메뉴 건너뛰기




Volumn 8, Issue 1, 2010, Pages 69-77

Bioinformatics for biodefense: Challenges and opportunities

Author keywords

[No Author keywords available]

Indexed keywords

RIBOSOME DNA; TOXIN;

EID: 77949650928     PISSN: 15387135     EISSN: None     Source Type: Journal    
DOI: 10.1089/bsp.2009.0024     Document Type: Review
Times cited : (11)

References (91)
  • 1
    • 24644479176 scopus 로고    scopus 로고
    • Bioweapons could kill more in one strike than guns
    • Wendl MC. Bioweapons could kill more in one strike than guns. Nature 2005;437(7056):192.
    • (2005) Nature , vol.437 , Issue.7056 , pp. 192
    • Wendl, M.C.1
  • 2
    • 55449091796 scopus 로고    scopus 로고
    • The bioterrorist cookbook
    • Dando M. The bioterrorist cookbook. Bull At Sci 2005; 61(6):34-39.
    • (2005) Bull at Sci , vol.61 , Issue.6 , pp. 34-39
    • Dando, M.1
  • 4
    • 0033605364 scopus 로고    scopus 로고
    • The looming threat of bioterrorism
    • Henderson DA. The looming threat of bioterrorism. Science 1999;283(5406):1279-1282.
    • (1999) Science , vol.283 , Issue.5406 , pp. 1279-1282
    • Henderson, D.A.1
  • 5
    • 52049111636 scopus 로고    scopus 로고
    • Emerging infections: Lessons from the viral hemorrhagic fevers
    • discussion 96-97
    • Peters CJ. Emerging infections: lessons from the viral hemorrhagic fevers. Trans Am Clin Climatol Assoc 2006;117:189-196; discussion 96-97.
    • (2006) Trans Am Clin Climatol Assoc , vol.117 , pp. 189-196
    • Peters, C.J.1
  • 6
    • 34547398052 scopus 로고    scopus 로고
    • Strengthening bioterrorism prevention: Global biological materials management
    • Salerno RM, Hickok LT. Strengthening bioterrorism prevention: global biological materials management. Biosecur Bioterror 2007;5(2):107-116.
    • (2007) Biosecur Bioterror , vol.5 , Issue.2 , pp. 107-116
    • Salerno, R.M.1    Hickok, L.T.2
  • 7
    • 48949116406 scopus 로고    scopus 로고
    • Emerging zoonoses: The challenge for public health and biodefense
    • Murphy FA. Emerging zoonoses: the challenge for public health and biodefense. Prev Vet Med 2008;86(3-4):216-223.
    • (2008) Prev Vet Med , vol.86 , Issue.3-4 , pp. 216-223
    • Murphy, F.A.1
  • 8
    • 77949598316 scopus 로고    scopus 로고
    • Managing dual use technology: It takes two to tango
    • Apr 26
    • Kant L, Mourya DT. Managing dual use technology: it takes two to tango. Sci Eng Ethics 2008 Apr 26.
    • (2008) Sci Eng Ethics
    • Kant, L.1    Mourya, D.T.2
  • 9
    • 33749513771 scopus 로고    scopus 로고
    • The dual-use dilemma for the life sciences: Perspectives, conundrums, and global solutions
    • Atlas RM, Dando M. The dual-use dilemma for the life sciences: perspectives, conundrums, and global solutions. Biosecur Bioterror 2006;4(3):276-286.
    • (2006) Biosecur Bioterror , vol.4 , Issue.3 , pp. 276-286
    • Atlas, R.M.1    Dando, M.2
  • 10
    • 33748675934 scopus 로고    scopus 로고
    • A brave new world in the life sciences
    • Choffnes ER, Lemon SM, Relman DA. A brave new world in the life sciences. Bull At Sci 2006;62(5):26-33.
    • (2006) Bull at Sci , vol.62 , Issue.5 , pp. 26-33
    • Choffnes, E.R.1    Lemon, S.M.2    Relman, D.A.3
  • 11
    • 1842434267 scopus 로고    scopus 로고
    • Biodefense R & D: Anticipating future threats, establishing a strategic environment
    • Smith BT, Inglesby TV, O'Toole T. Biodefense R&D: anticipating future threats, establishing a strategic environment. Biosecur Bioterror 2003;1(3):193-202.
    • (2003) Biosecur Bioterror , vol.1 , Issue.3 , pp. 193-202
    • Smith, B.T.1    Inglesby, T.V.2    O'Toole, T.3
  • 12
    • 33646645814 scopus 로고    scopus 로고
    • The White House. Homeland Security Presidential Directive 9 (HSPD-9). February 3, Accessed January 27, 2010
    • The White House. Homeland Security Presidential Directive 9 (HSPD-9). Defense of United States Agriculture and Food. February 3, 2004. http://www.fas.org/irp/offdocs/nspd/hspd-9.html. Accessed January 27, 2010.
    • (2004) Defense of United States Agriculture and Food
  • 13
    • 12344254426 scopus 로고    scopus 로고
    • The White House. Homeland Security Presidential Directive 10 (HSPD-10). April 28, Accessed January 27, 2010
    • st Century. April 28, 2004. http://www.fas.org/ irp/offdocs/nspd/hspd-10.html. Accessed January 27, 2010.
