Cumulative contributions of weak DNA determinants to targeting the Drosophila dosage compensation complex

Nucleic Acids Research

Volumn 35, Issue 11, 2007, Pages 3561-3572

  Gilfillan, Gregor D ^a   König, Cornelia ^a   Dahlsveen, Ina K ^a   Prakoura, Nicky ^a   Straub, Tobias ^a   Lamm, Rosemarie ^a   Fauth, Torsten ^a   Becker, Peter B ^a  

^a UNIVERSITY OF MUNICH   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; DROSOPHILA PROTEIN; MALE SPECIFIC LETHAL 2 PROTEIN; UNCLASSIFIED DRUG; DEOXYRIBONUCLEASE I; DNA BINDING PROTEIN; MESSENGER RNA; MSL 2 PROTEIN, DROSOPHILA; MSL-2 PROTEIN, DROSOPHILA; NUCLEAR PROTEIN; TRANSCRIPTION FACTOR;

ANIMAL CELL; ANIMAL TISSUE; ARTICLE; BINDING AFFINITY; BINDING SITE; CONTROLLED STUDY; DNA BINDING MOTIF; DNA SEQUENCE; DROSOPHILA MELANOGASTER; FEMALE; GENE EXPRESSION REGULATION; INSECT GENETICS; MALE; NONHUMAN; PRIORITY JOURNAL; PROTEIN DNA BINDING; ANIMAL; CHEMISTRY; GENETIC TRANSFECTION; GENETICS; METABOLISM; PROTEIN BINDING; TWO HYBRID SYSTEM; X CHROMOSOME;

DROSOPHILA MELANOGASTER;

ANIMALS; BINDING SITES; DEOXYRIBONUCLEASE I; DNA; DNA-BINDING PROTEINS; DOSAGE COMPENSATION, GENETIC; DROSOPHILA MELANOGASTER; DROSOPHILA PROTEINS; FEMALE; MALE; NUCLEAR PROTEINS; PROTEIN BINDING; RNA, MESSENGER; TRANSCRIPTION FACTORS; TRANSFECTION; TWO-HYBRID SYSTEM TECHNIQUES; X CHROMOSOME;

EID: 34547115738     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkm282     Document Type: Article

References (47)

