메뉴 건너뛰기




Volumn 17, Issue 17, 1998, Pages 5095-5102

Transcription through a simple DNA repeat blocks replication elongation

Author keywords

Elongation; Replication; Simple sequence repeats; Termination; Transcription

Indexed keywords

REPETITIVE DNA; RNA POLYMERASE;

EID: 0032167384     PISSN: 02614189     EISSN: None     Source Type: Journal    
DOI: 10.1093/emboj/17.17.5095     Document Type: Article
Times cited : (78)

References (45)
  • 1
    • 0023737220 scopus 로고
    • Studies on the mechanisms of Escherichia coli DNA polymerase I large fragment. Effect of template sequence and substrate variation on termination of synthesis
    • Abbotts, J., SenGupta, D.N., Zon, G. and Wilson, S.H. (1988) Studies on the mechanisms of Escherichia coli DNA polymerase I large fragment. Effect of template sequence and substrate variation on termination of synthesis. J. Biol. Chem., 263, 15094-15103.
    • (1988) J. Biol. Chem. , vol.263 , pp. 15094-15103
    • Abbotts, J.1    SenGupta, D.N.2    Zon, G.3    Wilson, S.H.4
  • 2
    • 0023777735 scopus 로고
    • Tightly regulated tac promoter vectors useful for the expression of unfused and fused proteins in Escherichia coli
    • Aman, E., Ochs, B. and Abel, K.-J. (1988) Tightly regulated tac promoter vectors useful for the expression of unfused and fused proteins in Escherichia coli. Gene, 69, 301-315.
    • (1988) Gene , vol.69 , pp. 301-315
    • Aman, E.1    Ochs, B.2    Abel, K.-J.3
  • 5
    • 0024458717 scopus 로고
    • Sequence-specific pausing during in vitro DNA replication on double stranded DNA templates
    • Bedinger, P., Munn, M. and Alberts, B.M. (1989) Sequence-specific pausing during in vitro DNA replication on double stranded DNA templates. J. Biol. Chem., 264, 16880-16886.
    • (1989) J. Biol. Chem. , vol.264 , pp. 16880-16886
    • Bedinger, P.1    Munn, M.2    Alberts, B.M.3
  • 6
    • 0030789980 scopus 로고    scopus 로고
    • Transcription increases the deletion frequency of long CTG·CAG triplet repeats from plasmids in Escherichia coli
    • Bowater, R.K., Jaworski, A., Larson, J.E., Parniewski, P. and Wells, R.D. (1997) Transcription increases the deletion frequency of long CTG·CAG triplet repeats from plasmids in Escherichia coli. Nucleic Acids Res., 25, 2861-2868.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 2861-2868
    • Bowater, R.K.1    Jaworski, A.2    Larson, J.E.3    Parniewski, P.4    Wells, R.D.5
  • 7
    • 0023646792 scopus 로고
    • The localization of replication origins on ARS plasmids in S.cerevisiae
    • Brewer, B.J. and Fangman, W.L. (1987) The localization of replication origins on ARS plasmids in S.cerevisiae. Cell, 51, 463-471.
    • (1987) Cell , vol.51 , pp. 463-471
    • Brewer, B.J.1    Fangman, W.L.2
  • 8
    • 0025731987 scopus 로고
    • Position and orientation-dependent effects of a eukaryotic Z-triplex DNA motif on episomal DNA replication in COS-7 cells
    • Brinton, B.T., Caddle, M.S. and Heintz, N.H. (1991) Position and orientation-dependent effects of a eukaryotic Z-triplex DNA motif on episomal DNA replication in COS-7 cells. J. Biol. Chem., 266, 5153-5161.
    • (1991) J. Biol. Chem. , vol.266 , pp. 5153-5161
    • Brinton, B.T.1    Caddle, M.S.2    Heintz, N.H.3
  • 9
    • 0019513663 scopus 로고
    • Gene organization and primary structure of a ribosomal RNA operon from Escherichia coli
    • Brosius, J., Dull, T.D., Sleeter, D.D. and Noller, H.F. (1981) Gene organization and primary structure of a ribosomal RNA operon from Escherichia coli. J. Mol. Biol., 148, 107-127.
    • (1981) J. Mol. Biol. , vol.148 , pp. 107-127
    • Brosius, J.1    Dull, T.D.2    Sleeter, D.D.3    Noller, H.F.4
  • 10
    • 0015333294 scopus 로고
    • Nature of Col E1 plasmid replication in Escherichia coli in the presence of chloramphenicol
    • Clewell, D.B. (1972) Nature of Col E1 plasmid replication in Escherichia coli in the presence of chloramphenicol. J. Bacteriol., 110, 667-676.
