-
1
-
-
0028952966
-
Replication arrest
-
Baker, T.A. (1995) Replication arrest. Cell, 80, 521-524.
-
(1995)
Cell
, vol.80
, pp. 521-524
-
-
Baker, T.A.1
-
2
-
-
0023237183
-
In vivo transcription of bacteriophage φ29 DNA: Transcription termination
-
Barthelemy, I., Salas, M. and Mellado, R.P. (1987) In vivo transcription of bacteriophage φ29 DNA: transcription termination. J. Virol., 61, 1751-1755.
-
(1987)
J. Virol.
, vol.61
, pp. 1751-1755
-
-
Barthelemy, I.1
Salas, M.2
Mellado, R.P.3
-
3
-
-
0029879312
-
Relating structure to function in φ29 DNA polymerase
-
Blanco, L. and Salas, M. (1996) Relating structure to function in φ29 DNA polymerase. J. Biol. Chem., 271, 8509-8512.
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 8509-8512
-
-
Blanco, L.1
Salas, M.2
-
4
-
-
0024335104
-
Highly efficient DNA synthesis by the phage φ29 DNA polymerase. Symmetrical mode of DNA replication
-
Blanco, L., Bernad, A., Lázaro, J.M., Martín, G., Garmendia, C. and Salas, M. (1989) Highly efficient DNA synthesis by the phage φ29 DNA polymerase. Symmetrical mode of DNA replication. J. Biol. Chem., 264, 8935-8940.
-
(1989)
J. Biol. Chem.
, vol.264
, pp. 8935-8940
-
-
Blanco, L.1
Bernad, A.2
Lázaro, J.M.3
Martín, G.4
Garmendia, C.5
Salas, M.6
-
5
-
-
0026547349
-
DNA-independent deoxynucleotidylation of the φ29 terminal protein by the DNA polymerase
-
Blanco, L., Bernad, A., Esteban, J.A. and Salas, M. (1992) DNA-independent deoxynucleotidylation of the φ29 terminal protein by the DNA polymerase. J. Biol. Chem., 267, 1225-1230.
-
(1992)
J. Biol. Chem.
, vol.267
, pp. 1225-1230
-
-
Blanco, L.1
Bernad, A.2
Esteban, J.A.3
Salas, M.4
-
6
-
-
0024276903
-
When polymerases collide: Replication and the transcriptional organization of the E.coli chromosome
-
Brewer, B.J. (1988) When polymerases collide: replication and the transcriptional organization of the E.coli chromosome. Cell, 53, 679-686.
-
(1988)
Cell
, vol.53
, pp. 679-686
-
-
Brewer, B.J.1
-
7
-
-
0022247421
-
Interaction of RNA polymerase with lacUV5 promoter DNA during mRNA initiation and elongation. Footprinting, methylation and rifampicin-sensitivity changes accompanying transcription initiation
-
Carpousis, A.J. and Gralla, J.D. (1985) Interaction of RNA polymerase with lacUV5 promoter DNA during mRNA initiation and elongation. Footprinting, methylation and rifampicin-sensitivity changes accompanying transcription initiation. J. Mol. Biol., 183, 165-177.
-
(1985)
J. Mol. Biol.
, vol.183
, pp. 165-177
-
-
Carpousis, A.J.1
Gralla, J.D.2
-
8
-
-
0027106595
-
New models for the mechanism of transcription elongation and its regulation
-
Chamberlin, M.J. (1994) New models for the mechanism of transcription elongation and its regulation. Harvey Lect., 88, 1-21.
-
(1994)
Harvey Lect.
, vol.88
, pp. 1-21
-
-
Chamberlin, M.J.1
-
9
-
-
0027321585
-
Control of transcription termination by RNA-binding proteins
-
Das, A. (1993) Control of transcription termination by RNA-binding proteins. Annu. Rev. Biochem., 62, 893-930.
-
(1993)
Annu. Rev. Biochem.
, vol.62
, pp. 893-930
-
-
Das, A.1
-
10
-
-
0029740114
-
DNA replication fork pause sites dependent on transcription
-
Deshpande, A.M. and Newlon, C.S. (1996) DNA replication fork pause sites dependent on transcription. Science, 272, 1030-1033.
-
(1996)
Science
, vol.272
, pp. 1030-1033
-
-
Deshpande, A.M.1
Newlon, C.S.2
-
11
-
-
1842377482
-
Bacteriophage φ29 DNA replication arrest caused by codirectional collisions with the transcription machinery
-
Elías-Arnanz, M. and Salas, M. (1997) Bacteriophage φ29 DNA replication arrest caused by codirectional collisions with the transcription machinery. EMBO J., 16, 5775-5783.