    • (2004) st Century
  • 14
    • 77949842915 scopus 로고    scopus 로고
    • The White House. Homeland Security Presidential Directive 18 (HSPD-18). February 7, Accessed January 27, 2010
    • The White House. Homeland Security Presidential Directive 18 (HSPD-18). Medical Countermeasures against Weapons of Mass Destruction. February 7, 2007. http://www.fas.org/ irp/offdocs/nspd/hspd-18.html. Accessed January 27, 2010.
    • (2007) Medical Countermeasures Against Weapons of Mass Destruction
  • 15
    • 58249125458 scopus 로고    scopus 로고
    • The White House. Homeland Security Presidential Directive 21 (HSPD-21). October 18, Accessed January 27, 2010
    • The White House. Homeland Security Presidential Directive 21 (HSPD-21). Public Health and Medical Preparedness. October 18, 2007. http://www.fas.org/ irp/offdocs/nspd/ hspd-21.htm. Accessed January 27, 2010.
    • (2007) Public Health and Medical Preparedness
  • 16
    • 55549118890 scopus 로고    scopus 로고
    • Deceptive imprinting and immune refocusing in vaccine design
    • Tobin GJ, Trujillo JD, Bushnell RV, et al. Deceptive imprinting and immune refocusing in vaccine design. Vaccine 2008;26(49):6189-6199.
    • (2008) Vaccine , vol.26 , Issue.49 , pp. 6189-6199
    • Tobin, G.J.1    Trujillo, J.D.2    Bushnell, R.V.3
  • 17
    • 67349215704 scopus 로고    scopus 로고
    • Directed molecular evolution improves the immunogenicity and protective efficacy of a Venezuelan equine encephalitis virus DNA vaccine
    • Jun 24
    • Dupuy LC, Locher CP, Paidhungat M, et al. Directed molecular evolution improves the immunogenicity and protective efficacy of a Venezuelan equine encephalitis virus DNA vaccine. Vaccine 2009 Jun 24;27(31):4152-4160.
    • (2009) Vaccine , vol.27 , Issue.31 , pp. 4152-4160
    • Dupuy, L.C.1    Locher, C.P.2    Paidhungat, M.3
  • 18
    • 17744412936 scopus 로고    scopus 로고
    • Comparative genomics tools applied to bioterrorism defence
    • Slezak T, Kuczmarski T, Ott L, et al. Comparative genomics tools applied to bioterrorism defence. Brief Bioinform 2003; 4(2):133-149.
    • (2003) Brief Bioinform , vol.4 , Issue.2 , pp. 133-149
    • Slezak, T.1    Kuczmarski, T.2    Ott, L.3
  • 19
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
    • Altschul SF, Madden TL, Schaffer AA, et al. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 1997;25(17):3389-3402.
    • (1997) Nucleic Acids Res , vol.25 , Issue.17 , pp. 3389-3402
    • Altschul, S.F.1    Madden, T.L.2    Schaffer, A.A.3
  • 20
    • 44949157290 scopus 로고    scopus 로고
    • A probabilistic model of local sequence alignment that simplifies statistical significance estimation
    • Eddy SR. A probabilistic model of local sequence alignment that simplifies statistical significance estimation. PLoS Comput Biol 2008;4(5):e1000069.
    • (2008) PLoS Comput Biol , vol.4 , Issue.5
    • Eddy, S.R.1
  • 21
    • 33745828696 scopus 로고    scopus 로고
    • Score-based prediction of genomic islands in prokaryotic genomes using hidden Markov models
    • Waack S, Keller O, Asper R, et al. Score-based prediction of genomic islands in prokaryotic genomes using hidden Markov models. BMC Bioinformatics 2006;7:142.
    • (2006) BMC Bioinformatics , vol.7 , pp. 142
    • Waack, S.1    Keller, O.2    Asper, R.3
  • 22
    • 54949145799 scopus 로고    scopus 로고
    • VarDB: A pathogen-specific sequence database of protein families involved in antigenic variation
    • Hayes CN, Diez D, Joannin N, et al. varDB: a pathogen-specific sequence database of protein families involved in antigenic variation. Bioinformatics 2008;24(21):2564-2565.
    • (2008) Bioinformatics , vol.24 , Issue.21 , pp. 2564-2565
    • Hayes, C.N.1    Diez, D.2    Joannin, N.3
  • 23
    • 33846044584 scopus 로고    scopus 로고
    • MvirDB-a microbial database of protein toxins, virulence factors and antibiotic resistance genes for bio-defence applications
    • Zhou CE, Smith J, Lam M, Zemla A, Dyer MD, Slezak T. MvirDB-a microbial database of protein toxins, virulence factors and antibiotic resistance genes for bio-defence applications. Nucleic Acids Res 2007;35(database issue):D391-394.
    • (2007) Nucleic Acids Res , vol.35 , Issue.DATABASE ISSUE
    • Zhou, C.E.1    Smith, J.2    Lam, M.3    Zemla, A.4    Dyer, M.D.5    Slezak, T.6
  • 24
    • 4644269503 scopus 로고    scopus 로고
    • Comparative homology agreement search: An effective combination of homology-search methods
    • Alam I, Dress A, Rehmsmeier M, Fuellen G. Comparative homology agreement search: an effective combination of homology-search methods. Proc Natl Acad Sci U S A 2004; 101(38):13814-13819.
