-
1
-
-
0032570779
-
Do transmembrane protein superfolds exist?
-
10.1016/S0014-5793(98)00095-7, 9515724
-
Jones DT. Do transmembrane protein superfolds exist?. FEBS Lett 1998, 423:281-285. 10.1016/S0014-5793(98)00095-7, 9515724.
-
(1998)
FEBS Lett
, vol.423
, pp. 281-285
-
-
Jones, D.T.1
-
2
-
-
28444488355
-
Solving the membrane protein folding problem
-
10.1038/nature04395, 16319877
-
Bowie JU. Solving the membrane protein folding problem. Nature 2005, 438(7068):581-589. 10.1038/nature04395, 16319877.
-
(2005)
Nature
, vol.438
, Issue.7068
, pp. 581-589
-
-
Bowie, J.U.1
-
3
-
-
34249683488
-
Membrane Protein Structure: Prediction vs Reality
-
10.1146/annurev.biochem.76.052705.163539, 17579561
-
Elofsson A, vonHeijne G. Membrane Protein Structure: Prediction vs Reality. Annu Rev Biochem 2007, 76:125-140. 10.1146/annurev.biochem.76.052705.163539, 17579561.
-
(2007)
Annu Rev Biochem
, vol.76
, pp. 125-140
-
-
Elofsson, A.1
vonHeijne, G.2
-
4
-
-
0037494099
-
The crystallographic model of rhodopsin and its use in studies of other G protein-coupled receptors
-
10.1146/annurev.biophys.32.110601.142520, 1351250, 12574068
-
Filipek S, Teller DC, Palczewski K, Stenkamp R. The crystallographic model of rhodopsin and its use in studies of other G protein-coupled receptors. Annu Rev Biophys Biomol Struct 2003, 32:375-397. 10.1146/annurev.biophys.32.110601.142520, 1351250, 12574068.
-
(2003)
Annu Rev Biophys Biomol Struct
, vol.32
, pp. 375-397
-
-
Filipek, S.1
Teller, D.C.2
Palczewski, K.3
Stenkamp, R.4
-
5
-
-
0037452868
-
Sequence analyses of G-protein coupled receptors: similarities to rhodopsin
-
10.1021/bi027224+, 1435692, 12627940
-
Mirzadegan T, Benko G, Filipek S, Palczewski K. Sequence analyses of G-protein coupled receptors: similarities to rhodopsin. Biochemistry 2003, 42(10):2759-2767. 10.1021/bi027224+, 1435692, 12627940.
-
(2003)
Biochemistry
, vol.42
, Issue.10
, pp. 2759-2767
-
-
Mirzadegan, T.1
Benko, G.2
Filipek, S.3
Palczewski, K.4
-
6
-
-
2442548750
-
Identification of core amino acids stabilizing rhodopsin
-
10.1073/pnas.0401429101, 409904, 15123809
-
Rader AJ, Anderson G, Isin B, Khorana HG, Bahar I, Klein-Seetharaman J. Identification of core amino acids stabilizing rhodopsin. Proc Natl Acad Sci USA 2004, 101(19):7246-7251. 10.1073/pnas.0401429101, 409904, 15123809.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, Issue.19
, pp. 7246-7251
-
-
Rader, A.J.1
Anderson, G.2
Isin, B.3
Khorana, H.G.4
Bahar, I.5
Klein-Seetharaman, J.6
-
7
-
-
0347079798
-
Disease-Related Misassembly of Membrane Proteins
-
Sanders C, Myers J. Disease-Related Misassembly of Membrane Proteins. Annu Rev Biophys Biomol Struct 2004, 8(33):25-51.
-
(2004)
Annu Rev Biophys Biomol Struct
, vol.8
, Issue.33
, pp. 25-51
-
-
Sanders, C.1
Myers, J.2
-
8
-
-
0030855217
-
Three-dimensional structures and contexts associated with recurrent amino acid sequence patterns
-
10.1002/pro.5560060723, 2143736, 9232660
-
Han K, Bystroff C, Baker D. Three-dimensional structures and contexts associated with recurrent amino acid sequence patterns. Protein Sci 1997, 6:1587-90. 10.1002/pro.5560060723, 2143736, 9232660.
