Sugar ring distortion in the glycosyl-enzyme intermediate of a family G/11 xylanase

Biochemistry

Volumn 38, Issue 17, 1999, Pages 5346-5354

  Sidhu, Gary ^a   Withers, Stephen G ^a   Nguyen, Nham T ^a   McIntosh, Lawrence P ^a   Ziser, Lothar ^a,b   Brayer, Gary D ^a  

^a UNIVERSITY OF BRITISH COLUMBIA   (Canada)

^b Inflazyme Pharmaceuticals Ltd   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

CARBOHYDRATE; GLYCOSIDASE; XYLAN ENDO 1,3 BETA XYLOSIDASE;

ARTICLE; BACILLUS CIRCULANS; CATALYSIS; ENZYME ACTIVE SITE; ENZYME ACTIVITY; ENZYME GLYCOSYLATION; ENZYME STRUCTURE; HYDROLYSIS; PRIORITY JOURNAL;

AMINO ACID SUBSTITUTION; BACILLUS; CATALYSIS; CRYSTALLOGRAPHY, X-RAY; DISACCHARIDES; ENDO-1,4-BETA XYLANASES; GRAM-POSITIVE ASPOROGENOUS RODS; MODELS, MOLECULAR; PHENYLALANINE; PROTEIN CONFORMATION; SUBSTRATE SPECIFICITY; TYROSINE; XYLOSE; XYLOSIDASES;

BACILLUS CIRCULANS;

EID: 0033609135     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi982946f     Document Type: Article

References (50)