    • (2004) Proc Natl Acad Sci U S A , vol.101 , Issue.38 , pp. 13814-13819
    • Alam, I.1    Dress, A.2    Rehmsmeier, M.3    Fuellen, G.4
  • 25
    • 0027954534 scopus 로고
    • Analysis of 16S ribosomal DNA sequences of Francisella strains and utilization for determination of the phylogeny of the genus and for identification of strains by PCR
    • Forsman M, Sandstrom G, Sjostedt A. Analysis of 16S ribosomal DNA sequences of Francisella strains and utilization for determination of the phylogeny of the genus and for identification of strains by PCR. Int J Syst Bacteriol 1994; 44(1):38-46.
    • (1994) Int J Syst Bacteriol , vol.44 , Issue.1 , pp. 38-46
    • Forsman, M.1    Sandstrom, G.2    Sjostedt, A.3
  • 26
    • 84856205140 scopus 로고    scopus 로고
    • Phylogeny in aid of the present and novel microbial lineages: Diversity in Bacillus
    • Porwal S, Lal S, Cheema S, Kalia VC. Phylogeny in aid of the present and novel microbial lineages: diversity in Bacillus. PLoS One 2009;4(2):e4438.
    • (2009) PLoS One , vol.4 , Issue.2
    • Porwal, S.1    Lal, S.2    Cheema, S.3    Kalia, V.C.4
  • 27
    • 24344446978 scopus 로고    scopus 로고
    • DNA assays for detection, identification, and individualization of select agent microorganisms
    • Jones SW, Dobson ME, Francesconi SC, Schoske R, Crawford R. DNA assays for detection, identification, and individualization of select agent microorganisms. Croat Med J 2005;46(4):522-529.
    • (2005) Croat Med J , vol.46 , Issue.4 , pp. 522-529
    • Jones, S.W.1    Dobson, M.E.2    Francesconi, S.C.3    Schoske, R.4    Crawford, R.5
  • 28
    • 84920629237 scopus 로고    scopus 로고
    • A renaissance for the pioneering 16S rRNA gene
    • Tringe SG, Hugenholtz P. A renaissance for the pioneering 16S rRNA gene. Curr Opin Microbiol 2008;11(5):442-446.
    • (2008) Curr Opin Microbiol , vol.11 , Issue.5 , pp. 442-446
    • Tringe, S.G.1    Hugenholtz, P.2
  • 29
    • 37649020734 scopus 로고    scopus 로고
    • On the species-specificity of DNA: Fifty years later
    • Shneyer VS. On the species-specificity of DNA: fifty years later. Biochemistry (Mosc) 2007;72(12):1377-1384.
    • (2007) Biochemistry (Mosc) , vol.72 , Issue.12 , pp. 1377-1384
    • Shneyer, V.S.1
  • 30
    • 0026891169 scopus 로고
    • Comparative analysis of 23S ribosomal RNA gene sequences of Bacillus anthracis and emetic Bacillus cereus determined by PCR-direct sequencing
    • Ash C, Collins MD. Comparative analysis of 23S ribosomal RNA gene sequences of Bacillus anthracis and emetic Bacillus cereus determined by PCR-direct sequencing. FEMS Microbiol Lett 1992;73(1-2):75-80.
    • (1992) FEMS Microbiol Lett , vol.73 , Issue.1-2 , pp. 75-80
    • Ash, C.1    Collins, M.D.2
  • 31
    • 33747888802 scopus 로고    scopus 로고
    • Ribosomal RNA as molecular barcodes: A simple correlation analysis without sequence alignment
    • Chu KH, Li CP, Qi J. Ribosomal RNA as molecular barcodes: a simple correlation analysis without sequence alignment. Bioinformatics 2006;22(14):1690-1701.
    • (2006) Bioinformatics , vol.22 , Issue.14 , pp. 1690-1701
    • Chu, K.H.1    Li, C.P.2    Qi, J.3
  • 32
    • 29144532549 scopus 로고    scopus 로고
    • ITS1 sequence variabilities correlate with 18S rDNA sequence types in the genus Acanthamoeba (Protozoa: Amoebozoa)
    • Kohsler M, Leitner B, Blaschitz M, Michel R, Aspock H, Walochnik J. ITS1 sequence variabilities correlate with 18S rDNA sequence types in the genus Acanthamoeba (Protozoa: Amoebozoa). Parasitol Res 2006;98(2):86-93.
    • (2006) Parasitol Res , vol.98 , Issue.2 , pp. 86-93
    • Kohsler, M.1    Leitner, B.2    Blaschitz, M.3    Michel, R.4    Aspock, H.5    Walochnik, J.6
  • 33
    • 34447260522 scopus 로고    scopus 로고
    • Is multiple-sequence alignment required for accurate inference of phylogeny?
    • Hohl M, Ragan MA. Is multiple-sequence alignment required for accurate inference of phylogeny? Syst Biol 2007; 56(2):206-221.
    • (2007) Syst Biol , vol.56 , Issue.2 , pp. 206-221
    • Hohl, M.1    Ragan, M.A.2
  • 35
    • 58249100073 scopus 로고    scopus 로고
    • Is a new and general theory of molecular systematics emerging?
    • Edwards SV. Is a new and general theory of molecular systematics emerging? Evolution 2009;63(1):1-19.