-
(1997)
Protein Sci
, vol.6
, pp. 1587-1590
-
-
Han, K.1
Bystroff, C.2
Baker, D.3
-
9
-
-
0036293842
-
A novel main-chain anion-binding site in proteins: the nest. A particular combination of phi, psi values in successive residues give rise to anion-binding sites that occur commonly and are found often at functionally important regions
-
10.1006/jmbi.2001.5227, 11779237
-
Watson J, Milne-White J. A novel main-chain anion-binding site in proteins: the nest. A particular combination of phi, psi values in successive residues give rise to anion-binding sites that occur commonly and are found often at functionally important regions. J Mol Biol 2002, 315:171-182. 10.1006/jmbi.2001.5227, 11779237.
-
(2002)
J Mol Biol
, vol.315
, pp. 171-182
-
-
Watson, J.1
Milne-White, J.2
-
10
-
-
0032555696
-
Prediction of Local Structure in Proteins Using a Library of Sequence-Structure Motifs
-
10.1006/jmbi.1998.1943, 9698570
-
Bystroff C, Baker D. Prediction of Local Structure in Proteins Using a Library of Sequence-Structure Motifs. J Mol Biol 1998, (281):565-577. 10.1006/jmbi.1998.1943, 9698570.
-
(1998)
J Mol Biol
, Issue.281
, pp. 565-577
-
-
Bystroff, C.1
Baker, D.2
-
11
-
-
0036406112
-
Small Libraries of Protein Fragments Model Native Protein Structures Accurately
-
Kolodny P, Koehl P, Guibas L, Levitt M. Small Libraries of Protein Fragments Model Native Protein Structures Accurately. J Mol Biol 2002, 223:297-307.
-
(2002)
J Mol Biol
, vol.223
, pp. 297-307
-
-
Kolodny, P.1
Koehl, P.2
Guibas, L.3
Levitt, M.4
-
12
-
-
38549158429
-
MegaMotifBase: a database of structural motifs in protein families and superfamilies
-
10.1093/nar/gkm794, 2238926, 17933773
-
Pugalenthi G, Suganthan PN, Sowdhamini R, Chakrabarti S. MegaMotifBase: a database of structural motifs in protein families and superfamilies. Nucleic Acids Res 2008, 36:D218-21. 10.1093/nar/gkm794, 2238926, 17933773.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Pugalenthi, G.1
Suganthan, P.N.2
Sowdhamini, R.3
Chakrabarti, S.4
-
13
-
-
9144231249
-
E-MSD: an integrated data resource for bioinformatics
-
10.1093/nar/gkh078, 308812, 14681397
-
Golovin A, Oldfield TJ, Tate JG, Velankar S, Barton GJ, Boutselakis H, Dimitropoulos D, Fillon J, Hussain A, Ionides JMC, John M, Keller PA, Krissinel E, McNeil P, Naim A, Newman R, Pajon A, Pineda J, Rachedi A, Copeland J, Sitnov A, Sobhany S, Suarez-Uruena A, Swaminathan GJ, Tagari M, Tromm S, Vranken W, Henrick K. E-MSD: an integrated data resource for bioinformatics. Nucleic Acids Res 2004, 32:D211-6. 10.1093/nar/gkh078, 308812, 14681397.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Golovin, A.1
Oldfield, T.J.2
Tate, J.G.3
Velankar, S.4
Barton, G.J.5
Boutselakis, H.6
Dimitropoulos, D.7
Fillon, J.8
Hussain, A.9
Ionides, J.M.C.10
John, M.11
Keller, P.A.12
Krissinel, E.13
McNeil, P.14
Naim, A.15
Newman, R.16
Pajon, A.17
Pineda, J.18
Rachedi, A.19
Copeland, J.20
Sitnov, A.21
Sobhany, S.22
Suarez-Uruena, A.23
Swaminathan, G.J.24
Tagari, M.25
Tromm, S.26
Vranken, W.27
Henrick, K.28
more..
