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Volumn 25, Issue 2, 2010, Pages 240-249

3D-QSAR, molecular docking studies, and binding mode prediction of thiolactomycin analogs as mtFabH inhibitors

Author keywords

3D QSAR; Binding mode; Docking studies; MtFabH; Thiolactomycin analogs

Indexed keywords

3 OXOACYL ACYL CARRIER PROTEIN SYNTHASE; ENZYME INHIBITOR; THIOLACTOMYCIN;

EID: 77949471491     PISSN: 14756366     EISSN: 14756374     Source Type: Journal    
DOI: 10.3109/14756360903049059     Document Type: Conference Paper
Times cited : (8)

References (28)
  • 1
    • 65249173760 scopus 로고    scopus 로고
    • Available at
    • World Health Organization. 2008 Tuberculosis Facts. Available at http://www.who.int/tb.
    • (2008) Tuberculosis Facts
  • 2
    • 0019991218 scopus 로고
    • Thiolactomycin, a new antibiotic. I. Taxonomy of the producing organism, fermentation and biological properties
    • Oishi H, Noto T, Sasaki H, Suzuki K, Hayashi T, Okazaki H, et al. Thiolactomycin, a new antibiotic. I. Taxonomy of the producing organism, fermentation and biological properties. J Antibiot (Tokyo) 1982;35:391-395
    • (1982) J Antibiot (Tokyo) , vol.35 , pp. 391-395
    • Oishi, H.1    Noto, T.2    Sasaki, H.3    Suzuki, K.4    Hayashi, T.5    Okazaki, H.6
  • 3
    • 0035861550 scopus 로고    scopus 로고
    • Purification and biochemical characterization of the Mycobacterium tuberculosis beta-ketoacyl-acyl carrier protein synthases KasA and KasB
    • Schaeffer ML, Agnihotri G, Volker C, Kallender H, Brennan PJ, Lonsdale JT. Purification and biochemical characterization of the Mycobacterium tuberculosis beta-ketoacyl-acyl carrier protein synthases KasA and KasB. J Biol Chem 2001;276:47029-47037
    • (2001) J Biol Chem , vol.276 , pp. 47029-47037
    • Schaeffer, M.L.1    Agnihotri, G.2    Volker, C.3    Kallender, H.4    Brennan, P.J.5    Lonsdale, J.T.6
  • 4
    • 0036606073 scopus 로고    scopus 로고
    • Mycolic acid biosynthesis and enzymic characterization of the beta-ketoacyl-ACP synthase A-condensing enzyme from Mycobacterium tuberculosis
    • Kremer L, Dover LG, Carrere S, Nampoothiri KM, Lesjean S, Brown AK, et al. Mycolic acid biosynthesis and enzymic characterization of the beta-ketoacyl-ACP synthase A-condensing enzyme from Mycobacterium tuberculosis. Biochem J 2002;364:423-430
    • (2002) Biochem J , vol.364 , pp. 423-430
    • Kremer, L.1    Dover, L.G.2    Carrere, S.3    Nampoothiri, K.M.4    Lesjean, S.5    Brown, A.K.6
  • 5
    • 0141433395 scopus 로고    scopus 로고
    • Biphenyl-based analogues of thiolactomycin, active against Mycobacterium tuberculosis mtFabH fatty acid condensing enzyme
    • Senior SJ, Illarionov PA, Gurcha SS, Campbell IB, Schaeffer ML, Minnikin DE, et al. Biphenyl-based analogues of thiolactomycin, active against Mycobacterium tuberculosis mtFabH fatty acid condensing enzyme. Bioorg Med Chem Lett 2003;13:3685-3688
    • (2003) Bioorg Med Chem Lett , vol.13 , pp. 3685-3688
    • Senior, S.J.1    Illarionov, P.A.2    Gurcha, S.S.3    Campbell, I.B.4    Schaeffer, M.L.5    Minnikin, D.E.6
  • 6
    • 0346729872 scopus 로고    scopus 로고
