Two classes of dosage compensation complex binding elements along caenorhabditis elegans X chromosomes

Molecular and Cellular Biology

Volumn 29, Issue 8, 2009, Pages 2023-2031

  Blauwkamp, Timothy A ^a   Csankovszki, Gyorgyi ^a  

^a UNIVERSITY OF MICHIGAN   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CAENORHABDITIS ELEGANS; CHROMOSOME REARRANGEMENT; CONTROLLED STUDY; DNA BINDING; DNA SEQUENCE; GENE DELETION; GENE DUPLICATION; GENE EXPRESSION REGULATION; NONHUMAN; PRIORITY JOURNAL; REAL TIME POLYMERASE CHAIN REACTION; X CHROMOSOME;

ANIMALS; BINDING SITES; CAENORHABDITIS ELEGANS; CHROMOSOMAL PROTEINS, NON-HISTONE; DOSAGE COMPENSATION, GENETIC; FEMALE; GENE EXPRESSION REGULATION; GENES, HELMINTH; GENES, X-LINKED; NUCLEAR PROTEINS; PROTEIN TRANSPORT; REGULATORY ELEMENTS, TRANSCRIPTIONAL; TRANSCRIPTION, GENETIC; X CHROMOSOME;

ANIMALIA; CAENORHABDITIS ELEGANS;

EID: 64649087771     PISSN: 02707306     EISSN: None     Source Type: Journal    
DOI: 10.1128/MCB.01448-08     Document Type: Article

References (36)