-
14
-
-
0001290045
-
PROSITE: A documented database using patterns and profiles as motif descriptors
-
10.1093/bib/3.3.265, 12230035
-
Sigrist C, Cerutti L, Hulo N, Gattiker A, Falquet L, Pagni M, Bairoch A, Bucher F. PROSITE: A documented database using patterns and profiles as motif descriptors. Brief Bioinform 2002, 3(3):265-274. 10.1093/bib/3.3.265, 12230035.
-
(2002)
Brief Bioinform
, vol.3
, Issue.3
, pp. 265-274
-
-
Sigrist, C.1
Cerutti, L.2
Hulo, N.3
Gattiker, A.4
Falquet, L.5
Pagni, M.6
Bairoch, A.7
Bucher, F.8
-
15
-
-
22544441094
-
ProFunc: a server for predicting protein function from 3D structure
-
Web Server, 10.1093/nar/gki414, 1160175, 15980588
-
Laskowski R, Watson J, Thornton J. ProFunc: a server for predicting protein function from 3D structure. Nucleic Acids Res 2005, (33 Web Server):W89-W93. 10.1093/nar/gki414, 1160175, 15980588.
-
(2005)
Nucleic Acids Res
, Issue.33
-
-
Laskowski, R.1
Watson, J.2
Thornton, J.3
-
16
-
-
0031917176
-
Helix capping
-
2143812, 9514257
-
Aurora R, Rose G. Helix capping. Protein Sci 1998, 7:21-38. 2143812, 9514257.
-
(1998)
Protein Sci
, vol.7
, pp. 21-38
-
-
Aurora, R.1
Rose, G.2
-
17
-
-
0033571213
-
Inducible nitric oxide synthase: role of the N-terminal beta-hairpin hook and pterin-binding segment in dimerization and tetrahydrobiopterin interaction
-
10.1093/emboj/18.22.6260, 1171689, 10562538
-
Ghosh DK, Crane BR, Ghosh S, Wolan D, Gachhui R, Crooks C, Presta A, Tainer JA, Getzoff ED, Stuehr DJ. Inducible nitric oxide synthase: role of the N-terminal beta-hairpin hook and pterin-binding segment in dimerization and tetrahydrobiopterin interaction. EMBO J 1999, 18:6260-6270. 10.1093/emboj/18.22.6260, 1171689, 10562538.
-
(1999)
EMBO J
, vol.18
, pp. 6260-6270
-
-
Ghosh, D.K.1
Crane, B.R.2
Ghosh, S.3
Wolan, D.4
Gachhui, R.5
Crooks, C.6
Presta, A.7
Tainer, J.A.8
Getzoff, E.D.9
Stuehr, D.J.10
-
18
-
-
33746361201
-
Structural Classification and Prediction of Reentrant Regions in alpha-Helical Transmembrane Proteins: application to Complete Genomes
-
10.1016/j.jmb.2006.06.037, 16860824
-
Viklund H, Granseth E, Elofsson A. Structural Classification and Prediction of Reentrant Regions in alpha-Helical Transmembrane Proteins: application to Complete Genomes. J Mol Biol 2006, 361:591-603. 10.1016/j.jmb.2006.06.037, 16860824.
-
(2006)
J Mol Biol
, vol.361
, pp. 591-603
-
-
Viklund, H.1
Granseth, E.2
Elofsson, A.3
-
19
-
-
12344330612
-
A study of the membrane-water interface region of membrane proteins
-
10.1016/j.jmb.2004.11.036, 15663952
-
Granseth E, von Heijne G, Elofsson A. A study of the membrane-water interface region of membrane proteins. J Mol Biol 2005, 346:377-385. 10.1016/j.jmb.2004.11.036, 15663952.
-
(2005)
J Mol Biol
, vol.346
, pp. 377-385
-
-
Granseth, E.1
von Heijne, G.2
Elofsson, A.3
-
20
-
-
33748791763
-
Helix-packing motifs in membrane proteins
-
10.1073/pnas.0605878103, 1564267, 16954199
-
Walters RFS, DeGrado WF. Helix-packing motifs in membrane proteins. Proc Natl Acad Sci USA 2006, 103:13658-13663. 10.1073/pnas.0605878103, 1564267, 16954199.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 13658-13663
-
-
Walters, R.F.S.1
DeGrado, W.F.2
-
21
-
-
0742288411
-
The evolution of transmembrane helix kinks and the structural diverstity of G protein-coupled receptors
-
Yohannan S, Faham S, Yang D, Whitelegge P, Bowie J. The evolution of transmembrane helix kinks and the structural diverstity of G protein-coupled receptors. Proc Natl Acad Sci USA 2003, 101(4):959-963.
