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Volumn 11, Issue 1, 2010, Pages

Systematic identification and evolutionary features of rhesus monkey small nucleolar RNAs

Author keywords

[No Author keywords available]

Indexed keywords

SMALL NUCLEAR RNA; SMALL NUCLEOLAR RNA;

EID: 76149143603     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-11-61     Document Type: Article
Times cited : (18)

References (65)
  • 3
    • 21044431735 scopus 로고    scopus 로고
    • Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution
    • 10.1126/science.1108625, 15790807
    • Cheng J, Kapranov P, Drenkow J, Dike S, Brubaker S, Patel S, Long J, Stern D, Tammana H, Helt G, et al. Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution. Science 2005, 308(5725):1149-1154. 10.1126/science.1108625, 15790807.
    • (2005) Science , vol.308 , Issue.5725 , pp. 1149-1154
    • Cheng, J.1    Kapranov, P.2    Drenkow, J.3    Dike, S.4    Brubaker, S.5    Patel, S.6    Long, J.7    Stern, D.8    Tammana, H.9    Helt, G.10
  • 4
    • 12344291073 scopus 로고    scopus 로고
    • Dark matter in the genome: evidence of widespread transcription detected by microarray tiling experiments
    • 10.1016/j.tig.2004.12.009, 15661355
    • Johnson JM, Edwards S, Shoemaker D, Schadt EE. Dark matter in the genome: evidence of widespread transcription detected by microarray tiling experiments. Trends Genet 2005, 21(2):93-102. 10.1016/j.tig.2004.12.009, 15661355.
    • (2005) Trends Genet , vol.21 , Issue.2 , pp. 93-102
    • Johnson, J.M.1    Edwards, S.2    Shoemaker, D.3    Schadt, E.E.4
  • 5
    • 17644382616 scopus 로고    scopus 로고
    • Waste not, want not--transcript excess in multicellular eukaryotes
    • 10.1016/j.tig.2005.02.014, 15851065
    • Brosius J. Waste not, want not--transcript excess in multicellular eukaryotes. Trends Genet 2005, 21(5):287-288. 10.1016/j.tig.2005.02.014, 15851065.
    • (2005) Trends Genet , vol.21 , Issue.5 , pp. 287-288
    • Brosius, J.1
  • 9
    • 33846074755 scopus 로고    scopus 로고
    • RNAdb 2.0--an expanded database of mammalian non-coding RNAs
    • 1751534, 17145715, 10.1093/nar/gkl926, Database
    • Pang KC, Stephen S, Dinger ME, Engstrom PG, Lenhard B, Mattick JS. RNAdb 2.0--an expanded database of mammalian non-coding RNAs. Nucleic Acids Res 2007, (35 Database):D178-182. 1751534, 17145715, 10.1093/nar/gkl926.
    • (2007) Nucleic Acids Res , Issue.35
    • Pang, K.C.1    Stephen, S.2    Dinger, M.E.3    Engstrom, P.G.4    Lenhard, B.5    Mattick, J.S.6
  • 10
    • 33845436047 scopus 로고    scopus 로고
    • Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans
    • 10.1016/j.cell.2006.10.040, 17174894
    • Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP. Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans. Cell 2006, 127(6):1193-1207. 10.1016/j.cell.2006.10.040, 17174894.
    • (2006) Cell , vol.127 , Issue.6 , pp. 1193-1207
    • Ruby, J.G.1    Jan, C.2    Player, C.3    Axtell, M.J.4    Lee, W.5    Nusbaum, C.6    Ge, H.7    Bartel, D.P.8
  • 11
    • 33745336617 scopus 로고    scopus 로고
    • A germline-specific class of small RNAs binds mammalian Piwi proteins
    • Girard A, Sachidanandam R, Hannon GJ, Carmell MA. A germline-specific class of small RNAs binds mammalian Piwi proteins. Nature 2006, 442(7099):199-202.