    • Acetylene-based analogues of thiolactomycin, active against Mycobacterium tuberculosis mtFabH fatty acid condensing enzyme
    • Senior SJ, Illarionov PA, Gurcha SS, Campbell IB, Schaeffer ML, Minnikin DE, et al. Acetylene-based analogues of thiolactomycin, active against Mycobacterium tuberculosis mtFabH fatty acid condensing enzyme. Bioorg Med Chem Lett 2004;14:373-376
    • (2004) Bioorg Med Chem Lett , vol.14 , pp. 373-376
    • Senior, S.J.1    Illarionov, P.A.2    Gurcha, S.S.3    Campbell, I.B.4    Schaeffer, M.L.5    Minnikin, D.E.6
  • 7
    • 15044344526 scopus 로고    scopus 로고
    • Antitubercular agents Part 2: New thiolactomycin analogues active against Mycobacterium tuberculosis
    • Kamal A, Shaik AA, Sinha R, Yadava JS, Arora SK. Antitubercular agents. Part 2: new thiolactomycin analogues active against Mycobacterium tuberculosis. Bioorg Med Chem Lett 2005;15:1927-1929
    • (2005) Bioorg Med Chem Lett , vol.15 , pp. 1927-1929
    • Kamal, A.1    Shaik, A.A.2    Sinha, R.3    Yadava, J.S.4    Arora, S.K.5
  • 8
    • 30444441272 scopus 로고    scopus 로고
    • Structure-activity relationships at the 5-position of thiolactomycin: An intact (5R)-isoprene unit is required for activity against the condensing enzymes from Mycobacterium tuberculosis and Escherichia coli
    • Kim P, Zhang YM, Shenoy G, Nguyen QA, Boshoff HI, Manjunatha UH, et al. Structure-activity relationships at the 5-position of thiolactomycin: an intact (5R)-isoprene unit is required for activity against the condensing enzymes from Mycobacterium tuberculosis and Escherichia coli. J Med Chem 2006;49:159-171
    • (2006) J Med Chem , vol.49 , pp. 159-171
    • Kim, P.1    Zhang, Y.M.2    Shenoy, G.3    Nguyen, Q.A.4    Boshoff, H.I.5    Manjunatha, U.H.6
  • 10
    • 0023751431 scopus 로고
    • Comparative molecular field analysis (CoMFA). 1. Effect of shape on binding of steroids to carrier proteins
    • Cramer RD, Patterson DE, Bunce JD. Comparative molecular field analysis (CoMFA). 1. Effect of shape on binding of steroids to carrier proteins. J Am Chem Soc 1988;110:5959-5967
    • (1988) J Am Chem Soc , vol.110 , pp. 5959-5967
    • Cramer, R.D.1    Patterson, D.E.2    Bunce, J.D.3
  • 11
    • 0027944195 scopus 로고
    • Molecular similarity indices in a comparative analysis (CoMSIA) of drug molecules to correlate and predict their biological activity
    • Klebe G, Abraham U, Mietzner T. Molecular similarity indices in a comparative analysis (CoMSIA) of drug molecules to correlate and predict their biological activity. J Med Chem 1994;37:4130-4146
    • (1994) J Med Chem , vol.37 , pp. 4130-4146
    • Klebe, G.1    Abraham, U.2    Mietzner, T.3
  • 12
    • 33749245117 scopus 로고    scopus 로고
    • Prediction of protein-ligand interactions. Docking and scoring: Successes and gaps
    • Leach AR, Shoichet BK, Peishoff CE. Prediction of protein-ligand interactions. Docking and scoring: successes and gaps. J Med Chem 2006;49:5851-5855
    • (2006) J Med Chem , vol.49 , pp. 5851-5855
    • Leach, A.R.1    Shoichet, B.K.2    Peishoff, C.E.3
  • 14
    • 0035827542 scopus 로고    scopus 로고