    • (1972) J. Bacteriol. , vol.110 , pp. 667-676
    • Clewell, D.B.1
  • 11
    • 0031008401 scopus 로고    scopus 로고
    • Characteristic enrichment of DNA repeats in different genomes
    • Cox, R. and Mirkin, S.M. (1997) Characteristic enrichment of DNA repeats in different genomes. Proc. Natl Acad. Sci. USA, 94, 5237-5242.
    • (1997) Proc. Natl Acad. Sci. USA , vol.94 , pp. 5237-5242
    • Cox, R.1    Mirkin, S.M.2
  • 12
    • 0026466862 scopus 로고
    • Intramolecular DNA triplexes: Unusual sequence requirements and influence on DNA polymerization
    • Dayn, A., Samadashwily, G.M. and Mirkin, S.M. (1992) Intramolecular DNA triplexes: unusual sequence requirements and influence on DNA polymerization. Proc. Natl Acad. Sci. USA, 89, 11406-11410.
    • (1992) Proc. Natl Acad. Sci. USA , vol.89 , pp. 11406-11410
    • Dayn, A.1    Samadashwily, G.M.2    Mirkin, S.M.3
  • 13
    • 0016695496 scopus 로고
    • Regulation of the expression of ribosomal protein genes in Escherichia coli
    • Dennis, P.P. and Nomura, M. (1975) Regulation of the expression of ribosomal protein genes in Escherichia coli. J. Mol. Biol., 97, 61-76.
    • (1975) J. Mol. Biol. , vol.97 , pp. 61-76
    • Dennis, P.P.1    Nomura, M.2
  • 14
    • 0029740114 scopus 로고    scopus 로고
    • DNA replication fork pause sites dependent on transcription
    • Deshpande, A.M. and Newlon, C.S. (1996) DNA replication fork pause sites dependent on transcription. Science, 272, 1030-1033.
    • (1996) Science , vol.272 , pp. 1030-1033
    • Deshpande, A.M.1    Newlon, C.S.2
  • 15
    • 0026733965 scopus 로고
    • Consequences of replication fork movement through transcription units in vivo
    • French, S. (1992) Consequences of replication fork movement through transcription units in vivo. Science, 258, 1362-1365.
    • (1992) Science , vol.258 , pp. 1362-1365
    • French, S.1
  • 16
    • 0028851598 scopus 로고
    • Analysis of replication intermediates by two-dimensional agarose gel electrophoresis
    • Friedman, K.L. and Brewer, B.J. (1995) Analysis of replication intermediates by two-dimensional agarose gel electrophoresis. Methods Enzymol., 262, 613-627.
    • (1995) Methods Enzymol. , vol.262 , pp. 613-627
    • Friedman, K.L.1    Brewer, B.J.2
  • 17
    • 0028314257 scopus 로고
    • Transcription, topoisomerases and recombination
    • Gangloff, S., Lieber, M.R. and Rothstein, R. (1994) Transcription, topoisomerases and recombination. Experientia, 50, 261-269.
    • (1994) Experientia , vol.50 , pp. 261-269
    • Gangloff, S.1    Lieber, M.R.2    Rothstein, R.3
  • 18
    • 0028929024 scopus 로고
    • A long purine-pyrimidine homopolymer acts as a transcriptional diode
    • Grabczyk, E. and Fishman, M.C. (1995) A long purine-pyrimidine homopolymer acts as a transcriptional diode. J. Biol. Chem., 270, 1791-1797.
    • (1995) J. Biol. Chem. , vol.270 , pp. 1791-1797
    • Grabczyk, E.1    Fishman, M.C.2
  • 19
    • 0028147234 scopus 로고
    • The rapid dissociation of the T4 DNA polymerase holoenzyme when stopped by a DNA hairpin helix. A model for polymerase release following the termination of each Okazaki fragment
    • Hacker, K.J. and Alberts, B.M. (1994) The rapid dissociation of the T4 DNA polymerase holoenzyme when stopped by a DNA hairpin helix. A model for polymerase release following the termination of each Okazaki fragment. J. Biol. Chem., 269, 24221-24228.
    • (1994) J. Biol. Chem. , vol.269 , pp. 24221-24228
    • Hacker, K.J.1    Alberts, B.M.2
  • 20
    • 0026794488 scopus 로고
    • Arrest of bacterial DNA replication
    • Hill, T.M. (1992) Arrest of bacterial DNA replication. Annu. Rev. Microbiol., 46, 603-633.
    • (1992) Annu. Rev. Microbiol. , vol.46 , pp. 603-633
    • Hill, T.M.1
  • 21
    • 0024411850 scopus 로고
    • Tetracycline promoter mutations decrease non-B DNA structural transitions, negative linking differences and deletions in recombinant plasmids in Escherichia coli