    • (2006) Nature , vol.442 , Issue.7099 , pp. 199-202
    • Girard, A.1    Sachidanandam, R.2    Hannon, G.J.3    Carmell, M.A.4
  • 13
    • 0035355205 scopus 로고    scopus 로고
    • RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse
    • 125495, 11387227, 10.1093/emboj/20.11.2943
    • Huttenhofer A, Kiefmann M, Meier-Ewert S, O'Brien J, Lehrach H, Bachellerie JP, Brosius J. RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. EMBO J 2001, 20(11):2943-2953. 125495, 11387227, 10.1093/emboj/20.11.2943.
    • (2001) EMBO J , vol.20 , Issue.11 , pp. 2943-2953
    • Huttenhofer, A.1    Kiefmann, M.2    Meier-Ewert, S.3    O'Brien, J.4    Lehrach, H.5    Bachellerie, J.P.6    Brosius, J.7
  • 14
    • 0038688072 scopus 로고    scopus 로고
    • Identification of putative noncoding RNAs among the RIKEN mouse full-length cDNA collection
    • 403720, 12819127, 10.1101/gr.1011603, B
    • Numata K, Kanai A, Saito R, Kondo S, Adachi J, Wilming LG, Hume DA, Hayashizaki Y, Tomita M. Identification of putative noncoding RNAs among the RIKEN mouse full-length cDNA collection. Genome Res 2003, 13(6B):1301-1306. 403720, 12819127, 10.1101/gr.1011603.
    • (2003) Genome Res , vol.13 , Issue.6 , pp. 1301-1306
    • Numata, K.1    Kanai, A.2    Saito, R.3    Kondo, S.4    Adachi, J.5    Wilming, L.G.6    Hume, D.A.7    Hayashizaki, Y.8    Tomita, M.9
  • 15
    • 38649114329 scopus 로고    scopus 로고
    • Specific expression of long noncoding RNAs in the mouse brain
    • 2206602, 18184812, 10.1073/pnas.0706729105
    • Mercer TR, Dinger ME, Sunkin SM, Mehler MF, Mattick JS. Specific expression of long noncoding RNAs in the mouse brain. Proc Natl Acad Sci USA 2008, 105(2):716-721. 2206602, 18184812, 10.1073/pnas.0706729105.
    • (2008) Proc Natl Acad Sci USA , vol.105 , Issue.2 , pp. 716-721
    • Mercer, T.R.1    Dinger, M.E.2    Sunkin, S.M.3    Mehler, M.F.4    Mattick, J.S.5
  • 16
    • 30044434769 scopus 로고    scopus 로고
    • Experimental validation of the regulated expression of large numbers of non-coding RNAs from the mouse genome
    • 1356124, 16344565, 10.1101/gr.4200206
    • Ravasi T, Suzuki H, Pang KC, Katayama S, Furuno M, Okunishi R, Fukuda S, Ru K, Frith MC, Gongora MM, et al. Experimental validation of the regulated expression of large numbers of non-coding RNAs from the mouse genome. Genome Res 2006, 16(1):11-19. 1356124, 16344565, 10.1101/gr.4200206.
    • (2006) Genome Res , vol.16 , Issue.1 , pp. 11-19
    • Ravasi, T.1    Suzuki, H.2    Pang, K.C.3    Katayama, S.4    Furuno, M.5    Okunishi, R.6    Fukuda, S.7    Ru, K.8    Frith, M.C.9    Gongora, M.M.10
  • 17
    • 60349120914 scopus 로고    scopus 로고
    • Long non-coding RNAs: insights into functions
    • 10.1038/nrg2521, 19188922
    • Mercer TR, Dinger ME, Mattick JS. Long non-coding RNAs: insights into functions. Nat Rev Genet 2009, 10(3):155-159. 10.1038/nrg2521, 19188922.
    • (2009) Nat Rev Genet , vol.10 , Issue.3 , pp. 155-159
    • Mercer, T.R.1    Dinger, M.E.2    Mattick, J.S.3
  • 18
    • 67649671961 scopus 로고    scopus 로고
    • Long noncoding RNAs: functional surprises from the RNA world
    • 10.1101/gad.1800909, 19571179
    • Wilusz JE, Sunwoo H, Spector DL. Long noncoding RNAs: functional surprises from the RNA world. Genes Dev 2009, 23(13):1494-1504. 10.1101/gad.1800909, 19571179.