    • Crystal structure of the Mycobacterium tuberculosis beta-ketoacyl-acyl carrier protein synthase III
    • Scarsdale JN, Kazanina G, He X, Reynolds KA, Wright HT. Crystal structure of the Mycobacterium tuberculosis beta-ketoacyl-acyl carrier protein synthase III. J Biol Chem 2001;276:20516-20522
    • (2001) J Biol Chem , vol.276 , pp. 20516-20522
    • Scarsdale, J.N.1    Kazanina, G.2    He, X.3    Reynolds, K.A.4    Wright, H.T.5
  • 16
    • 85164278893 scopus 로고
    • Partial least squares analysis with cross-validation for the two-class problem: A Monte Carlo study
    • Stahle L, Wold S. Partial least squares analysis with cross-validation for the two-class problem: a Monte Carlo study. J Chemom 1987;1:185-196
    • (1987) J Chemom , vol.1 , pp. 185-196
    • Stahle, L.1    Wold, S.2
  • 17
    • 84987100711 scopus 로고
    • Crossvalidation, bootstrapping, and partial least squares compared with multiple regression in conventional QSAR studies
    • Cramer RD, Bunce JD, Patterson DE. Crossvalidation, bootstrapping, and partial least squares compared with multiple regression in conventional QSAR studies. Quant Struct Act Relat 1988;7:18-25.
    • (1988) Quant Struct Act Relat , vol.7 , pp. 18-25
    • Cramer, R.D.1    Bunce, J.D.2    Patterson, D.E.3
  • 18
    • 0034089732 scopus 로고    scopus 로고
    • QSAR and CoMFA: A perspective on the practical application to drug discovery
    • Podlogar BL, Ferguson DM. QSAR and CoMFA: a perspective on the practical application to drug discovery. Drug Des Discov 2000;17:4-12.
    • (2000) Drug des Discov , vol.17 , pp. 4-12
    • Podlogar, B.L.1    Ferguson, D.M.2
  • 19
    • 0031552362 scopus 로고    scopus 로고
    • Development and validation of a genetic algorithm for flexible docking
    • Jones G, Willett P, Glen RC, Leach AR, Taylor R. Development and validation of a genetic algorithm for flexible docking. J Mol Biol 1997;267:727-748
    • (1997) J Mol Biol , vol.267 , pp. 727-748
    • Jones, G.1    Willett, P.2    Glen, R.C.3    Leach, A.R.4    Taylor, R.5
  • 20
    • 1642540577 scopus 로고    scopus 로고
    • Evaluation of docking performance: Comparative data on docking algorithms
    • Kontoyianni M, McClellan LM, Sokol GS. Evaluation of docking performance: comparative data on docking algorithms. J Med Chem 2004;47:558-565
    • (2004) J Med Chem , vol.47 , pp. 558-565
    • Kontoyianni, M.1    McClellan, L.M.2    Sokol, G.S.3
  • 21
    • 0031226772 scopus 로고    scopus 로고
    • Empirical scoring functions I. The development of a fast empirical scoring function to estimate the binding affinity of ligands in receptor complexes
    • Eldridge MD, Murray CW, Auton TR, Paolini GV, Mee RP. Empirical scoring functions: I. The development of a fast empirical scoring function to estimate the binding affinity of ligands in receptor complexes. J Comput Aided Mol Des 1997;11:425-445
    • (1997) J Comput Aided Mol des , Issue.11 , pp. 425-445
    • Eldridge, M.D.1    Murray, C.W.2    Auton, T.R.3    Paolini, G.V.4    Mee, R.P.5
  • 22
    • 0035794127 scopus 로고    scopus 로고
    • Inhibition of beta-ketoacyl-acyl carrier protein synthases by thiolactomycin and cerulenin. Structure and mechanism