    • (2009) Evolution , vol.63 , Issue.1 , pp. 1-19
    • Edwards, S.V.1
  • 37
    • 34047110724 scopus 로고    scopus 로고
    • Whole genome molecular phylogeny of large dsDNA viruses using composition vector method
    • Gao L, Qi J. Whole genome molecular phylogeny of large dsDNA viruses using composition vector method. BMC Evol Biol 2007;7:41.
    • (2007) BMC Evol Biol , vol.7 , pp. 41
    • Gao, L.1    Qi, J.2
  • 38
    • 0024283666 scopus 로고
    • Loss of information in genetic distances
    • Steel MA, Hendy MD, Penny D. Loss of information in genetic distances. Nature 1988;336(6195):118.
    • (1988) Nature , vol.336 , Issue.6195 , pp. 118
    • Steel, M.A.1    Hendy, M.D.2    Penny, D.3
  • 39
    • 17744394753 scopus 로고    scopus 로고
    • Phylogenomics and the reconstruction of the tree of life
    • Delsuc F, Brinkmann H, Philippe H. Phylogenomics and the reconstruction of the tree of life. Nat Rev Genet 2005; 6(5):361-375.
    • (2005) Nat Rev Genet , vol.6 , Issue.5 , pp. 361-375
    • Delsuc, F.1    Brinkmann, H.2    Philippe, H.3
  • 40
    • 0035861456 scopus 로고    scopus 로고
    • Bayesian inference of phylogeny and its impact on evolutionary biology
    • Huelsenbeck JP, Ronquist F, Nielsen R, Bollback JP. Bayesian inference of phylogeny and its impact on evolutionary biology. Science 2001;294(5550):2310- 2314.
    • (2001) Science , vol.294 , Issue.5550 , pp. 2310-2314
    • Huelsenbeck, J.P.1    Ronquist, F.2    Nielsen, R.3    Bollback, J.P.4
  • 41
    • 33750983947 scopus 로고    scopus 로고
    • Clearcut: A fast implementation of relaxed neighbor joining
    • Sheneman L, Evans J, Foster JA. Clearcut: a fast implementation of relaxed neighbor joining. Bioinformatics 2006; 22(22):2823-2824.
    • (2006) Bioinformatics , vol.22 , Issue.22 , pp. 2823-2824
    • Sheneman, L.1    Evans, J.2    Foster, J.A.3
  • 42
    • 41849149340 scopus 로고    scopus 로고
    • Inferring species membership using DNA sequences with back-propagation neural networks
    • Zhang AB, Sikes DS, Muster C, Li SQ. Inferring species membership using DNA sequences with back-propagation neural networks. Syst Biol 2008;57(2):202-215.
    • (2008) Syst Biol , vol.57 , Issue.2 , pp. 202-215
    • Zhang, A.B.1    Sikes, D.S.2    Muster, C.3    Li, S.Q.4
  • 43
    • 22144482212 scopus 로고    scopus 로고
    • The Microbial Rosetta Stone database: A common structure for microbial biose-curity threat agents
    • Ecke DJ, Sampath R, Willett P, et al. The Microbial Rosetta Stone database: a common structure for microbial biose-curity threat agents. J Forensic Sci 2005;50(6):1380-1385.
    • (2005) J Forensic Sci , vol.50 , Issue.6 , pp. 1380-1385
    • Ecke, D.J.1    Sampath, R.2    Willett, P.3
  • 44
    • 84934443209 scopus 로고    scopus 로고
    • A new asset for pathogen informatics-the Enteropathogen Resource Integration Center (ERIC), an NIAID bioinformatics resource center for biodefense and emerging/re-emerging infectious disease
    • Greene JM, Plunkett 3rd G, Burland V, et al. A new asset for pathogen informatics-the Enteropathogen Resource Integration Center (ERIC), an NIAID Bioinformatics Resource Center for Biodefense and Emerging/Re-emerging Infectious Disease. Adv Exp Med Biol 2007;603:28-42.
    • (2007) Adv Exp Med Biol , vol.603 , pp. 28-42
    • Greene, J.M.1    Plunkett III, G.2    Burland, V.3
  • 45
    • 13444283827 scopus 로고    scopus 로고
    • Poxvirus bioinformatics resource center: A comprehensive poxviridae informational and analytical resource
    • Lefkowitz EJ, Upton C, Changayil SS, Buck C, Traktman P, Buller RM. Poxvirus Bioinformatics Resource Center: a comprehensive Poxviridae informational and analytical resource. Nucleic Acids Res 2005;33(database issue):D311-316.
    • (2005) Nucleic Acids Res , vol.33 , Issue.DATABASE ISSUE
    • Lefkowitz, E.J.1    Upton, C.2    Changayil, S.S.3    Buck, C.4    Traktman, P.5    Buller, R.M.6
  • 46
    • 38549173725 scopus 로고    scopus 로고
    • An emerging cyber-infrastructure for biodefense pathogen and pathogen-host data
    • Zhang C, Crasta O, Cammer S, et al. An emerging cyber-infrastructure for biodefense pathogen and pathogen-host data. Nucleic Acids Res 2008;36(database issue):D884-891.
