-
1
-
-
53049086149
-
Engineering hyperthermostability into a GH11 xylanase is mediated by subtle changes to protein structure
-
Dumon C, Varvak A, Wall MA, Flint JE, Lewis RJ, Lakey JH, Morland C, Luginbuhl P, Healey S, Todaro T, DeSantis G, Sun M, Parra-Gessert L, Tan XQ, Weiner DP, Gilbert HJ (2008). Engineering hyperthermostability into a GH11 xylanase is mediated by subtle changes to protein structure. J. Biol. Chem. 283: 22557-22564.
-
(2008)
J. Biol. Chem
, vol.283
, pp. 22557-22564
-
-
Dumon, C.1
Varvak, A.2
Wall, M.A.3
Flint, J.E.4
Lewis, R.J.5
Lakey, J.H.6
Morland, C.7
Luginbuhl, P.8
Healey, S.9
Todaro, T.10
DeSantis, G.11
Sun, M.12
Parra-Gessert, L.13
Tan, X.Q.14
Weiner, D.P.15
Gilbert, H.J.16
-
2
-
-
0842281285
-
A de novo designed Nterminal disulphide bridge stabilizes the Trichoderma reesei endo-1, 4-beta-xylanase II
-
Fenel F, Leisola M, Janis J, Turunen O (2004). A de novo designed Nterminal disulphide bridge stabilizes the Trichoderma reesei endo-1, 4-beta-xylanase II. J. Biotechnol. 108: 137-143.
-
(2004)
J. Biotechnol
, vol.108
, pp. 137-143
-
-
Fenel, F.1
Leisola, M.2
Janis, J.3
Turunen, O.4
-
3
-
-
0024520745
-
Site-directed mutagenesis by overlap extension using the polymerase chain reaction
-
Ho SN, Hunt HD, Horton RM, Pullen JK, Pease LR (1989). Site-directed mutagenesis by overlap extension using the polymerase chain reaction. Gene, 77: 51-59.
-
(1989)
Gene
, vol.77
, pp. 51-59
-
-
Ho, S.N.1
Hunt, H.D.2
Horton, R.M.3
Pullen, J.K.4
Pease, L.R.5
-
4
-
-
33846219593
-
Engineering a de novo internal disulfide bridge to improve the thermal stability of xylanase from Bacillus stearothermophilus No. 236
-
Jeong MY, Kim S, Yun CW, Choi YJ, Cho SG (2007). Engineering a de novo internal disulfide bridge to improve the thermal stability of xylanase from Bacillus stearothermophilus No. 236. J. Biotechnol. 127: 300-309.
-
(2007)
J. Biotechnol
, vol.127
, pp. 300-309
-
-
Jeong, M.Y.1
Kim, S.2
Yun, C.W.3
Choi, Y.J.4
Cho, S.G.5
-
5
-
-
0035964164
-
Dissecting the electrostatic interactions and pH-dependent activity of a family 11 glycosidase
-
Joshi MD, Sidhu G, Nielsen JE, Brayer GD, Withers SG, McIntosh LP (2001). Dissecting the electrostatic interactions and pH-dependent activity of a family 11 glycosidase. Biochemistry, 40: 10115-10139.
-
(2001)
Biochemistry
, vol.40
, pp. 10115-10139
-
-
Joshi, M.D.1
Sidhu, G.2
Nielsen, J.E.3
Brayer, G.D.4
Withers, S.G.5
McIntosh, L.P.6
-
6
-
-
0034716940
-
Hydrogen bonding and catalysis: A novel explanation for how a single amino acid substitution can change the pH optimum of a glycosidase
-
Joshi MD, Sidhu G, Pot I, Brayer GD, Withers SG, McIntosh LP (2000). Hydrogen bonding and catalysis: a novel explanation for how a single amino acid substitution can change the pH optimum of a glycosidase. J. Mol. Biol. 299: 255-279.
-
(2000)
J. Mol. Biol
, vol.299
, pp. 255-279
-
-
Joshi, M.D.1
Sidhu, G.2
Pot, I.3
Brayer, G.D.4
Withers, S.G.5
McIntosh, L.P.6
-
7
-
-
0026526263
-
Thermostabilization of Escherichia coli ribonuclease HI by replacing left-handed helical Lys95 with Gly or Asn
-
Kimura S, Kanaya S, Nakamura H (1992). Thermostabilization of Escherichia coli ribonuclease HI by replacing left-handed helical Lys95 with Gly or Asn. J. Biol. Chem. 267: 22014-22017.
