensation gene of Drosophila, undergoes sex-specific regulation and encodes a protein with a RING finger and a metallothionein-like cysteine cluster
    • 398407, 7796814
    • Zhou S, Yang Y, Scott MJ, Pannuti A, Fehr KC, Eisen A, Koonin EV, Fouts DL, Wrightsman R, Manning JE, Lucchesi JC. Male-specific lethal 2, a dosage compensation gene of Drosophila, undergoes sex-specific regulation and encodes a protein with a RING finger and a metallothionein-like cysteine cluster. EMBO J 1995, 14:2884-2895. 398407, 7796814.
    • (1995) EMBO J , vol.14 , pp. 2884-2895
    • Zhou, S.1    Yang, Y.2    Scott, M.J.3    Pannuti, A.4    Fehr, K.C.5    Eisen, A.6    Koonin, E.V.7    Fouts, D.L.8    Wrightsman, R.9    Manning, J.E.10    Lucchesi, J.C.11
  • 20
    • 0031917787 scopus 로고    scopus 로고
    • Targeting of MOF, a putative histone acetyl transferase, to the X chromosome of Drosophila melanogaster
    • 10.1002/(SICI)1520-6408(1998)22:1<56::AID-DVG6>3.0.CO;2-6, 9499580
    • Gu W, Szauter P, Lucchesi JC. Targeting of MOF, a putative histone acetyl transferase, to the X chromosome of Drosophila melanogaster. Dev Genet 1998, 22:56-64. 10.1002/(SICI)1520-6408(1998)22:1<56::AID-DVG6>3.0.CO;2-6, 9499580.
    • (1998) Dev Genet , vol.22 , pp. 56-64
    • Gu, W.1    Szauter, P.2    Lucchesi, J.C.3
  • 21
    • 33645530936 scopus 로고    scopus 로고
    • High-resolution ChIP-chip analysis reveals that the Drosophila MSL complex selectively identifies active genes on the male X chromosome
    • 10.1101/gad.1400206, 1472287, 16547173
    • Alekseyenko AA, Larschan E, Lai WR, Park PJ, Kuroda MI. High-resolution ChIP-chip analysis reveals that the Drosophila MSL complex selectively identifies active genes on the male X chromosome. Genes Dev 2006, 20:848-857. 10.1101/gad.1400206, 1472287, 16547173.
    • (2006) Genes Dev , vol.20 , pp. 848-857
    • Alekseyenko, A.A.1    Larschan, E.2    Lai, W.R.3    Park, P.J.4    Kuroda, M.I.5
  • 22
    • 33645520163 scopus 로고    scopus 로고
    • Chromosome-wide gene-specific targeting of the Drosophila dosage compensation complex
    • 10.1101/gad.1399406, 1475731, 16547172
    • Gilfillan GD, Straub T, de Wit E, Greil F, Lamm R, van Steensel B, Becker PB. Chromosome-wide gene-specific targeting of the Drosophila dosage compensation complex. Genes Dev 2006, 20:858-870. 10.1101/gad.1399406, 1475731, 16547172.
    • (2006) Genes Dev , vol.20 , pp. 858-870
    • Gilfillan, G.D.1    Straub, T.2    de Wit, E.3    Greil, F.4    Lamm, R.5    van Steensel, B.6    Becker, P.B.7
  • 23
    • 43949085073 scopus 로고    scopus 로고
    • Genome-wide analysis reveals MOF as a key regulator of dosage compensation and gene expression in Drosophila
    • 10.1016/j.cell.2008.04.036, 18510926
    • Kind J, Vaquerizas JM, Gebhardt P, Gentzel M, Luscombe NM, Bertone P, Akhtar A. Genome-wide analysis reveals MOF as a key regulator of dosage compensation and gene expression in Drosophila. Cell 2008, 133:813-828. 10.1016/j.cell.2008.04.036, 18510926.