-
(2003)
Proc Natl Acad Sci USA
, vol.101
, Issue.4
, pp. 959-963
-
-
Yohannan, S.1
Faham, S.2
Yang, D.3
Whitelegge, P.4
Bowie, J.5
-
22
-
-
45449101527
-
TOPDOM: database of domains and motifs with conservative location in transmembrane proteins
-
10.1093/bioinformatics/btn202, 2427164, 18434342
-
Tusnády GE, Kalmár L, Hegyi H, Tompa P, Simon I. TOPDOM: database of domains and motifs with conservative location in transmembrane proteins. Bioinformatics 2008, 24:1469-1470. 10.1093/bioinformatics/btn202, 2427164, 18434342.
-
(2008)
Bioinformatics
, vol.24
, pp. 1469-1470
-
-
Tusnády, G.E.1
Kalmár, L.2
Hegyi, H.3
Tompa, P.4
Simon, I.5
-
23
-
-
1842635567
-
Clustering of protein structural fragments reveals modular building block approach of nature
-
10.1016/j.jmb.2004.02.047, 15081817
-
Tendulkar AV, Joshi AA, Sohoni MA, Wangikar PP. Clustering of protein structural fragments reveals modular building block approach of nature. J Mol Biol 2004, 338:611-629. 10.1016/j.jmb.2004.02.047, 15081817.
-
(2004)
J Mol Biol
, vol.338
, pp. 611-629
-
-
Tendulkar, A.V.1
Joshi, A.A.2
Sohoni, M.A.3
Wangikar, P.P.4
-
24
-
-
33744456230
-
Finding motifs in protein secondary structure for use in function prediction
-
10.1089/cmb.2006.13.719, 16706721
-
Ferré S, King RD. Finding motifs in protein secondary structure for use in function prediction. J Comput Biol 2006, 13:719-731. 10.1089/cmb.2006.13.719, 16706721.
-
(2006)
J Comput Biol
, vol.13
, pp. 719-731
-
-
Ferré, S.1
King, R.D.2
-
25
-
-
33748684383
-
Identification of function-associated loop motifs and application to protein function prediction
-
10.1093/bioinformatics/btl382, 16870939
-
Espadaler J, Querol E, Aviles FX, Oliva B. Identification of function-associated loop motifs and application to protein function prediction. Bioinformatics 2006, 22:2237-2243. 10.1093/bioinformatics/btl382, 16870939.
-
(2006)
Bioinformatics
, vol.22
, pp. 2237-2243
-
-
Espadaler, J.1
Querol, E.2
Aviles, F.X.3
Oliva, B.4
-
26
-
-
45549109966
-
Functionally important segments in proteins dissected using Gene Ontology and geometric clustering of peptide fragments
-
Karuppasamy M, Pal D, Suryanarayanarao R, Brener N, Iyengar S, Seetharaman G. Functionally important segments in proteins dissected using Gene Ontology and geometric clustering of peptide fragments. Genome Biol 2008, 1(9):R52.
-
(2008)
Genome Biol
, vol.1
, Issue.9
-
-
Karuppasamy, M.1
Pal, D.2
Suryanarayanarao, R.3
Brener, N.4
Iyengar, S.5
Seetharaman, G.6
-
27
-
-
0037122805
-
X-ray structure of a ClC chloride channel at 3.0 A reveals the molecular basis of anion selectivity
-
10.1038/415287a, 11796999
-
Dutzler R, Campbell E, Cadene M, Chait B, MacKinnon R. X-ray structure of a ClC chloride channel at 3.0 A reveals the molecular basis of anion selectivity. Nature 2002, 415(6869):287-94. 10.1038/415287a, 11796999.