-
(1992)
J. Biol. Chem
, vol.267
, pp. 22014-22017
-
-
Kimura, S.1
Kanaya, S.2
Nakamura, H.3
-
8
-
-
0030592470
-
Three-dimensional structure of Endo-1,4-beta-xylanase I from Aspergillus niger: Molecular basis for its low pH optimum
-
Krengel U, Dijkstra BW (1996). Three-dimensional structure of Endo-1,4-beta-xylanase I from Aspergillus niger: molecular basis for its low pH optimum. J. Mol. Biol. 263: 70-78.
-
(1996)
J. Mol. Biol
, vol.263
, pp. 70-78
-
-
Krengel, U.1
Dijkstra, B.W.2
-
9
-
-
0032984477
-
Molecular and biotechnological aspects of xylanases
-
Kulkarni N, Shendye A, Rao M (1999). Molecular and biotechnological aspects of xylanases. FEMS Microbiol. Rev. 23: 411-456.
-
(1999)
FEMS Microbiol. Rev
, vol.23
, pp. 411-456
-
-
Kulkarni, N.1
Shendye, A.2
Rao, M.3
-
10
-
-
33747333106
-
Use of dinitrosalicylic acid reagent for determination of reducing sugar
-
Miller GL (1959). Use of dinitrosalicylic acid reagent for determination of reducing sugar. Anal. Chem. 31: 426-428.
-
(1959)
Anal. Chem
, vol.31
, pp. 426-428
-
-
Miller, G.L.1
-
11
-
-
33744515651
-
Thermal stabilization of Bacillus subtilis family-11 xylanase by directed evolution
-
Miyazaki K, Takenouchi M, Kondo H, Noro N, Suzuki M, Tsuda S (2006). Thermal stabilization of Bacillus subtilis family-11 xylanase by directed evolution. J. Biol. Chem. 281: 10236-10242.
-
(2006)
J. Biol. Chem
, vol.281
, pp. 10236-10242
-
-
Miyazaki, K.1
Takenouchi, M.2
Kondo, H.3
Noro, N.4
Suzuki, M.5
Tsuda, S.6
-
12
-
-
75849121111
-
Using AutoDock for ligandreceptor docking. Curr. Protoc. Bioinformatics
-
Chapter 8; Unit 8; p
-
Morris GM, Huey R, Olson AJ (2008). Using AutoDock for ligandreceptor docking. Curr. Protoc. Bioinformatics Chapter 8; Unit 8; p. 14.
-
(2008)
, pp. 14
-
-
Morris, G.M.1
Huey, R.2
Olson, A.J.3
-
14
-
-
0032437592
-
Semirational design of active tumor suppressor p53 DNA binding domain with enhanced stability
-
Nikolova PV, Henckel J, Lane DP, Fersht AR (1998). Semirational design of active tumor suppressor p53 DNA binding domain with enhanced stability. Proc. Natl. Acad. Sci. USA, 95: 14675-14680.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 14675-14680
-
-
Nikolova, P.V.1
Henckel, J.2
Lane, D.P.3
Fersht, A.R.4
-
15
-
-
33747118985
-
Engineering increased thermostability in the thermostable GH-11 xylanase from Thermobacillus xylanilyticus
-
Paes G, O'Donohue MJ (2006). Engineering increased thermostability in the thermostable GH-11 xylanase from Thermobacillus xylanilyticus. J. Biotechnol. 125: 338-350.
-
(2006)
J. Biotechnol
, vol.125
, pp. 338-350
-
-
Paes, G.1
O'Donohue, M.J.2
-
16
-
-
39749179614
-
Thermostable variants of the recombinant xylanase A from Bacillus subtilis produced by directed evolution show reduced heat capacity changes
-
Ruller R, Deliberto L, Ferreira TL, Ward RJ (2008). Thermostable variants of the recombinant xylanase A from Bacillus subtilis produced by directed evolution show reduced heat capacity changes. Proteins: Struct. Funct. Genet. 70: 1280-1293.