    • (2008) Cell , vol.133 , pp. 813-828
    • Kind, J.1    Vaquerizas, J.M.2    Gebhardt, P.3    Gentzel, M.4    Luscombe, N.M.5    Bertone, P.6    Akhtar, A.7
  • 24
    • 33645517197 scopus 로고    scopus 로고
    • Targeting determinants of dosage compensation in Drosophila
    • 10.1371/journal.pgen.0020005, 1359073,1359073, 16462942
    • Dahlsveen IK, Gilfillan GD, Shelest VI, Lamm R, Becker PB. Targeting determinants of dosage compensation in Drosophila. PLoS Genet 2006, 2:e5. 10.1371/journal.pgen.0020005, 1359073,1359073, 16462942.
    • (2006) PLoS Genet , vol.2
    • Dahlsveen, I.K.1    Gilfillan, G.D.2    Shelest, V.I.3    Lamm, R.4    Becker, P.B.5
  • 25
    • 34547115738 scopus 로고    scopus 로고
    • Cumulative contributions of weak DNA determinants to targeting the Drosophila dosage compensation complex
    • 10.1093/nar/gkm282, 1920250, 17483514
    • Gilfillan GD, König C, Dahlsveen IK, Prakoura N, Straub T, Lamm R, Fauth T, Becker PB. Cumulative contributions of weak DNA determinants to targeting the Drosophila dosage compensation complex. Nucleic Acids Res 2007, 35:3561-3572. 10.1093/nar/gkm282, 1920250, 17483514.
    • (2007) Nucleic Acids Res , vol.35 , pp. 3561-3572
    • Gilfillan, G.D.1    König, C.2    Dahlsveen, I.K.3    Prakoura, N.4    Straub, T.5    Lamm, R.6    Fauth, T.7    Becker, P.B.8
  • 26
    • 0033588309 scopus 로고    scopus 로고
    • Epigenetic spreading of the Drosophila dosage compensation complex from roX RNA genes into flanking chromatin
    • 10.1016/S0092-8674(00)81979-0, 10481915
    • Kelley RL, Meller VH, Gordadze PR, Roman G, Davis RL, Kuroda MI. Epigenetic spreading of the Drosophila dosage compensation complex from roX RNA genes into flanking chromatin. Cell 1999, 98:513-522. 10.1016/S0092-8674(00)81979-0, 10481915.
    • (1999) Cell , vol.98 , pp. 513-522
    • Kelley, R.L.1    Meller, V.H.2    Gordadze, P.R.3    Roman, G.4    Davis, R.L.5    Kuroda, M.I.6
  • 27
    • 0242573504 scopus 로고    scopus 로고
    • The MSL complex levels are critical for its correct targeting to the chromosomes of Drosophila melanogaster
    • 10.1007/s00412-003-0249-1, 14579126
    • Demakova OV, Kotlikova IV, Gorgadze PR, Alekseyenko AA, Kuroda MI, Zhimulev IF. The MSL complex levels are critical for its correct targeting to the chromosomes of Drosophila melanogaster. Chromosoma 2003, 112:103-115. 10.1007/s00412-003-0249-1, 14579126.
    • (2003) Chromosoma , vol.112 , pp. 103-115
    • Demakova, O.V.1    Kotlikova, I.V.2    Gorgadze, P.R.3    Alekseyenko, A.A.4    Kuroda, M.I.5    Zhimulev, I.F.6
  • 28
    • 14044275031 scopus 로고    scopus 로고
    • X chromosome sites autonomously recruit the dosage compensation complex in Drosophila males
    • 10.1371/journal.pbio.0020341, 521175, 15502872
    • Fagegaltier D, Baker BS. X chromosome sites autonomously recruit the dosage compensation complex in Drosophila males. PLoS Biol 2004, 2:e341. 10.1371/journal.pbio.0020341, 521175, 15502872.
    • (2004) PLoS Biol , vol.2
    • Fagegaltier, D.1    Baker, B.S.2
  • 29
    • 58149165026 scopus 로고    scopus 로고
    • The chromosomal high-affinity binding sites for the Drosophila dosage compensation complex
    • 10.1371/journal.pgen.1000302, 2586088, 19079572
    • Straub T, Grimaud C, Gilfillan GD, Mitterweger A, Becker PB. The chromosomal high-affinity binding sites for the Drosophila dosage compensation complex. PLoS Genet 2008, 4:e1000302. 10.1371/journal.pgen.1000302, 2586088, 19079572.