-
(2002)
Nature
, vol.415
, Issue.6869
, pp. 287-294
-
-
Dutzler, R.1
Campbell, E.2
Cadene, M.3
Chait, B.4
MacKinnon, R.5
-
28
-
-
1142291714
-
Mechanism of anionic conduction across ClC
-
10.1016/S0006-3495(04)74159-4, 1303931, 14747319
-
Cohen J, Schulten K. Mechanism of anionic conduction across ClC. Biophys J 2004, 86(2):836-45. 10.1016/S0006-3495(04)74159-4, 1303931, 14747319.
-
(2004)
Biophys J
, vol.86
, Issue.2
, pp. 836-845
-
-
Cohen, J.1
Schulten, K.2
-
29
-
-
33644876493
-
SCOPPI: a structural classification of protein-rptoein interfaces
-
Database, 10.1093/nar/gkj099, 1347461, 16381874
-
Winter C, Henschel A, Kim W, Schroeder M. SCOPPI: a structural classification of protein-rptoein interfaces. Nucleic Acids Res 2006, (34 Database):D310-D314. 10.1093/nar/gkj099, 1347461, 16381874.
-
(2006)
Nucleic Acids Res
, Issue.34
-
-
Winter, C.1
Henschel, A.2
Kim, W.3
Schroeder, M.4
-
30
-
-
0035371783
-
A novel scenario for the evolution of haem-copper oxygen reductases
-
10.1016/S0005-2728(01)00169-4, 11334784
-
Pereira MM, Santana M, Teixeira M. A novel scenario for the evolution of haem-copper oxygen reductases. Biochim Biophys Acta 2001, 1505(2-3):185-208. 10.1016/S0005-2728(01)00169-4, 11334784.
-
(2001)
Biochim Biophys Acta
, vol.1505
, Issue.2-3
, pp. 185-208
-
-
Pereira, M.M.1
Santana, M.2
Teixeira, M.3
-
31
-
-
29244472486
-
An elementary reaction step of the proton pump is revealed by mutation of tryptophan-164 to phenylalanine in cytochrome c oxidase from Paracoccus denitrificans
-
10.1021/bi0511336, 16342941
-
Ribacka C, Verkhovsky MI, Belevich I, Bloch DA, Puustinen A, Wikström M. An elementary reaction step of the proton pump is revealed by mutation of tryptophan-164 to phenylalanine in cytochrome c oxidase from Paracoccus denitrificans. Biochemistry 2005, 44(50):16502-16512. 10.1021/bi0511336, 16342941.
-
(2005)
Biochemistry
, vol.44
, Issue.50
, pp. 16502-16512
-
-
Ribacka, C.1
Verkhovsky, M.I.2
Belevich, I.3
Bloch, D.A.4
Puustinen, A.5
Wikström, M.6
-
32
-
-
33846505059
-
Coupling substrate and ion binding to extracellular gate of a sodium-dependent aspartate transporter
-
advanced online publication, 10.1038/nature05455, 17230192
-
Boudker O, Ryan R, Yernool D, Shimamoto K, Gouaux E. Coupling substrate and ion binding to extracellular gate of a sodium-dependent aspartate transporter. Nature 2007, 387-393. advanced online publication, 10.1038/nature05455, 17230192.
-
(2007)
Nature
, pp. 387-393
-
-
Boudker, O.1
Ryan, R.2
Yernool, D.3
Shimamoto, K.4
Gouaux, E.5
-
33
-
-
33750886311
-
Crystal structure of a rhomboid family intramembrane protease
-
advanced online publication, 10.1038/nature05255, 17051161
-
Wang Y, Zhang Y, Ha Y. Crystal structure of a rhomboid family intramembrane protease. Nature 2006, 179-180. advanced online publication, 10.1038/nature05255, 17051161.
-
(2006)
Nature
, pp. 179-180
-
-
Wang, Y.1
Zhang, Y.2
Ha, Y.3
-
34
-
-
10244252813
-
Transmembrane proteins in the Protein Data Bank: identification and classification
-
10.1093/bioinformatics/bth340, 15180935
-
Tusnady G, Dosztanyi Z, Simon I. Transmembrane proteins in the Protein Data Bank: identification and classification. Bioinformatics 2004, 20(17):2964-2972. 10.1093/bioinformatics/bth340, 15180935.