    • (2009) Genes Dev , vol.23 , Issue.13 , pp. 1494-1504
    • Wilusz, J.E.1    Sunwoo, H.2    Spector, D.L.3
  • 19
    • 0029026640 scopus 로고
    • The small nucleolar RNAs
    • 10.1146/annurev.bi.64.070195.004341, 7574504
    • Maxwell ES, Fournier MJ. The small nucleolar RNAs. Annu Rev Biochem 1995, 64:897-934. 10.1146/annurev.bi.64.070195.004341, 7574504.
    • (1995) Annu Rev Biochem , vol.64 , pp. 897-934
    • Maxwell, E.S.1    Fournier, M.J.2
  • 20
    • 0030572699 scopus 로고    scopus 로고
    • The RNA world of the nucleolus: two major families of small RNAs defined by different box elements with related functions
    • 10.1016/S0092-8674(00)80156-7, 8797828
    • Balakin AG, Smith L, Fournier MJ. The RNA world of the nucleolus: two major families of small RNAs defined by different box elements with related functions. Cell 1996, 86(5):823-834. 10.1016/S0092-8674(00)80156-7, 8797828.
    • (1996) Cell , vol.86 , Issue.5 , pp. 823-834
    • Balakin, A.G.1    Smith, L.2    Fournier, M.J.3
  • 21
    • 0035898634 scopus 로고    scopus 로고
    • Small nucleolar RNA-guided post-transcriptional modification of cellular RNAs
    • 125535, 11447102, 10.1093/emboj/20.14.3617
    • Kiss T. Small nucleolar RNA-guided post-transcriptional modification of cellular RNAs. EMBO J 2001, 20(14):3617-3622. 125535, 11447102, 10.1093/emboj/20.14.3617.
    • (2001) EMBO J , vol.20 , Issue.14 , pp. 3617-3622
    • Kiss, T.1
  • 22
    • 0035890644 scopus 로고    scopus 로고
    • Box C/D RNA guides for the ribose methylation of archaeal tRNAs. The tRNATrp intron guides the formation of two ribose-methylated nucleosides in the mature tRNATrp
    • 92551, 11713301, 10.1093/nar/29.22.4518
    • Clouet d'Orval B, Bortolin ML, Gaspin C, Bachellerie JP. Box C/D RNA guides for the ribose methylation of archaeal tRNAs. The tRNATrp intron guides the formation of two ribose-methylated nucleosides in the mature tRNATrp. Nucleic Acids Res 2001, 29(22):4518-4529. 92551, 11713301, 10.1093/nar/29.22.4518.
    • (2001) Nucleic Acids Res , vol.29 , Issue.22 , pp. 4518-4529
    • Clouet d'Orval, B.1    Bortolin, M.L.2    Gaspin, C.3    Bachellerie, J.P.4
  • 23
    • 33646922629 scopus 로고    scopus 로고
    • Evolution of small nucleolar RNAs in nematodes
    • 1464110, 16714446, 10.1093/nar/gkl359
    • Zemann A, op de Bekke A, Kiefmann M, Brosius J, Schmitz J. Evolution of small nucleolar RNAs in nematodes. Nucleic Acids Res 2006, 34(9):2676-2685. 1464110, 16714446, 10.1093/nar/gkl359.
    • (2006) Nucleic Acids Res , vol.34 , Issue.9 , pp. 2676-2685
    • Zemann, A.1    op de Bekke, A.2    Kiefmann, M.3    Brosius, J.4    Schmitz, J.5
  • 24
    • 0037013831 scopus 로고    scopus 로고
    • Cajal body-specific small nuclear RNAs: a novel class of 2'-O-methylation and pseudouridylation guide RNAs
    • 126017, 12032087, 10.1093/emboj/21.11.2746
    • Darzacq X, Jady BE, Verheggen C, Kiss AM, Bertrand E, Kiss T. Cajal body-specific small nuclear RNAs: a novel class of 2'-O-methylation and pseudouridylation guide RNAs. EMBO J 2002, 21(11):2746-2756. 126017, 12032087, 10.1093/emboj/21.11.2746.