    • (2008) PLoS Genet , vol.4
    • Straub, T.1    Grimaud, C.2    Gilfillan, G.D.3    Mitterweger, A.4    Becker, P.B.5
  • 31
    • 57149113529 scopus 로고    scopus 로고
    • The MSL3 chromodomain directs a key targeting step for dosage compensation of the Drosophila melanogaster X chromosome
    • 10.1038/nsmb.1520, 2636508, 19029895
    • Sural TH, Peng S, Li B, Workman JL, Park PJ, Kuroda MI. The MSL3 chromodomain directs a key targeting step for dosage compensation of the Drosophila melanogaster X chromosome. Nat Struct Mol Biol 2008, 15:1318-1325. 10.1038/nsmb.1520, 2636508, 19029895.
    • (2008) Nat Struct Mol Biol , vol.15 , pp. 1318-1325
    • Sural, T.H.1    Peng, S.2    Li, B.3    Workman, J.L.4    Park, P.J.5    Kuroda, M.I.6
  • 32
    • 65649142918 scopus 로고    scopus 로고
    • Studies on the short range spreading of the male specific lethal (MSL) complex on the X chromosome in Drosophila
    • 10.1159/000207524, 19420929
    • Sun X, Birchler JA. Studies on the short range spreading of the male specific lethal (MSL) complex on the X chromosome in Drosophila . Cytogenet Genome Res 2009, 124:158-169. 10.1159/000207524, 19420929.
    • (2009) Cytogenet Genome Res , vol.124 , pp. 158-169
    • Sun, X.1    Birchler, J.A.2
  • 33
    • 34547944989 scopus 로고    scopus 로고
    • Cotranscriptional recruitment of the dosage compensation complex to X-linked target genes
    • 10.1101/gad.430807, 1948858, 17699750
    • Kind J, Akhtar A. Cotranscriptional recruitment of the dosage compensation complex to X-linked target genes. Genes Dev 2007, 21:2030-2040. 10.1101/gad.430807, 1948858, 17699750.
    • (2007) Genes Dev , vol.21 , pp. 2030-2040
    • Kind, J.1    Akhtar, A.2
  • 34
    • 34948877575 scopus 로고    scopus 로고
    • MSL complex is attracted to genes marked by H3K36 trimethylation using a sequence-independent mechanism
    • 10.1016/j.molcel.2007.08.011, 17936709
    • Larschan E, Alekseyenko AA, Gortchakov AA, Peng S, Li B, Yang P, Workman JL, Park PJ, Kuroda MI. MSL complex is attracted to genes marked by H3K36 trimethylation using a sequence-independent mechanism. Mol Cell 2007, 28:121-133. 10.1016/j.molcel.2007.08.011, 17936709.
    • (2007) Mol Cell , vol.28 , pp. 121-133
    • Larschan, E.1    Alekseyenko, A.A.2    Gortchakov, A.A.3    Peng, S.4    Li, B.5    Yang, P.6    Workman, J.L.7    Park, P.J.8    Kuroda, M.I.9
  • 35
    • 43249125010 scopus 로고    scopus 로고
    • Transcription-coupled methylation of histone H3 at lysine 36 regulates dosage compensation by enhancing recruitment of the MSL complex in Drosophila melanogaster
    • 10.1128/MCB.00006-08, 2423169, 18347056
    • Bell O, Conrad T, Kind J, Wirbelauer C, Akhtar A, Schübeler D. Transcription-coupled methylation of histone H3 at lysine 36 regulates dosage compensation by enhancing recruitment of the MSL complex in Drosophila melanogaster. Mol Cell Biol 2008, 28:3401-3409. 10.1128/MCB.00006-08, 2423169, 18347056.