-
(2004)
Bioinformatics
, vol.20
, Issue.17
, pp. 2964-2972
-
-
Tusnady, G.1
Dosztanyi, Z.2
Simon, I.3
-
35
-
-
4444221565
-
UCSF Chimera-a visualization system for exploratory research and analysis
-
10.1002/jcc.20084, 15264254
-
Pettersen E, Goddard T, Huang C, Couch G, Greenblatt D, Meng E, Ferrin T. UCSF Chimera-a visualization system for exploratory research and analysis. J Comput Chem 2004, 25(13):1605-12. 10.1002/jcc.20084, 15264254.
-
(2004)
J Comput Chem
, vol.25
, Issue.13
, pp. 1605-1612
-
-
Pettersen, E.1
Goddard, T.2
Huang, C.3
Couch, G.4
Greenblatt, D.5
Meng, E.6
Ferrin, T.7
-
36
-
-
0033950315
-
Understanding membrane protein structure by design
-
10.1038/72454, 10655604
-
Bowie JU. Understanding membrane protein structure by design. Nature Structural Biology 2000, 7:91-94. 10.1038/72454, 10655604.
-
(2000)
Nature Structural Biology
, vol.7
, pp. 91-94
-
-
Bowie, J.U.1
-
37
-
-
0024420202
-
Comparing Short Protein Substructures by a Method Based on Backbone Torsion Angles
-
10.1002/prot.340060206, 2622903
-
Karpen M, de Haseth P, Neet K. Comparing Short Protein Substructures by a Method Based on Backbone Torsion Angles. Proteins 1989, 6:155-167. 10.1002/prot.340060206, 2622903.
-
(1989)
Proteins
, vol.6
, pp. 155-167
-
-
Karpen, M.1
de Haseth, P.2
Neet, K.3
-
38
-
-
0034069495
-
Gene ontology: tool for the unification of biology. The Gene Ontology Consortium
-
10.1038/75556, 10802651
-
Ashburner M, Ball C, Blake J, Botstein D, Butler H, Cherry J, Davis A, Dolinski K, Dwight S, Eppig J, Harris M, Hill D, Issel-Tarver L, Kasarskis A, Lewis S, Matese J, Richardson J, Ringwald M, Rubin G, Sherlock G. Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat Genet 2000, 25:25-9. 10.1038/75556, 10802651.
-
(2000)
Nat Genet
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.2
Blake, J.3
Botstein, D.4
Butler, H.5
Cherry, J.6
Davis, A.7
Dolinski, K.8
Dwight, S.9
Eppig, J.10
Harris, M.11
Hill, D.12
Issel-Tarver, L.13
Kasarskis, A.14
Lewis, S.15
Matese, J.16
Richardson, J.17
Ringwald, M.18
Rubin, G.19
Sherlock, G.20
more..
-
39
-
-
0033954256
-
The Protein Data Bank
-
10.1093/nar/28.1.235, 102472, 10592235
-
Berman H, Westbrook J, Feng Z, Gilliland G, Bhat T, Weissig H, Shindyalov I, Bourne P. The Protein Data Bank. Nucleic Acids Res 2000, 28:235-42. 10.1093/nar/28.1.235, 102472, 10592235.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 235-242
-
-
Berman, H.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.5
Weissig, H.6
Shindyalov, I.7
Bourne, P.8
-
40
-
-
13444273448
-
The Universal Protein Resource (UniProt)
-
Database, 540024, 15608167
-
Bairoch A, Apweiler R, Wu C, Barker W, Boeckmann B, Ferro S, Gasteiger E, Huang H, Lopez R, Magrane M, Martin M, Natale D, O'Donovan C, Redaschi N, Yeh L. The Universal Protein Resource (UniProt). Nucleic Acids Res 2005, (33 Database):D154-9. 540024, 15608167.