    • (2002) EMBO J , vol.21 , Issue.11 , pp. 2746-2756
    • Darzacq, X.1    Jady, B.E.2    Verheggen, C.3    Kiss, A.M.4    Bertrand, E.5    Kiss, T.6
  • 25
    • 30844442607 scopus 로고    scopus 로고
    • The snoRNA HBII-52 regulates alternative splicing of the serotonin receptor 2C
    • 10.1126/science.1118265, 16357227
    • Kishore S, Stamm S. The snoRNA HBII-52 regulates alternative splicing of the serotonin receptor 2C. Science 2006, 311(5758):230-232. 10.1126/science.1118265, 16357227.
    • (2006) Science , vol.311 , Issue.5758 , pp. 230-232
    • Kishore, S.1    Stamm, S.2
  • 27
    • 57149094023 scopus 로고    scopus 로고
    • SnoRNA, a novel precursor of microRNA in Giardia lamblia
    • 2583053, 19043559, 10.1371/journal.ppat.1000224
    • Saraiya AA, Wang CC. snoRNA, a novel precursor of microRNA in Giardia lamblia. PLoS Pathog 2008, 4(11):e1000224. 2583053, 19043559, 10.1371/journal.ppat.1000224.
    • (2008) PLoS Pathog , vol.4 , Issue.11
    • Saraiya, A.A.1    Wang, C.C.2
  • 28
    • 9244225692 scopus 로고    scopus 로고
    • Guide RNAs with 5' caps and novel box C/D snoRNA-like domains for modification of snRNAs in metazoa
    • 10.1016/j.cub.2004.11.003, 15556860
    • Tycowski KT, Aab A, Steitz JA. Guide RNAs with 5' caps and novel box C/D snoRNA-like domains for modification of snRNAs in metazoa. Curr Biol 2004, 14(22):1985-1995. 10.1016/j.cub.2004.11.003, 15556860.
    • (2004) Curr Biol , vol.14 , Issue.22 , pp. 1985-1995
    • Tycowski, K.T.1    Aab, A.2    Steitz, J.A.3
  • 29
    • 0027284266 scopus 로고
    • A small nucleolar RNA is processed from an intron of the human gene encoding ribosomal protein S3
    • 10.1101/gad.7.7a.1176, 8319909, B
    • Tycowski KT, Shu MD, Steitz JA. A small nucleolar RNA is processed from an intron of the human gene encoding ribosomal protein S3. Genes Dev 1993, 7(7A):1176-1190. 10.1101/gad.7.7a.1176, 8319909.
    • (1993) Genes Dev , vol.7 , Issue.7 , pp. 1176-1190
    • Tycowski, K.T.1    Shu, M.D.2    Steitz, J.A.3
  • 30
    • 0029068460 scopus 로고
    • Exonucleolytic processing of small nucleolar RNAs from pre-mRNA introns
    • 10.1101/gad.9.11.1411, 7797080
    • Kiss T, Filipowicz W. Exonucleolytic processing of small nucleolar RNAs from pre-mRNA introns. Genes Dev 1995, 9(11):1411-1424. 10.1101/gad.9.11.1411, 7797080.
    • (1995) Genes Dev , vol.9 , Issue.11 , pp. 1411-1424
    • Kiss, T.1    Filipowicz, W.2
  • 31
    • 30044435097 scopus 로고    scopus 로고
    • Organization of the Caenorhabditis elegans small non-coding transcriptome: genomic features, biogenesis, and expression
    • 1356125, 16344563, 10.1101/gr.4139206
    • Deng W, Zhu X, Skogerbo G, Zhao Y, Fu Z, Wang Y, He H, Cai L, Sun H, Liu C, et al. Organization of the Caenorhabditis elegans small non-coding transcriptome: genomic features, biogenesis, and expression. Genome Res 2006, 16(1):20-29. 1356125, 16344563, 10.1101/gr.4139206.