1. Albertson, D. G., R. M. Fishpool, and P. S. Birchall. 1995. Fluorescence in situ hybridization for the detection of DNA and RNA. Methods Cell Biol. 48:339-364.
2. Alekseyenko, A. A., S. Peng, E. Larschan, A. A. Gorchakov, O. K. Lee, P. Kharchenko, S. D. McGrath, C. I. Wang, E. R. Mardis, P. J. Park, and M. I. Kuroda. 2008. A sequence motif within chromatin entry sites directs MSL establishment on the Drosophila X chromosome. Cell 134:599-609.
3. Clemson, C. M., J. A. McNeil, H. F. Willard, and J. B. Lawrence. 1996. XIST RNA paints the inactive X chromosome at interphase: evidence for a novel RNA involved in nuclear/chromosome structure. J. Cell Biol. 132:259-275.
4. Csankovszki, G., P. McDonel, and B. J. Meyer. 2004. Recruitment and spreading of the Caenorhabditis elegans dosage compensation complex along X chromosomes. Science 303:1182-1185.
5. Dahlsveen, I. K., G. D. Gilfillan, V. I. Shelest, R. Lamm, and P. B. Becker. 2006. Targeting determinants of dosage compensation in Drosophila. PLoS Genet. 2:e5.
6. Demakova, O. V., I. V. Kotlikova, P. R. Gordadze, A. A. Alekseyenko, M. I. Kuroda, and I. F. Zhimulev. 2003. The MSL complex levels are critical for its correct targeting to the chromosomes in Drosophila melanogaster. Chro-mosoma 112:103-115.
7. Duboule, D. 1998. Vertebrate hox gene regulation: clustering and/or colin-earity? Curr. Opin. Genet. Dev. 8:514-518.
8. Duthie, S. M., T. B. Nesterova, E. J. Formstone, A. M. Keohane, B. M. Turner, S. M. Zakian, and N. Brockdorff. 1999. Xist RNA exhibits a banded localization on the inactive X chromosome and is excluded from autosomal material in cis. Hum. Mol. Genet. 8:195-204.
9. Edwards, C. A., and A. C. Ferguson-Smith. 2007. Mechanisms regulating imprinted genes in clusters. Curr. Opin. Cell Biol. 19:281-289.
10. Ercan, S., P. G. Giresi, C. M. Whittle, X. Zhang, R. D. Green, and J. D. Lieb. 2007. X chromosome repression by localization of the Caenorhabditis elegans dosage compensation machinery to sites of transcription initiation. Nat. Genet. 39:403-408.
11. Fagegaltier, D., and B. S. Baker. 2004. X chromosome sites autonomously recruit the dosage compensation complex in Drosophila males. PLoS Biol. 2:e341.
12. Gartler, S. M., and A. D. Riggs. 1983. Mammalian X-chromosome inactiva-tion. Annu. Rev. Genet. 17:155-190.
13. Gierman, H. J., M. H. Indemans, J. Koster, S. Goetze, J. Seppen, D. Geerts, R. van Driel, and R. Versteeg. 2007. Domain-wide regulation of gene expression in the human genome. Genome Res. 17:1286-1295.
14. Gilflllan, G. D., C. Konig, I. K. Dahlsveen, N. Prakoura, T. Straub, R. Lamm, T. Fauth, and P. B. Becker. 2007. Cumulative contributions of weak DNA determinants to targeting the Drosophil a dosage compensation complex. Nucleic Acids Res. 35:3561-3572.
15. Glynn, E. F., P. C. Megee, H. G. Yu, C. Mistrot, E. Unal, D. E. Koshland, J. L. DeRisi, and J. L. Gerton. 2004. Genome-wide mapping of the cohesin complex in the yeast Saccharomyces cerevisiae. PLoS Biol. 2:E259.
16. Heard, E., F. Mongelard, D. Arnaud, and P. Avner. 1999. Xist yeast artificial chromosome transgenes function as X-inactivation centers only in multicopy arrays and not as single copies. Mol. Cell. Biol. 19:3156-3166.
17. Johansson, A. M., P. Stenberg, C. Bernhardsson, and J. Larsson. 2007. Painting of fourth and chromosome-wide regulation of the 4th chromosome in Drosophila melanogaster. EMBO J. 26:2307-2316.
18. Kind, J., and A. Akhtar. 2007. Cotranscriptional recruitment of the dosage compensation complex to X-linked target genes. Genes Dev. 21:2030-2040.
19. Larschan, E., A. A. Alekseyenko, A. A. Gortchakov, S. Peng, B. Li, P. Yang, J. L. Workman, P. J. Park, and M. I. Kuroda. 2007. MSL complex is attracted to genes marked by H3K36 trimethylation using a sequence-independent mechanism. Mol. Cell 28:121-133.
20. Lee, J. T., and R. Jaenisch. 1997. Long-range cis effects of ectopic X-inactivation centres on a mouse autosome. Nature 386:275-279.
21. Lengronne, A., Y. Katou, S. Mori, S. Yokobayashi, G. P. Kelly, T. Itoh, Y. Watanabe, K. Shirahige, and F. Uhlmann. 2004. Cohesin relocation from sites of chromosomal loading to places of convergent transcription. Nature 430:573-578.
22. Lieb, J. D., M. R. Albrecht, P. T. Chuang, and B. J. Meyer. 1998. MIX-1: an essential component of the Caenorhabditis elegans mitotic machinery executes X chromosome dosage compensation. Cell 92:265-277.
23. Lucchesi, J. C, W. G. Kelly, and B. Panning. 2005. Chromatin remodeling in dosage compensation. Annu. Rev. Genet. 39:615-651.
24. Lyon, M. F. 1998. X-chromosome inactivation: a repeat hypothesis. Cyto-genet. Cell Genet. 80:133-137.
25. McDonel, P., J. Jans, B. K. Peterson, and B. J. Meyer. 2006. Clustered DNA motifs mark X chromosomes for repression by a dosage compensation complex. Nature 444:614-618.
26. Mendjan, S., and A. Akhtar. 2007. The right dose for every sex. Chromosoma 116:95-106.
27. Meyer, B. J. 25 June 2005, posting date. X-chromosome dosage compensation. In M. Chalfie and J. Mendel (ed.), WormBook. doi:10.1895/wormbook.1.8.
28. Oh, H., J. R. Bone, and M. I. Kuroda. 2004. Multiple classes of MSL binding sites target dosage compensation to the X chromosome of Drosophila. Curr. Biol. 14:481-487.
29. Payer, B., and J. T. Lee. 2008. X chromosome dosage compensation: how mammals keep the balance. Annu. Rev. Genet. 42:733-772.
30. Popova, B. C, T. Tada, N. Takagi, N. Brockdorff, and T. B. Nesterova. 2006. Attenuated spread of X-inactivation in an X;autosome translocation. Proc. Natl. Sci. USA 103:7706-7711.
31. Riddle, N. C, and S. C. Elgin. 2006. The dot chromosome of Drosophila: insights into chromatin states and their change over evolutionary time. Chromosome Res. 14:405-416.
32. Russell, L. B. 1963. Mammalian X-chromosome action: inactivation limited in spread and region of origin. Science 140:976-978.
33. Sharp, A. J., H. T. Spotswood, D. O. Robinson, B. M. Turner, and P. A. Jacobs. 2002. Molecular and cytogenetic analysis of the spreading of X inactivation in X;autosome translocations. Hum. Mol. Genet. 11:3145-3156.
34. Straub, T., and P. B. Becker. 2007. Dosage compensation: the beginning and end of generalization. Nat. Rev. Genet. 8:47-57.
35. White, W. M., H. F. Willard, D. L. Van Dyke, and D. J. Wolff. 1998. The spreading of X inactivation into autosomal material of an x;autosome trans-location: evidence for a difference between autosomal and X-chromosomal DNA. Am. J. Hum. Genet. 63:20-28.
36. Wutz, A., and J. Gribnau. 2007. X inactivation Xplained. Curr. Opin. Genet. Dev. 17:387-393.