    • (2008) Mol Cell Biol , vol.28 , pp. 3401-3409
    • Bell, O.1    Conrad, T.2    Kind, J.3    Wirbelauer, C.4    Akhtar, A.5    Schübeler, D.6
  • 36
    • 70349627026 scopus 로고    scopus 로고
    • Long-range spreading of dosage compensation in Drosophila captures transcribed autosomal genes inserted on X
    • 10.1101/gad.1840409, 19797766
    • Gorchakov AA, Alekseyenko AA, Kharchenko P, Park PJ, Kuroda MI. Long-range spreading of dosage compensation in Drosophila captures transcribed autosomal genes inserted on X. Genes Dev 2009, 23:2266-2271. 10.1101/gad.1840409, 19797766.
    • (2009) Genes Dev , vol.23 , pp. 2266-2271
    • Gorchakov, A.A.1    Alekseyenko, A.A.2    Kharchenko, P.3    Park, P.J.4    Kuroda, M.I.5
  • 37
    • 33845768982 scopus 로고    scopus 로고
    • Dosage compensation: the beginning and end of generalization
    • 10.1038/nrg2013, 17173057
    • Straub T, Becker PB. Dosage compensation: the beginning and end of generalization. Nat Rev Genet 2007, 8:47-57. 10.1038/nrg2013, 17173057.
    • (2007) Nat Rev Genet , vol.8 , pp. 47-57
    • Straub, T.1    Becker, P.B.2
  • 38
    • 44349125862 scopus 로고    scopus 로고
    • DNA sequence and the organization of chromosomal domains
    • 10.1016/j.gde.2008.01.001, 18295474
    • Straub T, Becker PB. DNA sequence and the organization of chromosomal domains. Curr Opin Genet Dev 2008, 18:175-180. 10.1016/j.gde.2008.01.001, 18295474.
    • (2008) Curr Opin Genet Dev , vol.18 , pp. 175-180
    • Straub, T.1    Becker, P.B.2
  • 39
    • 38049172824 scopus 로고    scopus 로고
    • Global patterns of sequence evolution in Drosophila
    • 10.1186/1471-2164-8-408, 2180185, 17996078
    • Gallach M, Arnau V, Marín I. Global patterns of sequence evolution in Drosophila. BMC Genomics 2007, 8:408. 10.1186/1471-2164-8-408, 2180185, 17996078.
    • (2007) BMC Genomics , vol.8 , pp. 408
    • Gallach, M.1    Arnau, V.2    Marín, I.3
  • 40
    • 77951213929 scopus 로고    scopus 로고
    • Fast comparison of DNA sequences by oligonucleotide profiling
    • 10.1186/1756-0500-1-5, 2518268, 18710530
    • Arnau V, Gallach M, Marín I. Fast comparison of DNA sequences by oligonucleotide profiling. BMC Res Notes 2008, 1:5. 10.1186/1756-0500-1-5, 2518268, 18710530.
    • (2008) BMC Res Notes , vol.1 , pp. 5
    • Arnau, V.1    Gallach, M.2    Marín, I.3
  • 43
    • 0034628901 scopus 로고    scopus 로고
    • Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae
    • 10.1006/jmbi.2000.3519, 10698627
    • Hughes JD, Estep PW, Tavazole S, Church GM. Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae. J Mol Biol 2000, 296:1205-1214. 10.1006/jmbi.2000.3519, 10698627.
    • (2000) J Mol Biol , vol.296 , pp. 1205-1214
    • Hughes, J.D.1    Estep, P.W.2    Tavazole, S.3    Church, G.M.4
  • 44
    • 0035224579 scopus 로고    scopus 로고
    • An algorithm for finding signals of unknown length in DNA sequences
    • Pavesi G, Mauri G, Pesole G. An algorithm for finding signals of unknown length in DNA sequences. Bioinformatics 2001, 17(Suppl 1):S207-S214.
    • (2001) Bioinformatics , vol.17 , Issue.SUPPL. 1
    • Pavesi, G.1    Mauri, G.2    Pesole, G.3
  • 45
    • 0036137323 scopus 로고    scopus 로고
    • A higher-order background model improves the detection of promoter regulatory elements by Gibbs sampling
    • 10.1093/bioinformatics/17.12.1113, 11751219
    • Thijs G, Lescot M, Marchal K, Rombauts S, De Moor B, Rouze P, Moreau Y. A higher-order background model improves the detection of promoter regulatory elements by Gibbs sampling. Bioinformatics 2001, 17:1113-1122. 10.1093/bioinformatics/17.12.1113, 11751219.