    • Price AC, Choi KH, Heath RJ, Li Z, White SW, Rock CO. Inhibition of beta-ketoacyl-acyl carrier protein synthases by thiolactomycin and cerulenin. Structure and mechanism. J Biol Chem 2001;276:6551-6559
    • (2001) J Biol Chem , vol.276 , pp. 6551-6559
    • Price, A.C.1    Choi, K.H.2    Heath, R.J.3    Li, Z.4    White, S.W.5    Rock, C.O.6
  • 23
    • 33846412588 scopus 로고    scopus 로고
    • X-ray crystal structure of Mycobacterium tuberculosis beta-ketoacyl acyl carrier protein synthase II (mtKasB)
    • Sridharan S, Wang L, Brown AK, Dover LG, Kremer L, Besra GS, et al. X-ray crystal structure of Mycobacterium tuberculosis beta-ketoacyl acyl carrier protein synthase II (mtKasB). J Mol Biol 2007;366:469-480
    • (2007) J Mol Biol , vol.366 , pp. 469-480
    • Sridharan, S.1    Wang, L.2    Brown, A.K.3    Dover, L.G.4    Kremer, L.5    Besra, G.S.6
  • 24
    • 0034804919 scopus 로고    scopus 로고
    • Lipid biosynthesis as a target for antibacterial agents
    • Heath RJ, White SW, Rock CO. Lipid biosynthesis as a target for antibacterial agents. Prog Lipid Res 2001;40:467-497
    • (2001) Prog Lipid Res , vol.40 , pp. 467-497
    • Heath, R.J.1    White, S.W.2    Rock, C.O.3
  • 25
    • 33846645298 scopus 로고    scopus 로고
    • Synthesis and biological evaluation of thiazolidine-2-one 1,1-dioxide as inhibitors of Escherichia coli betaketoacyl- ACP-synthase III (FabH)
    • Alhamadsheh MM, Waters NC, Huddler DP, Kreishman-Deitrick M, Florova G, Reynolds KA. Synthesis and biological evaluation of thiazolidine-2-one 1,1-dioxide as inhibitors of Escherichia coli betaketoacyl- ACP-synthase III (FabH). Bioorg Med Chem Lett 2007;17:879-883
    • (2007) Bioorg Med Chem Lett , vol.17 , pp. 879-883
    • Alhamadsheh, M.M.1    Waters, N.C.2    Huddler, D.P.3    Kreishman-Deitrick, M.4    Florova, G.5    Reynolds, K.A.6
  • 26
    • 77949455829 scopus 로고    scopus 로고
    • Available at
    • Inte:Ligand. LigandScout ver. 2.0. Available at www.inteligand.com.
    • LigandScout Ver. 2.0
  • 27
    • 40049109991 scopus 로고    scopus 로고
    • Bacterial beta-ketoacyl-acyl carrier protein synthase III (FabH): An attractive target for the design of new broadspectrum antimicrobial agents
    • Castillo YP, Perez MA. Bacterial beta-ketoacyl-acyl carrier protein synthase III (FabH): an attractive target for the design of new broadspectrum antimicrobial agents. Mini Rev Med Chem 2008;8:36-45.
    • (2008) Mini Rev Med Chem , vol.8 , pp. 36-45
    • Castillo, Y.P.1    Perez, M.A.2
  • 28
    • 34347219762 scopus 로고    scopus 로고
    • Isolation and structure of platencin: A FabH and FabF dual inhibitor with potent broad-spectrum antibiotic activity
    • Jayasuriya H, Herath KB, Zhang C, Zink DL, Basilio A, Genilloud O, et al. Isolation and structure of platencin: a FabH and FabF dual inhibitor with potent broad-spectrum antibiotic activity. Angew Chem Int Ed Engl 2007;46:4684-4688
    • (2007) Angew Chem Int Ed Engl , vol.46 , pp. 4684-4688
    • Jayasuriya, H.1    Herath, K.B.2    Zhang, C.3    Zink, D.L.4    Basilio, A.5    Genilloud, O.6


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