    • Jaworski, A., Blaho, J.A., Larson, J.E., Shimizu, M. and Wells, R.D. (1989) Tetracycline promoter mutations decrease non-B DNA structural transitions, negative linking differences and deletions in recombinant plasmids in Escherichia coli. J. Mol. Biol., 207, 513-526.
    • (1989) J. Mol. Biol. , vol.207 , pp. 513-526
    • Jaworski, A.1    Blaho, J.A.2    Larson, J.E.3    Shimizu, M.4    Wells, R.D.5
  • 22
    • 0028076016 scopus 로고
    • Instability of plasmid DNA maintenance caused by transcription of poly(dT)-containing sequences in Escherichia coli
    • Kiyama, R. and Oishi, M. (1994) Instability of plasmid DNA maintenance caused by transcription of poly(dT)-containing sequences in Escherichia coli. Gene, 150, 57-61.
    • (1994) Gene , vol.150 , pp. 57-61
    • Kiyama, R.1    Oishi, M.2
  • 23
    • 0029910940 scopus 로고    scopus 로고
    • In vitro transcription of a poly(dA)·poly(dT)-containing sequence is inhibited by interaction between the template and its transcripts
    • Kiyama, R. and Oishi, M. (1996) In vitro transcription of a poly(dA)·poly(dT)-containing sequence is inhibited by interaction between the template and its transcripts. Nucleic Acids Res., 24, 4577-4583.
    • (1996) Nucleic Acids Res. , vol.24 , pp. 4577-4583
    • Kiyama, R.1    Oishi, M.2
  • 24
    • 0026610736 scopus 로고
    • Intramolecular dG·dCdC triplex detected in Escherichia coli cells
    • Kohwi, Y., Malkhosyan, S.R. and Kohwi-Shigematsu, T. (1992) Intramolecular dG·dCdC triplex detected in Escherichia coli cells. J. Mol. Biol., 223, 817-822.
    • (1992) J. Mol. Biol. , vol.223 , pp. 817-822
    • Kohwi, Y.1    Malkhosyan, S.R.2    Kohwi-Shigematsu, T.3
  • 28
    • 0028908039 scopus 로고
    • Head-on collision between a DNA replication apparatus and RNA
    • Liu, B. and Alberts, B.M. (1995) Head-on collision between a DNA replication apparatus and RNA. Science, 267, 1131-1137.
    • (1995) Science , vol.267 , pp. 1131-1137
    • Liu, B.1    Alberts, B.M.2
  • 29
    • 0027443441 scopus 로고
    • The DNA replication fork can pass RNA polymerase without displacing the nascent transcript
    • Liu, B., Wong, M.L., Tinker, R.L., Geiduschek, E.P. and Alberts, B.M. (1993) The DNA replication fork can pass RNA polymerase without displacing the nascent transcript. Nature, 366, 33-39.
    • (1993) Nature , vol.366 , pp. 33-39
    • Liu, B.1    Wong, M.L.2    Tinker, R.L.3    Geiduschek, E.P.4    Alberts, B.M.5
  • 30
    • 0026777126 scopus 로고
    • Prokaryotic DNA replication
    • Marians, K.J. (1992) Prokaryotic DNA replication. Annu. Rev. Biochem., 61, 673-719.
    • (1992) Annu. Rev. Biochem. , vol.61 , pp. 673-719
    • Marians, K.J.1
  • 31
    • 0025863843 scopus 로고
    • Unidirectional replication as visualised by two-dimensional agarose gel electrophoresis
    • Martin-Parras, L., Hernandez, P., Martinez-Robles, M. and Schvartzman, J.B. (1991) Unidirectional replication as visualised by two-dimensional agarose gel electrophoresis. J. Mol. Biol., 220, 843-855.
    • (1991) J. Mol. Biol. , vol.220 , pp. 843-855
    • Martin-Parras, L.1    Hernandez, P.2    Martinez-Robles, M.3    Schvartzman, J.B.4
  • 32
    • 0028329734 scopus 로고
    • Pausing of simian virus 40 DNA replication fork movement in vivo by (dG-dA)n·(dT-dC)n tracts
    • Rao, B.S. (1994) Pausing of simian virus 40 DNA replication fork movement in vivo by (dG-dA)n·(dT-dC)n tracts. Gene, 140, 233-237.
    • (1994) Gene , vol.140 , pp. 233-237
    • Rao, B.S.1
  • 34
    • 0025225502 scopus 로고
    • Induction of RNA-stabilized DNA conformers by transcription of an immuniglobulin switch region
    • Reaban, M.E. and Griffin, J.A. (1990) Induction of RNA-stabilized DNA conformers by transcription of an immuniglobulin switch region. Nature, 348, 342-344.
    • (1990) Nature , vol.348 , pp. 342-344
    • Reaban, M.E.1    Griffin, J.A.2
  • 35
    • 0028106344 scopus 로고