    • (2001) Bioinformatics , vol.17 , pp. 1113-1122
    • Thijs, G.1    Lescot, M.2    Marchal, K.3    Rombauts, S.4    De Moor, B.5    Rouze, P.6    Moreau, Y.7
  • 46
    • 44949239504 scopus 로고    scopus 로고
    • Discovering sequence motifs with arbitrary insertions and deletions
    • 10.1371/journal.pcbi.1000071, 2323616, 18437229
    • Frith MC, Saunders NF, Kobe B, Bailey TL. Discovering sequence motifs with arbitrary insertions and deletions. PLoS Comput Biol 2008, 4:e1000071. 10.1371/journal.pcbi.1000071, 2323616, 18437229.
    • (2008) PLoS Comput Biol , vol.4
    • Frith, M.C.1    Saunders, N.F.2    Kobe, B.3    Bailey, T.L.4
  • 47
    • 26444584579 scopus 로고    scopus 로고
    • Limitations and potentials of current motif discovery algorithms
    • 10.1093/nar/gki791, 1199555, 16284194
    • Hu J, Li B, Kihara D. Limitations and potentials of current motif discovery algorithms. Nucleic Acids Res 2005, 33:4899-4913. 10.1093/nar/gki791, 1199555, 16284194.
    • (2005) Nucleic Acids Res , vol.33 , pp. 4899-4913
    • Hu, J.1    Li, B.2    Kihara, D.3
  • 49
    • 38549144819 scopus 로고    scopus 로고
    • A survey of DNA motif finding algorithms
    • 10.1186/1471-2105-8-S7-S21, 2099490, 18047721
    • Das MK, Dai HK. A survey of DNA motif finding algorithms. BMC Bioinformatics 2007, 8(Suppl 7):S21. 10.1186/1471-2105-8-S7-S21, 2099490, 18047721.
    • (2007) BMC Bioinformatics , vol.8 , Issue.SUPPL. 7
    • Das, M.K.1    Dai, H.K.2
  • 50
    • 0034201441 scopus 로고    scopus 로고
    • EMBOSS: The European Molecular Biology Open Software Suite
    • 10.1016/S0168-9525(00)02024-2, 10827456
    • Rice P, Longden I, Bleasby A. EMBOSS: The European Molecular Biology Open Software Suite. Trends Genet 2000, 16:276-277. 10.1016/S0168-9525(00)02024-2, 10827456.
    • (2000) Trends Genet , vol.16 , pp. 276-277
    • Rice, P.1    Longden, I.2    Bleasby, A.3
  • 51
    • 22344457014 scopus 로고    scopus 로고
    • EnoLOGOS: a versatile web tool for energy normalized sequence logos
    • Web Server, 10.1093/nar/gki439, 1160200, 15980495
    • Workman CT, Yin Y, Corcoran DL, Ideker T, Stormo GD, Benos PV. enoLOGOS: a versatile web tool for energy normalized sequence logos. Nucleic Acids Res 2005, (33 Web Server):W389-392. 10.1093/nar/gki439, 1160200, 15980495.
    • (2005) Nucleic Acids Res , Issue.33
    • Workman, C.T.1    Yin, Y.2    Corcoran, D.L.3    Ideker, T.4    Stormo, G.D.5    Benos, P.V.6
  • 52
    • 77951242949 scopus 로고    scopus 로고
    • Flybase
    • Flybase D melanogaster 4.3 genome release Flybase., ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/dmel_r4.3_20060303 /fasta/
    • D melanogaster 4.3 genome release
  • 53
    • 77951245147 scopus 로고    scopus 로고
    • Análisis de patrones globales de evolución genómica
    • Universidad de Valencia
    • Gallach M. Análisis de patrones globales de evolución genómica. PhD Thesis 2008, Universidad de Valencia.