-
(2008)
Proteins: Struct. Funct. Genet
, vol.70
, pp. 1280-1293
-
-
Ruller, R.1
Deliberto, L.2
Ferreira, T.L.3
Ward, R.J.4
-
17
-
-
0033169002
-
Catalysis and specificity in enzymatic glycoside hydrolysis: A 2,5B conformation for the glycosyl-enzyme intermediate revealed by the structure of the Bacillus agaradhaerens family 11 xylanase
-
Sabini E, Sulzenbacher G, Dauter M, Dauter Z, Jorgensen PL, Schulein M, Dupont C, Davies GJ, Wilson KS (1999). Catalysis and specificity in enzymatic glycoside hydrolysis: a 2,5B conformation for the glycosyl-enzyme intermediate revealed by the structure of the Bacillus agaradhaerens family 11 xylanase. Chem. Biol. 6: 483-492.
-
(1999)
Chem. Biol
, vol.6
, pp. 483-492
-
-
Sabini, E.1
Sulzenbacher, G.2
Dauter, M.3
Dauter, Z.4
Jorgensen, P.L.5
Schulein, M.6
Dupont, C.7
Davies, G.J.8
Wilson, K.S.9
-
18
-
-
0037045873
-
The endoxylanases from family 11: Computer analysis of protein sequences reveals important structural and phylogenetic relationships
-
Sapag A, Wouters J, Lambert C, de Ioannes P, Eyzaguirre J, Depiereux E (2002). The endoxylanases from family 11: computer analysis of protein sequences reveals important structural and phylogenetic relationships. J. Biotechnol. 95: 109-131.
-
(2002)
J. Biotechnol
, vol.95
, pp. 109-131
-
-
Sapag, A.1
Wouters, J.2
Lambert, C.3
de Ioannes, P.4
Eyzaguirre, J.5
Depiereux, E.6
-
19
-
-
0033609135
-
Sugar ring distortion in the glycosyl-enzyme intermediate of a family G/11 xylanase
-
Sidhu G, Withers SG, Nguyen NT, McIntosh LP, Ziser L, Brayer GD (1999). Sugar ring distortion in the glycosyl-enzyme intermediate of a family G/11 xylanase. Biochemistry, 38: 5346-5354.
-
(1999)
Biochemistry
, vol.38
, pp. 5346-5354
-
-
Sidhu, G.1
Withers, S.G.2
Nguyen, N.T.3
McIntosh, L.P.4
Ziser, L.5
Brayer, G.D.6
-
20
-
-
37849185207
-
Directed evolution of the thermostable xylanase from Thermomyces lanuginosus
-
Stephens DE, Rumbold K, Permaul K, Prior BA, Singh S (2007). Directed evolution of the thermostable xylanase from Thermomyces lanuginosus. J. Biotechnol. 127: 348-354.
-
(2007)
J. Biotechnol
, vol.127
, pp. 348-354
-
-
Stephens, D.E.1
Rumbold, K.2
Permaul, K.3
Prior, B.A.4
Singh, S.5
-
21
-
-
0034255443
-
A New Method for the Determination of Stability Parameters of Proteins from Their Heat-Induced Denaturation Curves
-
Sushma Y, Faizan A (2000). A New Method for the Determination of Stability Parameters of Proteins from Their Heat-Induced Denaturation Curves. Anal. Biochem. 283: 207-213.
-
(2000)
Anal. Biochem
, vol.283
, pp. 207-213
-
-
Sushma, Y.1
Faizan, A.2
-
22
-
-
0036217687
-
Engineering of multiple arginines into the Ser/Thr surface of Trichoderma reesei endo-1, 4-beta-xylanase II increases the thermotolerance and shifts the pH optimum towards alkaline pH
-
Turunen O, Vuorio M, Fenel F, Leisola M (2002). Engineering of multiple arginines into the Ser/Thr surface of Trichoderma reesei endo-1, 4-beta-xylanase II increases the thermotolerance and shifts the pH optimum towards alkaline pH. Protein Eng. 15: 141-145.