    • (2008) Nucleic Acids Res , vol.36 , Issue.DATABASE ISSUE
    • Zhang, C.1    Crasta, O.2    Cammer, S.3
  • 47
    • 3142738149 scopus 로고    scopus 로고
    • National center for biotechnology information viral genomes project
    • Bao Y, Federhen S, Leipe D, et al. National center for biotechnology information viral genomes project. J Virol 2004;78(14):7291-7298.
    • (2004) J Virol , vol.78 , Issue.14 , pp. 7291-7298
    • Bao, Y.1    Federhen, S.2    Leipe, D.3
  • 48
    • 0029689851 scopus 로고    scopus 로고
    • Towards a universal virus database-progress in the ICTVdB
    • Buechen-Osmond C, Dallwitz M. Towards a universal virus database-progress in the ICTVdB. Arch Virol 1996;141(2): 392-399.
    • (1996) Arch Virol , vol.141 , Issue.2 , pp. 392-399
    • Buechen-Osmond, C.1    Dallwitz, M.2
  • 49
    • 65549109753 scopus 로고    scopus 로고
    • The next meta-challenge for Bioinformatics
    • Valdivia-Granda W. The next meta-challenge for Bioinformatics. Bioinformation 2008;2(8):358-362.
    • (2008) Bioinformation , vol.2 , Issue.8 , pp. 358-362
    • Valdivia-Granda, W.1
  • 50
    • 45749154807 scopus 로고    scopus 로고
    • A standard MIGS/MIMS compliant XML Schema: Toward the development of the Genomic Contextual Data Markup Language (GCDML)
    • Kottmann R, Gray T, Murphy S, et al. A standard MIGS/MIMS compliant XML Schema: toward the development of the Genomic Contextual Data Markup Language (GCDML). Omics 2008;12(2):115-121.
    • (2008) Omics , vol.12 , Issue.2 , pp. 115-121
    • Kottmann, R.1    Gray, T.2    Murphy, S.3
  • 51
    • 43449108562 scopus 로고    scopus 로고
    • The minimum information about a genome sequence (MIGS) specification
    • Field D, Garrity G, Gray T, et al. The minimum information about a genome sequence (MIGS) specification. Nat Biotechnol 2008;26(5):541-547.
    • (2008) Nat Biotechnol , vol.26 , Issue.5 , pp. 541-547
    • Field, D.1    Garrity, G.2    Gray, T.3
  • 52
    • 33846082223 scopus 로고    scopus 로고
    • PATRIC: The VBI pathosystems resource integration center
    • Snyder EE, Kampanya N, Lu J, et al. PATRIC: the VBI PathoSystems Resource Integration Center. Nucleic Acids Res 2007;35(database issue):D401-406.
    • (2007) Nucleic Acids Res , vol.35 , Issue.DATABASE ISSUE
    • Snyder, E.E.1    Kampanya, N.2    Lu, J.3
  • 53
    • 12744273413 scopus 로고    scopus 로고
    • PIML: The pathogen information markup language
    • He Y, Vines RR, Wattam AR, et al. PIML: the Pathogen Information Markup Language. Bioinformatics 2005;21(1): 116-121.
    • (2005) Bioinformatics , vol.21 , Issue.1 , pp. 116-121
    • He, Y.1    Vines, R.R.2    Wattam, A.R.3
  • 54
    • 77649250288 scopus 로고    scopus 로고
    • The RODS Open Source Project: Removing a barrier to syndromic surveillance
    • Espino JU, Wagner MM, Tsui FC, et al. The RODS Open Source Project: removing a barrier to syndromic surveillance. Stud Health Technol Inform 2004;107(Pt 2):1192-1196.
    • (2004) Stud Health Technol Inform , vol.107 , Issue.PART 2 , pp. 1192-1196
    • Espino, J.U.1    Wagner, M.M.2    Tsui, F.C.3
  • 55
    • 33750081095 scopus 로고    scopus 로고
    • Department of defense global emerging infections surveillance and response system indian ocean tsunami response
    • Chretien JP, Glass JS, Coldren RC, et al. Department of Defense Global Emerging Infections Surveillance and Response System Indian Ocean tsunami response. Mil Med 2006;171(10 Suppl 1):12-14.
    • (2006) Mil Med , vol.171 , Issue.10 SUPPL. 1 , pp. 12-14
    • Chretien, J.P.1    Glass, J.S.2    Coldren, R.C.3
  • 56
    • 0141868978 scopus 로고    scopus 로고
    • Public health. Building microbial forensics as a response to bioterrorism
    • Budowle B, Schutzer SE, Einseln A, et al. Public health. Building microbial forensics as a response to bioterrorism. Science 2003;301(5641):1852- 1853.
    • (2003) Science , vol.301 , Issue.5641 , pp. 1852-1853
    • Budowle, B.1    Schutzer, S.E.2    Einseln, A.3
  • 57
    • 34548221507 scopus 로고    scopus 로고
    • Role of law enforcement response and microbial forensics in investigation of bioterrorism
    • Budowle B, Beaudry JA, Barnaby NG, Giusti AM, Bannan JD, Keim P. Role of law enforcement response and microbial forensics in investigation of bioterrorism. Croat Med J 2007; 48(4):437-449.