    • (2008) PhD Thesis
    • Gallach, M.1
  • 54
    • 0029808078 scopus 로고    scopus 로고
    • The dosage compensation system of Drosophila is co-opted by newly evolved X chromosomes
    • 10.1038/383160a0, 8774878
    • Marín I, Franke A, Bashaw GJ, Baker BS. The dosage compensation system of Drosophila is co-opted by newly evolved X chromosomes. Nature 1996, 383:160-163. 10.1038/383160a0, 8774878.
    • (1996) Nature , vol.383 , pp. 160-163
    • Marín, I.1    Franke, A.2    Bashaw, G.J.3    Baker, B.S.4
  • 55
    • 47149117454 scopus 로고    scopus 로고
    • Evolution of genes and genomes on the Drosophila phylogeny
    • 10.1038/nature06341, 17994087, Drosophila 12 Genomes Consortium
    • Drosophila 12 Genomes Consortium Evolution of genes and genomes on the Drosophila phylogeny. Nature 2007, 450:203-218. 10.1038/nature06341, 17994087, Drosophila 12 Genomes Consortium.
    • (2007) Nature , vol.450 , pp. 203-218
  • 56
    • 1242352089 scopus 로고    scopus 로고
    • Temporal patterns of fruit fly (Drosophila) evolution revealed by mutation clocks
    • 10.1093/molbev/msg236, 12949132
    • Tamura K, Subramanian S, Kumar S. Temporal patterns of fruit fly (Drosophila) evolution revealed by mutation clocks. Mol Biol Evol 2004, 21:36-44. 10.1093/molbev/msg236, 12949132.
    • (2004) Mol Biol Evol , vol.21 , pp. 36-44
    • Tamura, K.1    Subramanian, S.2    Kumar, S.3
  • 57
    • 38649096895 scopus 로고    scopus 로고
    • Codon usage in twelve species of Drosophila
    • 10.1186/1471-2148-7-226, 2213667, 18005411
    • Vicario S, Moriyama EN, Powell JR. Codon usage in twelve species of Drosophila. BMC Evol Biol 2007, 7:226. 10.1186/1471-2148-7-226, 2213667, 18005411.
    • (2007) BMC Evol Biol , vol.7 , pp. 226
    • Vicario, S.1    Moriyama, E.N.2    Powell, J.R.3
  • 58
    • 26444579454 scopus 로고    scopus 로고
    • X-linked genes evolve higher codon bias in Drosophila and Caenorhabditis
    • 10.1534/genetics.105.043497, 1456507, 15965246
    • Singh ND, Davis JC, Petrov DA. X-linked genes evolve higher codon bias in Drosophila and Caenorhabditis. Genetics 2005, 171:145-155. 10.1534/genetics.105.043497, 1456507, 15965246.
    • (2005) Genetics , vol.171 , pp. 145-155
    • Singh, N.D.1    Davis, J.C.2    Petrov, D.A.3
  • 59
    • 0035341311 scopus 로고    scopus 로고
    • Association and spreading of the Drosophila dosage compensation complex from a discrete roX1 chromatin entry site
    • 10.1093/emboj/20.9.2236, 125240, 11331589
    • Kageyama Y, Mengus G, Gilfillan G, Kennedy HG, Stuckenholz C, Kelley RL, Becker PB, Kuroda MI. Association and spreading of the Drosophila dosage compensation complex from a discrete roX1 chromatin entry site. EMBO J 2001, 20:2236-2245. 10.1093/emboj/20.9.2236, 125240, 11331589.
    • (2001) EMBO J , vol.20 , pp. 2236-2245
    • Kageyama, Y.1    Mengus, G.2    Gilfillan, G.3    Kennedy, H.G.4    Stuckenholz, C.5    Kelley, R.L.6    Becker, P.B.7    Kuroda, M.I.8
  • 60
    • 0037623368 scopus 로고    scopus 로고
    • Sequence-specific targeting of Drosophila roX genes by the MSL dosage compensation complex
    • 10.1016/S1097-2765(03)00147-3, 12718883
    • Park Y, Mengus G, Bai X, Kageyama Y, Meller VH, Becker PB, Kuroda MI. Sequence-specific targeting of Drosophila roX genes by the MSL dosage compensation complex. Mol Cell 2003, 11:977-986. 10.1016/S1097-2765(03)00147-3, 12718883.