1. Hamada,F.N., Park,P.J., Gordadze,P.R. and Kuroda,M.I. (2005) Global regulation of X chromosomal genes by the MSL complex in Drosophila melanogaster. Genes Dev., 19, 2289-2294.
2. Straub,T., Gilfillan,G.D., Maier,V.K. and Becker,P.B. (2005) The Drosophila MSL complex activates the transcription of target genes. Genes Dev., 19, 2284-2288.
3. Gupta,V., Parisi,M., Sturgill,D., Nuttall,R., Doctolero,M., Dudko,O.K., Malley,J.D., Eastman,P.S. and Oliver,B. (2006) Global analysis of X-chromosome dosage compensation. J. Biol., 5, 3.
4. Gilfillan,G.D., Dahlsveen,I.K. and Becker,P.B. (2004) Lifting a chromosome: Dosage compensation in Drosophila melanogaster. FEBS Lett., 567, 8-14.
5. Cheng,M.K. and Disteche,C.M. (2006) A balancing act between the X chromosome and the autosomes. J. Biol., 5, 2.
6. Larsson,J. and Meller,V.H. (2006) Dosage compensation, the origin and the afterlife of sex chromosomes. Chromosome Res., 14, 417-431.
7. Lucchesi,J.C., Kelly,W.G. and Panning,B. (2005) Chromatin remodeling in dosage compensation. Annu. Rev. Genet., 39, 615-651.
8. Straub,T. and Becker,P.B. (2007) Dosage compensation: The beginning and end of generalisation. Nature Rev. Genet., 8, 47-57.
9. Bone,J.R., Lavender,J., Richman,R., Palmer,M.J., Turner,B.M. and Kuroda,M.I. (1994) Acetylated histone H4 on the male X chromosome is associated with dosage compensation in Drosophila. Genes Dev., 8, 96-104.
10. Akhtar,A. and Becker,P.B. (2000) Activation of transcription through histone H4 acetylation by MOF, an acetyltransferase essential for dosage compensation in Drosophila. Mol. Cell, 5, 367-375.
11. Smith,E.R., Pannuti,A., Gu,W., Steurnagel,A., Cook,R.G., Allis,C.D. and Lucchesi,J.C. (2000) The drosophila MSL complex acetylates histone H4at lysine 16, a chromatin modification linked to dosage compensation. Mol. Cell Biol., 20, 312-318.
12. Jin,Y., Wang,Y., Johansen,J. and Johansen,K.M. (2000) JIL-1, a chromosomal kinase implicated in regulation of chromatin structure, associates with the male specific lethal (MSL) dosage compensation complex. J. Cell Biol., 149, 1005-1010.
13. Lerach,S., Zhang,W., Deng,H., Bao,X., Girton,J., Johansen,J. and Johansen,K.M. (2005) JIL-1 kinase, a member of the male-specific lethal (MSL) complex, is necessary for proper dosage compensation of eye pigmentation in Drosophila: Genesis, 43, 213-215.
14. Furuhashi,H., Nakajima,M. and Hirose,S. (2006) DNA supercoiling factor contributes to dosage compensation in Drosophila. Development, 133, 4475-4483.
15. Mendjan,S., Taipale,M., Kind,J., Holz,H., Gebhardt,P., Schelder,M., Vermeulen,M., Buscaino,A., Duncan,K. et al. (2006) Nuclear pore components are involved in the transcriptional regulation of dosage compensation in Drosophila. Mol. Cell, 21, 811-823.
16. Kelley,R.L., Solovyeva,I., Lyman,L.M., Richman,R., Solovyev,V. and Kuroda,M.I. (1995) Expression of msl-2 causes assembly of dosage compensation regulators on the X chromosomes and female lethality in Drosophila. Cell, 81, 867-877.
17. Lyman,L.M., Copps,K., Rastelli,L., Kelley,R.L. and Kuroda,M.I. (1997) Drosophila male-specific lethal-2 protein: Structure/function analysis and dependence on MSL-1 for chromosome association. Genetics, 147, 1743-1753.
18. Copps,K., Richman,R., Lyman,L.M., Chang,K.A., Rampersad-Ammons,J. and Kuroda,M.I. (1998) Complex formation by the Drosophila MSL proteins: role of the MSL2 RING finger in protein complex assembly. Embo J., 17, 5409-5417.
19. Gu,W., Wei,X., Pannuti,A. and Lucchesi,J.C. (2000) Targeting the chromatin remodeling MSL complex of Drosophila to its sites of action on the X chromosome requires both acetyl transferase and ATPase activities. EMBO J., 19, 5202-5211.
20. Meller,V.H. and Rattner,B.P. (2002) The roX genes encode redundant male-specific lethal transcripts required for targeting of the MSL complex. Embo J., 21, 1084-1091.
21. Alekseyenko,A.A., Larschan,E., Lai,W.R., Park,P.J. and Kuroda,M.I. (2006) High-resolution ChIP-chip analysis reveals that the Drosophila MSL complex selectively identifies active genes on the male X chromosome. Genes Dev., 10, 848-857.
22. Gilfillan,G.D., Straub,T., de Wit,E., Greil,F., Lamm,R., van Steensel,B. and Becker,P.B. (2006) Chromosome-wide gene-specific targeting of the Drosophila dosage compensation complex. Genes Dev., 20, 858-870.
23. Smith,E.R., Allis,C.D. and Lucchesi,J.C. (2001) Linking global histone acetylation to the transcription enhancement of X-chromosomal genes in Drosophila males. J. Biol. Chem., 276, 31483-31486.