-
(1997)
EMBO J.
, vol.16
, pp. 5775-5783
-
-
Elías-Arnanz, M.1
Salas, M.2
-
12
-
-
0026733965
-
Consequences of replication fork movement through transcription units in vivo
-
French, S. (1992) Consequences of replication fork movement through transcription units in vivo. Science, 258, 1362-1365.
-
(1992)
Science
, vol.258
, pp. 1362-1365
-
-
French, S.1
-
13
-
-
0028147234
-
The rapid dissociation of the T4 DNA polymerase holoenzyme when stopped by a DNA hairpin helix. A model for polymerase release following the termination of each Okazaki fragment
-
Hacker, K.J. and Alberts, B.M. (1994) The rapid dissociation of the T4 DNA polymerase holoenzyme when stopped by a DNA hairpin helix. A model for polymerase release following the termination of each Okazaki fragment. J. Biol. Chem., 269, 24221-24228.
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 24221-24228
-
-
Hacker, K.J.1
Alberts, B.M.2
-
14
-
-
0026794488
-
Arrest of bacterial DNA replication
-
Hill, T.M. (1992) Arrest of bacterial DNA replication. Annu. Rev. Microbiol., 46, 603-633.
-
(1992)
Annu. Rev. Microbiol.
, vol.46
, pp. 603-633
-
-
Hill, T.M.1
-
15
-
-
0030844557
-
Mechanisms of triplex-caused polymerization arrest
-
Krasilnikov, A.S., Panyutin, I.G., Samadashwily, G.M., Cox, R., Lazurkin, Y.S. and Mirkin, S.M. (1997) Mechanisms of triplex-caused polymerization arrest. Nucleic Acids Res., 25, 1339-1346.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 1339-1346
-
-
Krasilnikov, A.S.1
Panyutin, I.G.2
Samadashwily, G.M.3
Cox, R.4
Lazurkin, Y.S.5
Mirkin, S.M.6
-
16
-
-
0032167384
-
Transcription through a simple DNA repeat blocks replication elongation
-
Krasilnikova, M.M., Samadashwily, G.M., Krasilnikov, A.S. and Mirkin, S.M. (1998) Transcription through a simple DNA repeat blocks replication elongation. EMBO J., 17, 5095-5102.
-
(1998)
EMBO J.
, vol.17
, pp. 5095-5102
-
-
Krasilnikova, M.M.1
Samadashwily, G.M.2
Krasilnikov, A.S.3
Mirkin, S.M.4
-
17
-
-
0024974056
-
RNA chain initiation by Escherichia coli RNA polymerase. Structural transitions of the enzyme in early ternary complexes
-
Krummel, B. and Chamberlin, M.J. (1989) RNA chain initiation by Escherichia coli RNA polymerase. Structural transitions of the enzyme in early ternary complexes. Biochemistry, 28, 7829-7842.
-
(1989)
Biochemistry
, vol.28
, pp. 7829-7842
-
-
Krummel, B.1
Chamberlin, M.J.2
-
18
-
-
0026708877
-
Structural analysis of ternary complexes of Escherichia coli RNA polymerase. Individual complexes halted along different transcription units have distinct and unexpected biochemical properties
-
Krummel, B. and Chamberlin, M.J. (1992a) Structural analysis of ternary complexes of Escherichia coli RNA polymerase. Individual complexes halted along different transcription units have distinct and unexpected biochemical properties. J. Mol. Biol., 225, 221-237.
-
(1992)
J. Mol. Biol.
, vol.225
, pp. 221-237
-
-
Krummel, B.1
Chamberlin, M.J.2
-
19
-
-
0026766857
-
Structural analysis of ternary complexes of Escherichia coli RNA polymerase. Deoxyribonuclease I footprinting of defined complexes
-
Krummel, B. and Chamberlin, M.J. (1992b) Structural analysis of ternary complexes of Escherichia coli RNA polymerase. Deoxyribonuclease I footprinting of defined complexes. J. Mol. Biol., 225, 239-250.
-
(1992)
J. Mol. Biol.
, vol.225
, pp. 239-250
-
-
Krummel, B.1
Chamberlin, M.J.2
-
20
-
-
0028879334
-
Purification of φ29 DNA polymerase
-
Lázaro, J.M., Blanco, L. and Salas, M. (1995) Purification of φ29 DNA polymerase. Methods Enzymol., 262, 42-49.