1. Bernstein, F. C., Koetzle, T. F., Williams, G. J., Meyer, E. E., Jr., Brice, M. D., Rodgers, J. R., Kennard, O., Shimanouchi, T., and Tasumi, M. (1977) J. Mol. Biol. 112, 535-542.
2. Henrissat, B., and Davies, G. (1997) Curr. Opin. Struct. Biol. 7, 637-644.
3. Gebler, J., Gilkes, N. R., Claeyssens, M., Wilson, D. B., Beguin, P., Wakarchuk, W. W., Kilburn, D. G., Miller, R. C., Jr., Warren, R. A., and Withers, S. G. (1992) J. Biol. Chem. 267, 12559-12561.
4. Koshland, D. E. (1953) Biol. Rev. 28, 416-436.
5. McCarter, J. D., and Withers, S. G. (1994) Curr. Opin. Struct. Biol. 4, 885-892.
6. Paice, M. G., Gumagul, N., Page, D. H., and Jurasek, L. (1992) Enzyme Microb. Technol. 14, 272-276.
7. Coughlan, M. P., and Hazlewood, G. P. (1993) Biotechnol. Appl. Biochem. 17, 259-289.
8. Törrönen, A., and Rouvinen, J. (1997) J. Biotechnol. 57, 137-149.
9. Törrönen, A., and Rouvinen, J. (1995) Biochemistry 34, 847-856.
10. Krengel, U., and Dijkstra, B. W. (1996) J. Mol. Biol. 263, 70-78.
11. Campbell, R. L., Rose, D. R., Wakarchuk, W. W., To, R., Sung, W., and Yaguchi, M. (1993) in Proceedings of the Second TRICEL Symposia on Trichoderma reesei and Other Hydrolases (Suominen, P., and Reinikainen, T., Eds.) pp 63-72, Foundations for Biotechnical and Industrial Fermention, Helsinki, Finland.
12. Wakarchuk, W. W., Campbell, R. L., Sung, W. L., Davoodi, J., and Yaguchi, M. (1994) Protein Sci. 3, 467-475.
13. Wakarchuk, W., Methot, N., Lanthier, P., Sung, W., Seligy, V., Yaguchi, M., To, R., Campbell, R., and Rose, D. (1992) in Xylan and xylanases (Visser, J., Ed.) pp 439-442, Elsevier Science, Amsterdam, The Netherlands.
14. Withers, S. G., and Aebersold, R. (1995) Protein Sci. 4, 361-372.
15. Miao, S., Ziser, L., Aebersold, R., and Withers, S. G. (1994) Biochemistry 33, 7027-7032.
16. McIntosh, L. P., Hand, G., Johnson, P. E., Joshi, M. D., Korner, M., Plesniak, L. A., Ziser, L., Wakarchuk, W. W., and Withers, S. G. (1996) Biochemistry 35, 9958-9966.
17. Havukainen, R., Törrönen, A., Laitinen, T., and Rouvinen, J. (1996) Biochemistry 35, 9617-9624.
18. Withers, S. G., Street, I. P., Bird, P., and Dolphin, D. H. (1987) J. Am. Chem. Soc. 109, 7530-7531.
19. Withers, S. G., Rupitz, K., and Street, I. P. (1988) J. Biol. Chem. 263, 7929-7932.
20. White, A., Tull, D., Johns, K., Withers, S. G., and Rose, D. R. (1996) Nat. Struct. Biol. 3, 149-154.
21. Notenboom, V., Birsan, C., Warren, R. A. J., Withers, S. G., and Rose, D. R. (1998) Biochemistry 37, 4751-4758.
22. Burmeister, W. P., Cottaz, S., Driguez, H., Iori, R., Palmieri, S., and Henrissat, B. (1997) Structure 5, 663-675.
23. Davies, G. J., Mackenzie, L. F., Varrot, A., Dauter, M., Brzozwski, A. M., Schülein, M., and Withers, S. G. (1998) Biochemistry 37, 11707-11713.
24. Ziser, L., Setyawati, I., and Withers, S. G. (1995) Carbohydr. Res. 274, 137-153.
25. Otwinowski, Z., and Minor, W. (1997) Methods Enzymol. 276, 307-326.
26. Brünger, A. T. (1992) X-PLOR Version 3.1: A system for X-ray crystallography and NMR, Yale University Press, New Haven, CT.
27. Collaborative Computational Project Number 4 (1994) Acta Crystallogr., Sect. D 50, 760-763.
28. Jones, T. A., Zhou, J.-Y., Cowan, S. W., and Kjeldgaard, M. (1991) Acta Crystallogr., Sect. A 47, 110-119.
29. Luzzati, P. V. (1952) Acta Crystallogr., Sect. A 50, 803-810.
30. Davies, G. J., Wilson, K. S., and Henrissat, B. (1997) Biochem. J. 321, 557-559.
31. IUPAC-IUB (1980) Eur. J. Biochem. 111, 295-298.
32. Vyas, N. K. (1991) Curr. Opin. Struct. Biol. 1, 732-740.
33. Sinnott, M. L. (1990) Chem. Rev. 90, 1171-1202.
34. Stoddart, J. F. (1971) Stereochemistry of Carbohydrates, John Wiley and Sons, New York.
35. Joshi, M. D., Hedberg, A., and McIntosh, L. P. (1997) Protein Sci. 6, 2667-2670.
36. Gebler, J. C., Trimbur, D. E., Warren, A. J., Aebersold, R., Namchuk, M., and Withers, S. G. (1995) Biochemistry 34, 14547-14553.
37. Baker, E. N., and Hubbard, R. E. (1984) Prog. Biophys. Mol. Biol. 44, 97-179.
38. Jones, P. G., and Kirby, A. J. (1984) J. Am. Chem. Soc. 106, 6207-6212.
39. Namchuk, M. N., and Withers, S. G. (1995) Biochemistry 34, 16194-16202.
40. Notenboom, V., Birsan, C., Nitz, M., Rose, D. R., Warren, R. A. J., and Withers, S. G, (1998) Nat. Struct. Biol. 5, 812-818.
41. Tull, D., and Withers, S. G. (1994) Biochemistry 33, 6363-6370.
42. Hosie, L., and Sinnott, M. L. (1985) Biochem. J. 226, 437-446.
43. Deslongchamps, P. (1983) Stereoelectronic effects in organic chemistry, 1st ed., Pergamon Press, Oxford; New York.
44. Sulzenbacher, G., Driguez, H., Henrissat, B., Schülein, M., and Davies, G. J. (1996) Biochemistry 35, 15280-15287.
45. Tews, I., Perrakis, A., Oppenheim, A., Dauter, Z., Wilson, K. S., and Vorgias, C. E. (1996) Nat. Struct. Biol 3, 638-648.
46. Strynadka, N. C., and James, M. N. (1991) J. Mol. Biol. 220, 401-424.
47. Kraulis, P. J. (1991) J. Appl. Crystallogr. 24, 946-950.
48. Merritt, E. A., and Murphy, M. E. P. (1994) Acta Crystallogr., Sect. D 50, 869-873.
49. McDonald, I. K., and Thorton, J. M. (1994) J. Mol. Biol. 238, 777-793.
50. Wallace, A. C., Laskowski, R. A., and Thornton, J. M. (1995) Protein Eng. 8, 127-134.