24. Kageyama,Y., Mengus,G., Gilfillan,G., Kennedy,H.G., Stuckenholz,C., Kelley,R.L., Becker,P.B. and Kuroda,M.I. (2001) Association and spreading of the Drosophila dosage compensation complex from a discrete roX1 chromatin entry site. Embo J., 20, 2236-2245.
25. Park,Y., Mengus,G., Bai,X., Kageyama,Y., Meller,V.H., Becker,P.B. and Kuroda,M.I. (2003) Sequence-specific targeting of Drosophila roX genes by the MSL dosage compensation complex. Mol. Cell, 11, 977-986.
26. Oh,H., Bone,J.R. and Kuroda,M.I. (2004) Multiple classes of MSL binding sites target dosage compensation to the X chromosome of Drosophila. Curr. Biol., 14, 481-487.
27. Demakova,O.V., Kotlikova,I.V., Gordadze,P.R., Alekseyenko,A.A., Kuroda,M.I. and Zhimulev,I.F. (2003) The MSL complex levels are critical for its correct targeting to the chromosomes in Drosophila melanogaster. Chromosoma, 112, 103-115.
28. Fagegaltier,D. and Baker,B.S. (2004) X chromosome sites autonomously recruit the dosage compensation complex in Drosophila males. PLoS Biol., 2, e341.
29. Dahlsveen,I.K., Gilfillan,G.D., Shelest,V.I., Lamm,R. and Becker,P.B. (2006) Targeting determinants of dosage compensation in Drosophila. PLoS Genet., 2, e5.
30. Straub,T., Dahlsveen,I.K. and Becker,P.B. (2005) Dosage compensation in flies: Mechanism, models, mystery. FEBS Lett., 579, 3258-3263.
31. Kelley,R.L., Meller,V.H., Gordadze,P.R., Roman,G., Davis,R.L. and Kuroda,M.I. (1999) Epigenetic: Spreading of the Drosophila dosage compensation complex from roX RNA genes into flanking chromatin. Cell 98, 513-522.
32. Vogt,S., Schneider,G., Steuernagel,A., Lucchesi,J., Schulze,E., Rudolph,D. and Schmahl,G. (2000) X-ray microscopic studies of the Drosophila dosage compensation complex. J. Struct. Biol., 132 123-132.
33. Church,G.M. and Gilbert,W. (1984) Genomic sequencing. Proc. Natl. Acad. Sci. USA, 81, 1991-1995.
34. Sambrook,J., Fritsch,E.F. and Maniatis,T. (1989) Molecular Cloning - a Laboratory Manual. Cold Spring Harbor Laboratory, Cold Spring Harbor, New York.
35. Lu,Q. and Richardson,B. (2004) DNasel hypersensitivity analysis of chromatin structure. Methods Mol. Biol., 287, 77-86.
36. Oh,H., Bai,X., Park,Y., Bone,J.R. and Kuroda,M.I. (2004) Targeting dosage compensation to the X chromosome of Drosophila males. Cold Spring Harb. Symp. Quant. Biol., 69, 81-88.
37. Kelley,R.L., Wang,J., Bell,L. and Kuroda,M.I. (1997) Sex lethal controls dosage compensation in Drosophila by a non-splicing mechanism. Nature 387, 195-199.
38. Triezenberg,S.J., Kingsbury,R.C. and McKnight,S.L. (1988) Functional dissection of VP16, the trans-activator of herpes simplex virus immediate early gene expression. Genes Dev., 2, 718-729.
39. Cousens,D.J., Greaves,R., Goding,C.R. and O'Hare,P. (1989) The C-terminal 79 amino acids of the herpes simplex virus regulatory protein, Vmw65, efficiently activate transcription in yeast and mammalian cells in chimeric DNA-binding proteins. Embo J., 8 2337-2342.
40. Vidal,M. and Legrain,P. (1999) Yeast forward and reverse 'n'-hybrid systems. Nucleic Acids Res., 27, 919-929.
41. Straub,T., Neumann,M.F., Prestel,M., Kremmer,E., Kaether,C., Haass,C. and Becker,P.B. (2005) Stable chromosomal association of MSL2 defines a dosage-compensated nuclear compartment. Chromosoma, 114, 352-364.
42. Ercan,S., Giresi,P.G., Whittle,C.M., Zhang,X., Green,R.D. and Lieb,J.D. (2007) X chromosome repression by localization of the C. elegans dòsage compensation machinery to sites of transcription initiation. Nature Genet., 349, 402-408.
43. Zuckerkandl,E. and Villet,R. (1988) Generation of high specificity of effect through low-specificity binding of proteins to DNA. FEBS Lett. 231, 291-298.
44. McDonel,P., Jans,J., Peterson,B.K. and Meyer,B.J. (2006) Clustered DNA motifs mark X chromosomes for repression by a dosage compensation complex. Nature, 444, 614-618.
45. Yuan,G.C., Liu,Y.J., Dion,M.F., Slack,M.D., Wu,L.F., Altschuler,S.J. and Rando,O.J. (2005) Genome-scale identification of nucleosome positions in S. cerevisiae. Science, 309, 626-630.
46. Tsukiyama,T., Becker,P.B. and Wu,C. (1994) ATP-dependent nucleosome disruption at a heat-shock promoter mediated by binding of GAGA transcription factor. Nature, 367, 525-532.
47. Xiao,H., Sandaltzopoulos,R., Wang,H., Hamiche,A., Ranallo,R., Lee,K., Fu,D. and Wu,C. (2001) Dual functions of the largest NURF subunit NURF301 in nucleosome sliding and transcription factor interactions. Mol. Cell, 8, 531-543.