    • Transciption induces the formation of a stable RNA·DNA hybrid in the immunoglobulin a switch region
    • Reaban, M.E., Lebowitz, J. and Griffin, J.A. (1994) Transciption induces the formation of a stable RNA·DNA hybrid in the immunoglobulin A switch region. J. Biol. Chem., 269, 21850-21857.
    • (1994) J. Biol. Chem. , vol.269 , pp. 21850-21857
    • Reaban, M.E.1    Lebowitz, J.2    Griffin, J.A.3
  • 36
    • 0028907534 scopus 로고
    • Antiparallel, intramolecular triplex DNA stimulates homologous recombination in human cells
    • Rooney, S.M. and Moore, P.D. (1995) Antiparallel, intramolecular triplex DNA stimulates homologous recombination in human cells. Proc. Natl Acad. Sci. USA, 92, 2141-2144.
    • (1995) Proc. Natl Acad. Sci. USA , vol.92 , pp. 2141-2144
    • Rooney, S.M.1    Moore, P.D.2
  • 37
    • 0030725454 scopus 로고    scopus 로고
    • Trinucleotide repeats affect DNA replication in vivo
    • Samadashwily, G.M., Raca, G. and Mirkin, S.M. (1997) Trinucleotide repeats affect DNA replication in vivo. Nature Genet., 17, 298-304.
    • (1997) Nature Genet. , vol.17 , pp. 298-304
    • Samadashwily, G.M.1    Raca, G.2    Mirkin, S.M.3
  • 38
    • 0020480604 scopus 로고
    • Nucleotide sequence and properties of the murine gamma 3 immunoglobulin heavy chain gene switch region: Implication for successive C gamma gene switching
    • Stanton, L.W. and Marcu, K.B. (1982) Nucleotide sequence and properties of the murine gamma 3 immunoglobulin heavy chain gene switch region: implication for successive C gamma gene switching. Nucleic Acids Res., 10, 5993-6006.
    • (1982) Nucleic Acids Res. , vol.10 , pp. 5993-6006
    • Stanton, L.W.1    Marcu, K.B.2
  • 41
    • 0031008221 scopus 로고    scopus 로고
    • Basic mechanisms of transcript elongation and its regulation
    • Uptain, S.M., Kane, C.M. and Chamberlin, M.J. (1997) Basic mechanisms of transcript elongation and its regulation. Annu. Rev. Biochem., 66, 117-172.
    • (1997) Annu. Rev. Biochem. , vol.66 , pp. 117-172
    • Uptain, S.M.1    Kane, C.M.2    Chamberlin, M.J.3
  • 42
    • 0028874391 scopus 로고
    • CGG repeats associated with DNA instability and chromosome fragility from structures that block DNA synthesis in vitro
    • Usdin, K. and Woodford, K.J. (1995) CGG repeats associated with DNA instability and chromosome fragility from structures that block DNA synthesis in vitro. Nucleic Acids Res., 23, 4202-4209.
    • (1995) Nucleic Acids Res. , vol.23 , pp. 4202-4209
    • Usdin, K.1    Woodford, K.J.2
  • 43
    • 0025190946 scopus 로고
    • Hypervariable minisatellite DNA is a hotspot for homologous recombination in human cells
    • Wahls, W.P., Wallace, L. and Moore, P.D. (1990) Hypervariable minisatellite DNA is a hotspot for homologous recombination in human cells. Cell, 60, 95-103.
    • (1990) Cell , vol.60 , pp. 95-103
    • Wahls, W.P.1    Wallace, L.2    Moore, P.D.3
  • 44
    • 0029808213 scopus 로고    scopus 로고
    • The development and use of a DNA polymerase arrest assay for the evaluation of parameters affecting intrastrand tetraplex formation
    • Weitzmann, M.N., Woodford, K.J. and Usdin, K. (1996) The development and use of a DNA polymerase arrest assay for the evaluation of parameters affecting intrastrand tetraplex formation. J. Biol. Chem., 271, 20958-20964.
    • (1996) J. Biol. Chem. , vol.271 , pp. 20958-20964
    • Weitzmann, M.N.1    Woodford, K.J.2    Usdin, K.3
  • 45
    • 0027971685 scopus 로고
    • A novel K(+)-dependent DNA synthesis arrest site in a commonly occurring sequence motif in eukaryotes
    • Woodford, K.J., Howell, R.M. and Usdin, K. (1994) A novel K(+)-dependent DNA synthesis arrest site in a commonly occurring sequence motif in eukaryotes. J. Biol. Chem., 269, 27029-27035.
    • (1994) J. Biol. Chem. , vol.269 , pp. 27029-27035
    • Woodford, K.J.1    Howell, R.M.2    Usdin, K.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.