-
(2005)
Nucleic Acids Res
, Issue.33
-
-
Bairoch, A.1
Apweiler, R.2
Wu, C.3
Barker, W.4
Boeckmann, B.5
Ferro, S.6
Gasteiger, E.7
Huang, H.8
Lopez, R.9
Magrane, M.10
Martin, M.11
Natale, D.12
O'Donovan, C.13
Redaschi, N.14
Yeh, L.15
-
41
-
-
33644876022
-
The PROSITE database
-
Database, 10.1093/nar/gkj063, 1347426, 16381852
-
Hulo N, Bairoch A, Bulliard V, Cerutti L, De CE, Langendijk-Genevaux P, Pagni M, Sigrist C. The PROSITE database. Nucleic Acids Res 2006, (34 Database):D227-30. 10.1093/nar/gkj063, 1347426, 16381852.
-
(2006)
Nucleic Acids Res
, Issue.34
-
-
Hulo, N.1
Bairoch, A.2
Bulliard, V.3
Cerutti, L.4
De, C.E.5
Langendijk-Genevaux, P.6
Pagni, M.7
Sigrist, C.8
-
43
-
-
0037333304
-
Membrane proteins: the 'Wild West' of structural biology
-
10.1016/S0968-0004(03)00026-4, 12633993
-
Torres J, Stevens TJ, Samsó M. Membrane proteins: the 'Wild West' of structural biology. Trends in biochemical sciences 2003, 28:137-144. 10.1016/S0968-0004(03)00026-4, 12633993.
-
(2003)
Trends in biochemical sciences
, vol.28
, pp. 137-144
-
-
Torres, J.1
Stevens, T.J.2
Samsó, M.3
-
44
-
-
66249121383
-
Biophysical dissection of membrane proteins
-
10.1038/nature08142, 19458709
-
White SH. Biophysical dissection of membrane proteins. Nature 2009, 459:344-346. 10.1038/nature08142, 19458709.
-
(2009)
Nature
, vol.459
, pp. 344-346
-
-
White, S.H.1
-
45
-
-
38549146894
-
The Pfam protein families database
-
10.1093/nar/gkm960, 2238907, 18039703
-
Finn RD, Tate J, Mistry J, Coggill PC, Sammut SJ, Hotz HR, Ceric G, Forslund K, Eddy SR, Sonnhammer ELL, Bateman A. The Pfam protein families database. Nucleic Acids Res 2007, 36:D281-8. 10.1093/nar/gkm960, 2238907, 18039703.
-
(2007)
Nucleic Acids Res
, vol.36
-
-
Finn, R.D.1
Tate, J.2
Mistry, J.3
Coggill, P.C.4
Sammut, S.J.5
Hotz, H.R.6
Ceric, G.7
Forslund, K.8
Eddy, S.R.9
Sonnhammer, E.L.L.10
Bateman, A.11
-
46
-
-
66549120787
-
Is protein classification necessary?: Toward alternative approaches to function annotation
-
10.1016/j.sbi.2009.02.001, 2745633, 19269161
-
Petrey D, Honig B. Is protein classification necessary?: Toward alternative approaches to function annotation. Curr Opin Struct Biol 2009, 19:363-368. 10.1016/j.sbi.2009.02.001, 2745633, 19269161.
-
(2009)
Curr Opin Struct Biol
, vol.19
, pp. 363-368
-
-
Petrey, D.1
Honig, B.2
-
47
-
-
33344473968
-
Imaging and detecting molecular interactions of single transmembrane proteins
-
10.1016/j.neurobiolaging.2005.03.031, 16253393
-
Janovjak H, Kedrov A, Cisneros D, Sapra K, Struckmeier J, Mulle D. Imaging and detecting molecular interactions of single transmembrane proteins. Neurobiol Aging 2006, 27:546-561. 10.1016/j.neurobiolaging.2005.03.031, 16253393.
-
(2006)
Neurobiol Aging
, vol.27
, pp. 546-561
-
-
Janovjak, H.1
Kedrov, A.2
Cisneros, D.3
Sapra, K.4
Struckmeier, J.5
Mulle, D.6
-
48
-
-
33745634395
-
Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences
-
10.1093/bioinformatics/btl158, 16731699
-
Li W, Godzik A. Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics 2006, 22(13):1658-1659. 10.1093/bioinformatics/btl158, 16731699.