-
(2002)
Protein Eng
, vol.15
, pp. 141-145
-
-
Turunen, O.1
Vuorio, M.2
Fenel, F.3
Leisola, M.4
-
23
-
-
37549049016
-
Understanding the structural basis for substrate and inhibitor recognition in eukaryotic GH11 xylanases
-
Vardakou M, Dumon C, Murray JW, Christakopoulos P, Weiner DP, Juge N, Lewis RJ, Gilbert HJ, Flint JE (2008). Understanding the structural basis for substrate and inhibitor recognition in eukaryotic GH11 xylanases. J. Mol. Biol. 375: 1293-1305.
-
(2008)
J. Mol. Biol
, vol.375
, pp. 1293-1305
-
-
Vardakou, M.1
Dumon, C.2
Murray, J.W.3
Christakopoulos, P.4
Weiner, D.P.5
Juge, N.6
Lewis, R.J.7
Gilbert, H.J.8
Flint, J.E.9
-
24
-
-
0035098779
-
Hyperthermophilic enzymes: Sources, uses, and molecular mechanisms for thermostability
-
Vieille C, Zeikus GJ (2001). Hyperthermophilic enzymes: sources, uses, and molecular mechanisms for thermostability. Microbiol. Mol. Biol. Rev. 65: 1-43.
-
(2001)
Microbiol. Mol. Biol. Rev
, vol.65
, pp. 1-43
-
-
Vieille, C.1
Zeikus, G.J.2
-
25
-
-
0028211360
-
Mutational and crystallographic analyses of the active site residues of the Bacillus circulans xylanase
-
Wakarchuk WW, Campbell RL, Sung WL, Davoodi J, Yaguchi M (1994a). Mutational and crystallographic analyses of the active site residues of the Bacillus circulans xylanase. Protein Sci. 3: 467-475.
-
(1994)
Protein Sci
, vol.3
, pp. 467-475
-
-
Wakarchuk, W.W.1
Campbell, R.L.2
Sung, W.L.3
Davoodi, J.4
Yaguchi, M.5
-
26
-
-
0028080502
-
Thermostabilization of the Bacillus circulans xylanase by the introduction of disulfide bonds
-
Wakarchuk WW, Sung WL, Campbell RL, Cunningham A, Watson DC, Yaguchi M (1994b). Thermostabilization of the Bacillus circulans xylanase by the introduction of disulfide bonds. Protein Eng. 7: 1379-1386.
-
(1994)
Protein Eng
, vol.7
, pp. 1379-1386
-
-
Wakarchuk, W.W.1
Sung, W.L.2
Campbell, R.L.3
Cunningham, A.4
Watson, D.C.5
Yaguchi, M.6
-
27
-
-
33745273597
-
Probing the structural basis for the difference in thermostability displayed by family 10 xylanases
-
Xie H, Flint J, Vardakou M, Lakey JH, Lewis RJ, Gilbert HJ, Dumon C (2006). Probing the structural basis for the difference in thermostability displayed by family 10 xylanases. J. Mol. Biol. 360: 157-167.
-
(2006)
J. Mol. Biol
, vol.360
, pp. 157-167
-
-
Xie, H.1
Flint, J.2
Vardakou, M.3
Lakey, J.H.4
Lewis, R.J.5
Gilbert, H.J.6
Dumon, C.7
-
28
-
-
2942594230
-
Engineering the thermostability of Trichoderma reesei endo-1, 4-beta-xylanase II by combination of disulphide bridges
-
Xiong H, Fenel F, Leisola M, Turunen O (2004). Engineering the thermostability of Trichoderma reesei endo-1, 4-beta-xylanase II by combination of disulphide bridges. Extremophiles, 8: 393-400.
-
(2004)
Extremophiles
, vol.8
, pp. 393-400
-
-
Xiong, H.1
Fenel, F.2
Leisola, M.3
Turunen, O.4
-
29
-
-
33846885626
-
Introduction of a disulfide bridge enhances the thermostability of a Streptomyces olivaceoviridis xylanase mutant
-
Yang HM, Yao B, Meng K, Wang YR, Bai YG, Wu NF (2007). Introduction of a disulfide bridge enhances the thermostability of a Streptomyces olivaceoviridis xylanase mutant. J. Ind. Microbiol. Biotechnol. 34: 213-218.
-
(2007)
J. Ind. Microbiol. Biotechnol
, vol.34
, pp. 213-218
-
-
Yang, H.M.1
Yao, B.2
Meng, K.3
Wang, Y.R.4
Bai, Y.G.5
Wu, N.F.6
|