-
(1995)
Methods Enzymol.
, vol.262
, pp. 42-49
-
-
Lázaro, J.M.1
Blanco, L.2
Salas, M.3
-
21
-
-
0023645129
-
Isolation and properties of transcribing ternary complexes of Escherichia coli RNA polymerase positioned at a single template base
-
Levin, J.R., Krummel, B. and Chamberlin, M.J. (1987) Isolation and properties of transcribing ternary complexes of Escherichia coli RNA polymerase positioned at a single template base. J. Mol. Biol., 196, 85-100.
-
(1987)
J. Mol. Biol.
, vol.196
, pp. 85-100
-
-
Levin, J.R.1
Krummel, B.2
Chamberlin, M.J.3
-
22
-
-
0028908039
-
Head-on collision between a DNA replication apparatus and RNA polymerase transcription complex
-
Liu, B. and Alberts, B.M. (1995) Head-on collision between a DNA replication apparatus and RNA polymerase transcription complex. Science, 267, 1131-1137.
-
(1995)
Science
, vol.267
, pp. 1131-1137
-
-
Liu, B.1
Alberts, B.M.2
-
23
-
-
0027443441
-
The DNA replication fork can pass RNA polymerase without displacing the nascent transcript
-
Liu, B., Wong, M.L., Tinker, R.L., Geiduschek, E.P. and Alberts, B.M. (1993) The DNA replication fork can pass RNA polymerase without displacing the nascent transcript. Nature, 366, 33-39.
-
(1993)
Nature
, vol.366
, pp. 33-39
-
-
Liu, B.1
Wong, M.L.2
Tinker, R.L.3
Geiduschek, E.P.4
Alberts, B.M.5
-
24
-
-
0027944255
-
A transcribing RNA polymerase molecule survives DNA replication without aborting its growing RNA chain
-
Liu, B., Wong, M.L. and Alberts, B.M. (1994) A transcribing RNA polymerase molecule survives DNA replication without aborting its growing RNA chain. Proc. Natl Acad. Sci. USA, 91, 10660-10664.
-
(1994)
Proc. Natl Acad. Sci. USA
, vol.91
, pp. 10660-10664
-
-
Liu, B.1
Wong, M.L.2
Alberts, B.M.3
-
25
-
-
0040528887
-
Protein-primed DNA replication: A transition between two modes of priming by a unique DNA polymerase
-
Méndez, J., Blanco, L. and Salas, M. (1997) Protein-primed DNA replication: a transition between two modes of priming by a unique DNA polymerase. EMBO J., 16, 2519-2527.
-
(1997)
EMBO J.
, vol.16
, pp. 2519-2527
-
-
Méndez, J.1
Blanco, L.2
Salas, M.3
-
26
-
-
0028909363
-
Transcription regulation in bacteriophage φ29: Expression of the viral promoters throughout the infection cycle
-
Monsalve, M., Mencía, M., Rojo, F. and Salas M. (1995) Transcription regulation in bacteriophage φ29: expression of the viral promoters throughout the infection cycle. Virology, 207, 23-31.
-
(1995)
Virology
, vol.207
, pp. 23-31
-
-
Monsalve, M.1
Mencía, M.2
Rojo, F.3
Salas, M.4
-
27
-
-
0031905347
-
DNA polymerase template switching at specific sites on the φ29 genome causes the in vivo accumulation of subgenomic φ29 DNA molecules
-
Murthy, V., Meijer, W.J.J., Blanco, L. and Salas, M. (1998) DNA polymerase template switching at specific sites on the φ29 genome causes the in vivo accumulation of subgenomic φ29 DNA molecules. Mol. Microbiol., 29, 787-798.
-
(1998)
Mol. Microbiol.
, vol.29
, pp. 787-798
-
-
Murthy, V.1
Meijer, W.J.J.2
Blanco, L.3
Salas, M.4
-
28
-
-
0029818631
-
Transcription processivity: Protein-DNA interactions holding together the elongation complex
-
Nudler, E., Avetissova, E., Markovtsov, V. and Goldfarb, A. (1996) Transcription processivity: protein-DNA interactions holding together the elongation complex. Science, 273, 211-217.
-
(1996)
Science
, vol.273
, pp. 211-217
-
-
Nudler, E.1
Avetissova, E.2
Markovtsov, V.3
Goldfarb, A.4
-
29
-
-
0343276268
-
Initiation of phage φ29 DNA replication in vitro: Formation of a covalent complex between the terminal protein, p3 and 5′-dAMP
-
Peñalva, M.A. and Salas, M. (1982) Initiation of phage φ29 DNA replication in vitro: formation of a covalent complex between the terminal protein, p3 and 5′-dAMP. Proc. Natl Acad. Sci. USA, 79, 5522-5526.