    • (2007) Croat Med J , vol.48 , Issue.4 , pp. 437-449
    • Budowle, B.1    Beaudry, J.A.2    Barnaby, N.G.3    Giusti, A.M.4    Bannan, J.D.5    Keim, P.6
  • 58
    • 70249117523 scopus 로고    scopus 로고
    • Extracting evidence from forensic DNA analyses: Future molecular biology directions
    • 342-350
    • Budowle B, van Daal A. Extracting evidence from forensic DNA analyses: future molecular biology directions. Biotechniques 2009;46(5):339-340, 342-350.
    • (2009) Biotechniques , vol.46 , Issue.5 , pp. 339-340
    • Budowle, B.1    Van Daal, A.2
  • 59
    • 0032477733 scopus 로고    scopus 로고
    • PCR analysis of tissue samples from the 1979 Sverdlovsk anthrax victims: The presence of multiple Bacillus anthracis strains in different victims
    • Jackson PJ, Hugh-Jones ME, Adair DM, et al. PCR analysis of tissue samples from the 1979 Sverdlovsk anthrax victims: the presence of multiple Bacillus anthracis strains in different victims. Proc Natl Acad Sci U S A 1998;95(3):1224-1229.
    • (1998) Proc Natl Acad Sci U S A , vol.95 , Issue.3 , pp. 1224-1229
    • Jackson, P.J.1    Hugh-Jones, M.E.2    Adair, D.M.3
  • 60
    • 25444528297 scopus 로고    scopus 로고
    • Software for optimization of SNP and PCR-RFLP genotyping to discriminate many genomes with the fewest assays
    • Gardner SN, Wagner MC. Software for optimization of SNP and PCR-RFLP genotyping to discriminate many genomes with the fewest assays. BMC Genomics 2005;6(1):73.
    • (2005) BMC Genomics , vol.6 , Issue.1 , pp. 73
    • Gardner, S.N.1    Wagner, M.C.2
  • 62
    • 0142056169 scopus 로고    scopus 로고
    • An applications-focused review of comparative genomics tools: Capabilities, limitations and future challenges
    • Chain P, Kurtz S, Ohlebusch E, Slezak T. An applications-focused review of comparative genomics tools: capabilities, limitations and future challenges. Brief Bioinform 2003;4(2): 105-123.
    • (2003) Brief Bioinform , vol.4 , Issue.2 , pp. 105-123
    • Chain, P.1    Kurtz, S.2    Ohlebusch, E.3    Slezak, T.4
  • 63
    • 0035209527 scopus 로고    scopus 로고
    • Molecular investigation of the Aum Shinrikyo anthrax release in Kameido, Japan
    • Keim P, Smith KL, Keys C, Takahashi H, Kurata T, Kaufmann A. Molecular investigation of the Aum Shinrikyo anthrax release in Kameido, Japan. J Clin Microbiol 2001; 39(12):4566-4567.
    • (2001) J Clin Microbiol , vol.39 , Issue.12 , pp. 4566-4567
    • Keim, P.1    Smith, K.L.2    Keys, C.3    Takahashi, H.4    Kurata, T.5    Kaufmann, A.6
  • 64
    • 0038752613 scopus 로고    scopus 로고
    • The genome sequence of Bacillus anthracis Ames and comparison to closely related bacteria
    • Read TD, Peterson SN, Tourasse N, et al. The genome sequence of Bacillus anthracis Ames and comparison to closely related bacteria. Nature 2003;423(6935):81-86.
    • (2003) Nature , vol.423 , Issue.6935 , pp. 81-86
    • Read, T.D.1    Peterson, S.N.2    Tourasse, N.3
  • 65
    • 33846185879 scopus 로고    scopus 로고
    • Strain-specific single-nucleotide polymorphism assays for the Bacillus anthracis Ames strain
    • Van Ert MN, Easterday WR, Simonson TS, et al. Strain-specific single-nucleotide polymorphism assays for the Bacillus anthracis Ames strain. J Clin Microbiol 2007;45(1):47-53.
    • (2007) J Clin Microbiol , vol.45 , Issue.1 , pp. 47-53
    • Van Ert, M.N.1    Easterday, W.R.2    Simonson, T.S.3
  • 66
    • 58149500119 scopus 로고    scopus 로고
    • The complete genome sequence of Bacillus anthracis Ames "ancestor."
    • Ravel J, Jiang L, Stanley ST, et al. The complete genome sequence of Bacillus anthracis Ames "Ancestor." J Bacteriol 2009;191(1):445-446.
    • (2009) J Bacteriol , vol.191 , Issue.1 , pp. 445-446
    • Ravel, J.1    Jiang, L.2    Stanley, S.T.3
  • 67
    • 0037077108 scopus 로고    scopus 로고
    • Comparative genome sequencing for discovery of novel polymorphisms in Bacillus anthracis
    • Read TD, Salzberg SL, Pop M, et al. Comparative genome sequencing for discovery of novel polymorphisms in Bacillus anthracis. Science 2002;296(5575):2028-2033.
    • (2002) Science , vol.296 , Issue.5575 , pp. 2028-2033
    • Read, T.D.1    Salzberg, S.L.2    Pop, M.3
  • 68
    • 33644904101 scopus 로고    scopus 로고
    • Single-nucleotide repeat analysis for subtyping Bacillus anthracis isolates
    • Stratilo CW, Lewis CT, Bryden L, Mulvey MR, Bader D. Single-nucleotide repeat analysis for subtyping Bacillus anthracis isolates. J Clin Microbiol 2006;44(3):777-782.