-
(2006)
Bioinformatics
, vol.22
, Issue.13
, pp. 1658-1659
-
-
Li, W.1
Godzik, A.2
-
49
-
-
0030333470
-
Three-dimensional hydrogen-bond geometry and probability information from a crystal survey
-
Mills J, Dean P. Three-dimensional hydrogen-bond geometry and probability information from a crystal survey. J Comput-Aided Mol Des 1996, 22:607.
-
(1996)
J Comput-Aided Mol Des
, vol.22
, pp. 607
-
-
Mills, J.1
Dean, P.2
-
50
-
-
13444280419
-
PDBTM: selection and membrane localization of transmembrane proteins in the protein data bank
-
Database, 539956, 15608195
-
Tusnay G, Dosztanyi Z, Simon I. PDBTM: selection and membrane localization of transmembrane proteins in the protein data bank. Nucleic Acids Res 2005, (33 Database):D275-D278. 539956, 15608195.
-
(2005)
Nucleic Acids Res
, Issue.33
-
-
Tusnay, G.1
Dosztanyi, Z.2
Simon, I.3
-
51
-
-
38549172064
-
TOPDB: topology data bank of transmembrane proteins
-
10.1093/nar/gkm751, 2238857, 17921502
-
Tusnády GE, Kalmár L, Simon I. TOPDB: topology data bank of transmembrane proteins. Nucleic Acids Res 2008, 36:D234-9. 10.1093/nar/gkm751, 2238857, 17921502.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Tusnády, G.E.1
Kalmár, L.2
Simon, I.3
-
52
-
-
0029159799
-
Finding flexible patterns in unaligned protein sequences
-
10.1002/pro.5560040817, 2143188, 8520485
-
Jonassen I, Collins J, Higgins D. Finding flexible patterns in unaligned protein sequences. Protein Sci 1995, 4(8):1587-1595. 10.1002/pro.5560040817, 2143188, 8520485.
-
(1995)
Protein Sci
, vol.4
, Issue.8
, pp. 1587-1595
-
-
Jonassen, I.1
Collins, J.2
Higgins, D.3
-
53
-
-
28444469788
-
Mapping PDB chains to UniProtKB entries
-
10.1093/bioinformatics/bti694, 16188924
-
Martin A. Mapping PDB chains to UniProtKB entries. Bioinformatics 2005, 21(23):4297-4301. 10.1093/bioinformatics/bti694, 16188924.
-
(2005)
Bioinformatics
, vol.21
, Issue.23
, pp. 4297-4301
-
-
Martin, A.1
-
54
-
-
9144252016
-
The Gene Ontology Annotation (GOA) Database: sharin knowledge in Uniprot with Gene Ontology
-
Database, 10.1093/nar/gkh021, 308756, 14681408
-
Camon E, Magrane M, Barrel D, Lee V, Dimmer E, Maslen J, Binns D, Harte N, Lopez R, Apweiler R. The Gene Ontology Annotation (GOA) Database: sharin knowledge in Uniprot with Gene Ontology. Nucleic Acids Res 2004, (32 Database):D262-D266. 10.1093/nar/gkh021, 308756, 14681408.
-
(2004)
Nucleic Acids Res
, Issue.32
-
-
Camon, E.1
Magrane, M.2
Barrel, D.3
Lee, V.4
Dimmer, E.5
Maslen, J.6
Binns, D.7
Harte, N.8
Lopez, R.9
Apweiler, R.10
-
55
-
-
0034711958
-
Statistical analysis of Amino Acid Patterns in Transmembrane Helices: The GxxxG Motif Occurs Frequently and in association with beta-branched Residues at Neighboring Positions
-
10.1006/jmbi.1999.3488, 10677292
-
Senes A, Gerstein M, Engleman DM. Statistical analysis of Amino Acid Patterns in Transmembrane Helices: The GxxxG Motif Occurs Frequently and in association with beta-branched Residues at Neighboring Positions. J Mol Biol 2000, 296(3):921-936. 10.1006/jmbi.1999.3488, 10677292.
-
(2000)
J Mol Biol
, vol.296
, Issue.3
, pp. 921-936
-
-
Senes, A.1
Gerstein, M.2
Engleman, D.M.3
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