    • (2003) Mol Cell , vol.11 , pp. 977-986
    • Park, Y.1    Mengus, G.2    Bai, X.3    Kageyama, Y.4    Meller, V.H.5    Becker, P.B.6    Kuroda, M.I.7
  • 61
    • 1842483224 scopus 로고    scopus 로고
    • Multiple classes of MSL binding sites target dosage compensation to the X chromosome of Drosophila
    • 10.1016/j.cub.2004.03.004, 15043812
    • Oh H, Bone JR, Kuroda MI. Multiple classes of MSL binding sites target dosage compensation to the X chromosome of Drosophila. Curr Biol 2004, 14:481-487. 10.1016/j.cub.2004.03.004, 15043812.
    • (2004) Curr Biol , vol.14 , pp. 481-487
    • Oh, H.1    Bone, J.R.2    Kuroda, M.I.3
  • 62
    • 2242492681 scopus 로고    scopus 로고
    • Extent of chromatin spreading determined by roX RNA recruitment of MSL proteins
    • 10.1126/science.1076686, 12446910
    • Park Y, Kelley RL, Oh H, Kuroda MI, Meller VH. Extent of chromatin spreading determined by roX RNA recruitment of MSL proteins. Science 2002, 298:1620-1623. 10.1126/science.1076686, 12446910.
    • (2002) Science , vol.298 , pp. 1620-1623
    • Park, Y.1    Kelley, R.L.2    Oh, H.3    Kuroda, M.I.4    Meller, V.H.5
  • 63
    • 0024580910 scopus 로고
    • Nonrandom distribution of long mono- and dinucleotide repeats in Drosophila chromosomes: correlations with dosage compensation, heterochromatin, and recombination
    • 362708, 2725493
    • Lowenhaupt K, Rich A, Pardue ML. Nonrandom distribution of long mono- and dinucleotide repeats in Drosophila chromosomes: correlations with dosage compensation, heterochromatin, and recombination. Mol Cell Biol 1989, 9:1173-1182. 362708, 2725493.
    • (1989) Mol Cell Biol , vol.9 , pp. 1173-1182
    • Lowenhaupt, K.1    Rich, A.2    Pardue, M.L.3
  • 65
    • 0034547524 scopus 로고    scopus 로고
    • The evolution of dosage-compensation mechanisms
    • 10.1002/1521-1878(200012)22:12<1106::AID-BIES8>3.0.CO;2-W, 11084626
    • Marín I, Siegal ML, Baker BS. The evolution of dosage-compensation mechanisms. Bioessays 2000, 22:1106-1114. 10.1002/1521-1878(200012)22:12<1106::AID-BIES8>3.0.CO;2-W, 11084626.
    • (2000) Bioessays , vol.22 , pp. 1106-1114
    • Marín, I.1    Siegal, M.L.2    Baker, B.S.3
  • 66
    • 58149347832 scopus 로고    scopus 로고
    • Positive selection at the binding sites of the male-specific lethal complex involved in dosage compensation in Drosophila
    • 10.1534/genetics.107.084244, 2567361, 18780755
    • Bachtrog D. Positive selection at the binding sites of the male-specific lethal complex involved in dosage compensation in Drosophila. Genetics 2008, 180:1123-1129. 10.1534/genetics.107.084244, 2567361, 18780755.
    • (2008) Genetics , vol.180 , pp. 1123-1129
    • Bachtrog, D.1
  • 67
    • 37249054903 scopus 로고    scopus 로고
    • Pervasive and largely lineage-specific adaptive protein evolution in the dosage compensation complex of Drosophila melanogaster
    • 10.1534/genetics.107.079459, 2147993, 18039888
    • Levine MT, Holloway AK, Arshad U, Begun DJ. Pervasive and largely lineage-specific adaptive protein evolution in the dosage compensation complex of Drosophila melanogaster. Genetics 2007, 177:1959-1962. 10.1534/genetics.107.079459, 2147993, 18039888.