    • (2006) J Clin Microbiol , vol.44 , Issue.3 , pp. 777-782
    • Stratilo, C.W.1    Lewis, C.T.2    Bryden, L.3    Mulvey, M.R.4    Bader, D.5
  • 69
    • 42149098833 scopus 로고    scopus 로고
    • High resolution genotyping of Bacillus anthracis outbreak strains using four highly mutable single nucleotide repeat markers
    • Kenefic LJ, Beaudry J, Trim C, et al. High resolution genotyping of Bacillus anthracis outbreak strains using four highly mutable single nucleotide repeat markers. Lett Appl Microbiol 2008;46(5):600-603.
    • (2008) Lett Appl Microbiol , vol.46 , Issue.5 , pp. 600-603
    • Kenefic, L.J.1    Beaudry, J.2    Trim, C.3
  • 70
    • 0346024120 scopus 로고    scopus 로고
    • Koehler TM. atxA controls Bacillus anthracis capsule synthesis via acpA and a newly discovered regulator, acpB
    • Drysdale M, Bourgogne A, Hilsenbeck SG, Koehler TM. atxA controls Bacillus anthracis capsule synthesis via acpA and a newly discovered regulator, acpB. J Bacteriol 2004; 186(2):307-315.
    • (2004) J Bacteriol , vol.186 , Issue.2 , pp. 307-315
    • Drysdale, M.1    Bourgogne, A.2    Hilsenbeck, S.G.3
  • 71
    • 22544451825 scopus 로고    scopus 로고
    • Transcriptional analysis of the Bacillus anthracis capsule regulators
    • Drysdale M, Bourgogne A, Koehler TM. Transcriptional analysis of the Bacillus anthracis capsule regulators. J Bacteriol 2005;187(15):5108-5114.
    • (2005) J Bacteriol , vol.187 , Issue.15 , pp. 5108-5114
    • Drysdale, M.1    Bourgogne, A.2    Koehler, T.M.3
  • 72
    • 34248340854 scopus 로고    scopus 로고
    • Evaluation of the metS and murB loci for antibiotic discovery using targeted antisense RNA expression analysis in Bacillus anthracis
    • Kedar GC, Brown-Driver V, Reyes DR, et al. Evaluation of the metS and murB loci for antibiotic discovery using targeted antisense RNA expression analysis in Bacillus anthracis. Antimicrob Agents Chemother 2007;51(5):1708- 1718.
    • (2007) Antimicrob Agents Chemother , vol.51 , Issue.5 , pp. 1708-1718
    • Kedar, G.C.1    Brown-Driver, V.2    Reyes, D.R.3
  • 73
    • 33646264828 scopus 로고    scopus 로고
    • Sequencing Bacillus anthracis typing phages gamma and cherry reveals a common ancestry
    • Fouts DE, Rasko DA, Cer RZ, et al. Sequencing Bacillus anthracis typing phages gamma and cherry reveals a common ancestry. J Bacteriol 2006;188(9):3402-3408.
    • (2006) J Bacteriol , vol.188 , Issue.9 , pp. 3402-3408
    • Fouts, D.E.1    Rasko, D.A.2    Cer, R.Z.3
  • 74
    • 33750930087 scopus 로고    scopus 로고
    • Benchmarking DNA barcodes: An assessment using available primate sequences
    • Hajibabaei M, Singer GA, Hickey DA. Benchmarking DNA barcodes: an assessment using available primate sequences. Genome 2006;49(7):851-854.
    • (2006) Genome , vol.49 , Issue.7 , pp. 851-854
    • Hajibabaei, M.1    Singer, G.A.2    Hickey, D.A.3
  • 75
    • 42949114454 scopus 로고    scopus 로고
    • DNA barcoding the floras of biodiversity hotspots
    • Lahaye R, van der Bank M, Bogarin D, et al. DNA barcoding the floras of biodiversity hotspots. Proc Natl Acad Sci U S A 2008;105(8):2923-2928.
    • (2008) Proc Natl Acad Sci U S A , vol.105 , Issue.8 , pp. 2923-2928
    • Lahaye, R.1    Van Der Bank, M.2    Bogarin, D.3
  • 77
    • 51649110939 scopus 로고    scopus 로고
    • Many species in one: DNA barcoding overestimates the number of species when nuclear mitochondrial pseudogenes are coamplified
    • Song H, Buhay JE, Whiting MF, Crandall KA. Many species in one: DNA barcoding overestimates the number of species when nuclear mitochondrial pseudogenes are coamplified. Proc Natl Acad Sci U S A 2008;105(36):13486-13491.
    • (2008) Proc Natl Acad Sci U S A , vol.105 , Issue.36 , pp. 13486-13491
    • Song, H.1    Buhay, J.E.2    Whiting, M.F.3    Crandall, K.A.4
  • 78
    • 48449096999 scopus 로고    scopus 로고
    • Yeast Barcoders: A chemogenomic application of a universal donor-strain collection carrying bar-code identifiers
    • Yan Z, Costanzo M, Heisler LE, et al. Yeast Barcoders: a chemogenomic application of a universal donor-strain collection carrying bar-code identifiers. Nat Methods 2008;5(8): 719-725.
    • (2008) Nat Methods , vol.5 , Issue.8 , pp. 719-725
    • Yan, Z.1    Costanzo, M.2    Heisler, L.E.3
  • 80
    • 46249130709 scopus 로고    scopus 로고
    • The beginning of the end for microarrays?