-
(1982)
Proc. Natl Acad. Sci. USA
, vol.79
, pp. 5522-5526
-
-
Peñalva, M.A.1
Salas, M.2
-
30
-
-
0021840415
-
R promoter interaction. Assignment of the kinetic steps corresponding to protein conformational change and DNA opening
-
R promoter interaction. Assignment of the kinetic steps corresponding to protein conformational change and DNA opening. J. Mol. Biol., 184, 441-453.
-
(1985)
J. Mol. Biol.
, vol.184
, pp. 441-453
-
-
Roe, J.-H.1
Burgess, R.R.2
Record, M.T.3
-
31
-
-
0019776204
-
Rifampicin inhibition of RNA synthesis by destabilisation of DNA-RNA polymerase-oligonucleotide complexes
-
Schutz, W. and Zillig, W. (1981) Rifampicin inhibition of RNA synthesis by destabilisation of DNA-RNA polymerase-oligonucleotide complexes. Nucleic Acids Res., 9, 6889-6906.
-
(1981)
Nucleic Acids Res.
, vol.9
, pp. 6889-6906
-
-
Schutz, W.1
Zillig, W.2
-
32
-
-
0018781773
-
RNA polymerase binding sites and transcription of the DNA of Bacillus subtilis phage φ29
-
Sogo, J.M., Inciarte, M.R., Corral, J., Viñuela, E. and Salas, M. (1979) RNA polymerase binding sites and transcription of the DNA of Bacillus subtilis phage φ29. J. Mol. Biol., 127, 411-436.
-
(1979)
J. Mol. Biol.
, vol.127
, pp. 411-436
-
-
Sogo, J.M.1
Inciarte, M.R.2
Corral, J.3
Viñuela, E.4
Salas, M.5
-
33
-
-
0023102647
-
A stressed intermediate in the formation of stably initiated RNA chains at the Escherichia coli lacUV5 promoter
-
Straney, D.C. and Crothers, D.M. (1987) A stressed intermediate in the formation of stably initiated RNA chains at the Escherichia coli lacUV5 promoter. J. Mol. Biol., 193, 267-278.
-
(1987)
J. Mol. Biol.
, vol.193
, pp. 267-278
-
-
Straney, D.C.1
Crothers, D.M.2
-
34
-
-
0028874391
-
CGG repeats associated with DNA instability and chromosome fragility from structures that block DNA synthesis in vitro
-
Usdin, K. and Woodford, K.J. (1995) CGG repeats associated with DNA instability and chromosome fragility from structures that block DNA synthesis in vitro. Nucleic Acids Res., 23, 4202-4209.
-
(1995)
Nucleic Acids Res.
, vol.23
, pp. 4202-4209
-
-
Usdin, K.1
Woodford, K.J.2
-
35
-
-
0029029468
-
Discontinuous movements of DNA and RNA in RNA polymerase accompany formation of a paused transcription complex
-
Wang, D., Meier, T.I., Chan, C.L., Feng, G., Lee, D.N. and Landick, R. (1995) Discontinuous movements of DNA and RNA in RNA polymerase accompany formation of a paused transcription complex. Cell, 81, 341-350.
-
(1995)
Cell
, vol.81
, pp. 341-350
-
-
Wang, D.1
Meier, T.I.2
Chan, C.L.3
Feng, G.4
Lee, D.N.5
Landick, R.6
-
36
-
-
0024407956
-
Effects of internal deletions on the priming activity of the phage φ29 terminal protein
-
Zaballos, A., Lázaro, J.M., Méndez, E., Mellado, R.P. and Salas, M. (1989) Effects of internal deletions on the priming activity of the phage φ29 terminal protein. Gene, 83, 187-195.
-
(1989)
Gene
, vol.83
, pp. 187-195
-
-
Zaballos, A.1
Lázaro, J.M.2
Méndez, E.3
Mellado, R.P.4
Salas, M.5
-
37
-
-
0025310941
-
Orientation of genes in the Bacillus subtilis chromosome
-
Zeigler, D.R. and Dean, D.H. (1990) Orientation of genes in the Bacillus subtilis chromosome. Genetics, 125, 703-708.
-
(1990)
Genetics
, vol.125
, pp. 703-708
-
-
Zeigler, D.R.1
Dean, D.H.2
|