    • (2007) Genetics , vol.177 , pp. 1959-1962
    • Levine, M.T.1    Holloway, A.K.2    Arshad, U.3    Begun, D.J.4
  • 68
    • 34848892755 scopus 로고    scopus 로고
    • Species-specific positive selection of the male-specific lethal complex that participates in dosage compensation in Drosophila
    • 10.1073/pnas.0707445104, 2000485, 17878295
    • Rodriguez MA, Vermaak D, Bayes JJ, Malik HS. Species-specific positive selection of the male-specific lethal complex that participates in dosage compensation in Drosophila. Proc Natl Acad Sci USA 2007, 104:15412-15417. 10.1073/pnas.0707445104, 2000485, 17878295.
    • (2007) Proc Natl Acad Sci USA , vol.104 , pp. 15412-15417
    • Rodriguez, M.A.1    Vermaak, D.2    Bayes, J.J.3    Malik, H.S.4
  • 69
    • 33845244857 scopus 로고    scopus 로고
    • Clustered DNA motifs mark X chromosomes for repression by a dosage compensation complex
    • 10.1038/nature05338, 2693371, 17122774
    • McDonel P, Jans J, Peterson BK, Meyer BJ. Clustered DNA motifs mark X chromosomes for repression by a dosage compensation complex. Nature 2006, 444:614-618. 10.1038/nature05338, 2693371, 17122774.
    • (2006) Nature , vol.444 , pp. 614-618
    • McDonel, P.1    Jans, J.2    Peterson, B.K.3    Meyer, B.J.4
  • 70
    • 33847284814 scopus 로고    scopus 로고
    • X chromosome repression by localization of the C. elegans dosage compensation machinery to sites of transcription initiation
    • 10.1038/ng1983, 2753834, 17293863
    • Ercan S, Giresi PG, Whittle CM, Zhang X, Green RD, Lieb JD. X chromosome repression by localization of the C. elegans dosage compensation machinery to sites of transcription initiation. Nat Genet 2007, 39:403-408. 10.1038/ng1983, 2753834, 17293863.
    • (2007) Nat Genet , vol.39 , pp. 403-408
    • Ercan, S.1    Giresi, P.G.2    Whittle, C.M.3    Zhang, X.4    Green, R.D.5    Lieb, J.D.6
  • 71
    • 64649087771 scopus 로고    scopus 로고
    • Two classes of DCC binding elements facilitate binding and spreading of the DCC along C. elegans X-chromosomes
    • 10.1128/MCB.01448-08, 2663307, 19188444
    • Blauwkamp TA, Csankovszki G. Two classes of DCC binding elements facilitate binding and spreading of the DCC along C. elegans X-chromosomes. Mol Cell Biol 2009, 29:2023-2031. 10.1128/MCB.01448-08, 2663307, 19188444.
    • (2009) Mol Cell Biol , vol.29 , pp. 2023-2031
    • Blauwkamp, T.A.1    Csankovszki, G.2
  • 72
    • 33749407724 scopus 로고    scopus 로고
    • Genomic enviroment predicts expression patterns on the human inactive X chromosome
    • 10.1371/journal.pgen.0020151, 1584270, 17009873
    • Carrel L, Park C, Tyekucheva S, Dunn J, Chiaromente F, Makova KD. Genomic enviroment predicts expression patterns on the human inactive X chromosome. PloS Genet 2006, 2:e151. 10.1371/journal.pgen.0020151, 1584270, 17009873.
    • (2006) PloS Genet , vol.2
    • Carrel, L.1    Park, C.2    Tyekucheva, S.3    Dunn, J.4    Chiaromente, F.5    Makova, K.D.6
  • 73
    • 33749368402 scopus 로고    scopus 로고
    • Evidence of influence of genomic DNA sequence on human X chromosome inactivation
    • 10.1371/journal.pcbi.0020113, 1557588,1557588, 16948528
    • Wang Z, Willard HF, Mukherjee S, Furey T. Evidence of influence of genomic DNA sequence on human X chromosome inactivation. Plos Comput Biol 2006, 2:e113. 10.1371/journal.pcbi.0020113, 1557588,1557588, 16948528.
    • (2006) Plos Comput Biol , vol.2
    • Wang, Z.1    Willard, H.F.2    Mukherjee, S.3    Furey, T.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.