    • Shendure J. The beginning of the end for microarrays? Nat Methods 2008;5(7):585-587.
    • (2008) Nat Methods , vol.5 , Issue.7 , pp. 585-587
    • Shendure, J.1
  • 81
    • 33845296602 scopus 로고    scopus 로고
    • Identification of an infectious progenitor for the multiple-copy HERV-K human endogenous retroelements
    • Dewannieux M, Harper F, Richaud A, et al. Identification of an infectious progenitor for the multiple-copy HERV-K human endogenous retroelements. Genome Res 2006;16(12): 1548-1556.
    • (2006) Genome Res , vol.16 , Issue.12 , pp. 1548-1556
    • Dewannieux, M.1    Harper, F.2    Richaud, A.3
  • 82
    • 33745605537 scopus 로고    scopus 로고
    • Protein engineering: Security implications. The increasing ability to manipulate protein toxins for hostile purposes has prompted calls for regulation
    • Tucker JB, Hooper C. Protein engineering: security implications. The increasing ability to manipulate protein toxins for hostile purposes has prompted calls for regulation. EMBO Rep 2006;7 Spec No:S14-17.
    • (2006) EMBO Rep , vol.7 , Issue.SPEC NO
    • Tucker, J.B.1    Hooper, C.2
  • 83
    • 67651065784 scopus 로고    scopus 로고
    • Bacterial genome analysis and its applications for infectious diseases
    • Nakagawa I. [Bacterial genome analysis and its applications for infectious diseases]. Nippon Rinsho 2009;67(6):1120-1133.
    • (2009) Nippon Rinsho , vol.67 , Issue.6 , pp. 1120-1133
    • Nakagawa, I.1
  • 84
    • 67649814527 scopus 로고    scopus 로고
    • Host-bacteria homeostasis in the healthy and inflamed gut
    • Sansonetti PJ. Host-bacteria homeostasis in the healthy and inflamed gut. Curr Opin Gastroenterol 2008;24(4):435-439.
    • (2008) Curr Opin Gastroenterol , vol.24 , Issue.4 , pp. 435-439
    • Sansonetti, P.J.1
  • 85
    • 40849126449 scopus 로고    scopus 로고
    • Host-bacterial coevolution and the search for new drug targets
    • Zaneveld J, Turnbaugh PJ, Lozupone C, et al. Host-bacterial coevolution and the search for new drug targets. Curr Opin Chem Biol 2008;12(1):109-114.
    • (2008) Curr Opin Chem Biol , vol.12 , Issue.1 , pp. 109-114
    • Zaneveld, J.1    Turnbaugh, P.J.2    Lozupone, C.3
  • 86
    • 53549118607 scopus 로고    scopus 로고
    • The metagenomics RAST server - A public resource for the automatic phylogenetic and functional analysis of metagenomes
    • Meyer F, Paarmann D, D'Souza M, et al. The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes. BMC Bioinformatics 2008;9:386.
    • (2008) BMC Bioinformatics , vol.9 , pp. 386
    • Meyer, F.1    Paarmann, D.2    D'Souza, M.3
  • 87
    • 53849111617 scopus 로고    scopus 로고
    • Evolution, population structure, and phylogeography of genetically monomorphic bacterial pathogens
    • Achtman M. Evolution, population structure, and phylogeography of genetically monomorphic bacterial pathogens. Annu Rev Microbiol 2008;62:53-70.
    • (2008) Annu Rev Microbiol , vol.62 , pp. 53-70
    • Achtman, M.1
  • 88
    • 38349175824 scopus 로고    scopus 로고
    • Global genetic population structure of Bacillus anthracis
    • Van Ert MN, Easterday WR, Huynh LY, et al. Global genetic population structure of Bacillus anthracis. PLoS One 2007;2(5):e461.
    • (2007) PLoS One , vol.2 , Issue.5
    • Van Ert, M.N.1    Easterday, W.R.2    Huynh, L.Y.3
  • 89
    • 55649110049 scopus 로고    scopus 로고
    • A simple, fast, and accurate method of phylogenomic inference
    • Wu M, Eisen JA. A simple, fast, and accurate method of phylogenomic inference. Genome Biol 2008;9(10):R151.
    • (2008) Genome Biol , vol.9 , Issue.10
    • Wu, M.1    Eisen, J.A.2
  • 90
    • 39049150896 scopus 로고    scopus 로고
    • A bacterial metapopulation adapts locally to phage predation despite global dispersal
    • Kunin V, He S, Warnecke F, et al. A bacterial metapopulation adapts locally to phage predation despite global dispersal. Genome Res 2008;18(2):293-297.
    • (2008) Genome Res , vol.18 , Issue.2 , pp. 293-297
    • Kunin, V.1    He, S.2    Warnecke, F.3
  • 91
    • 68949099565 scopus 로고    scopus 로고
    • The secret life of the anthrax agent Bacillus anthracis: Bacteriophage-mediated ecological adaptations
    • Schuch R, Fischetti VA. The secret life of the anthrax agent Bacillus anthracis: bacteriophage-mediated ecological adaptations. PLoS One 2009;4(8):e6532.
    • (2009) PLoS One , vol.4 , Issue.8
    • Schuch, R.1    Fischetti, V.A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.