    • (2006) Genome Res , vol.16 , Issue.1 , pp. 20-29
    • Deng, W.1    Zhu, X.2    Skogerbo, G.3    Zhao, Y.4    Fu, Z.5    Wang, Y.6    He, H.7    Cai, L.8    Sun, H.9    Liu, C.10
  • 32
    • 2942718696 scopus 로고    scopus 로고
    • Human box H/ACA pseudouridylation guide RNA machinery
    • 480876, 15199136, 10.1128/MCB.24.13.5797-5807.2004
    • Kiss AM, Jady BE, Bertrand E, Kiss T. Human box H/ACA pseudouridylation guide RNA machinery. Mol Cell Biol 2004, 24(13):5797-5807. 480876, 15199136, 10.1128/MCB.24.13.5797-5807.2004.
    • (2004) Mol Cell Biol , vol.24 , Issue.13 , pp. 5797-5807
    • Kiss, A.M.1    Jady, B.E.2    Bertrand, E.3    Kiss, T.4
  • 33
    • 33846932045 scopus 로고    scopus 로고
    • Genome-wide analyses of retrogenes derived from the human box H/ACA snoRNAs
    • 1802619, 17175533
    • Luo Y, Li S. Genome-wide analyses of retrogenes derived from the human box H/ACA snoRNAs. Nucleic Acids Res 2007, 35(2):559-571. 1802619, 17175533.
    • (2007) Nucleic Acids Res , vol.35 , Issue.2 , pp. 559-571
    • Luo, Y.1    Li, S.2
  • 34
    • 33846012547 scopus 로고    scopus 로고
    • Mammalian small nucleolar RNAs are mobile genetic elements
    • 1687206, 17154719, 10.1371/journal.pgen.0020205
    • Weber MJ. Mammalian small nucleolar RNAs are mobile genetic elements. PLoS Genet 2006, 2(12):e205. 1687206, 17154719, 10.1371/journal.pgen.0020205.
    • (2006) PLoS Genet , vol.2 , Issue.12
    • Weber, M.J.1
  • 35
    • 43749105204 scopus 로고    scopus 로고
    • Retroposed SNOfall--a mammalian-wide comparison of platypus snoRNAs
    • 2413151, 18463303, 10.1101/gr.7177908
    • Schmitz J, Zemann A, Churakov G, Kuhl H, Grutzner F, Reinhardt R, Brosius J. Retroposed SNOfall--a mammalian-wide comparison of platypus snoRNAs. Genome Res 2008, 18(6):1005-1010. 2413151, 18463303, 10.1101/gr.7177908.
    • (2008) Genome Res , vol.18 , Issue.6 , pp. 1005-1010
    • Schmitz, J.1    Zemann, A.2    Churakov, G.3    Kuhl, H.4    Grutzner, F.5    Reinhardt, R.6    Brosius, J.7
  • 36
    • 0032580152 scopus 로고    scopus 로고
    • A molecular timescale for vertebrate evolution
    • 10.1038/31927, 9582070
    • Kumar S, Hedges SB. A molecular timescale for vertebrate evolution. Nature 1998, 392(6679):917-920. 10.1038/31927, 9582070.
    • (1998) Nature , vol.392 , Issue.6679 , pp. 917-920
    • Kumar, S.1    Hedges, S.B.2
  • 40
    • 77950298955 scopus 로고    scopus 로고
    • Using RepeatMasker to identify repetitive elements in genomic sequences
    • Chapter 4, Unit 4
    • Chen N. Using RepeatMasker to identify repetitive elements in genomic sequences. Curr Protoc Bioinformatics 2004, Chapter 4(Unit 4):10.
    • (2004) Curr Protoc Bioinformatics , pp. 10
    • Chen, N.1
  • 42
    • 20644449571 scopus 로고    scopus 로고
    • An abundance of RNA regulators
    • 10.1146/annurev.biochem.74.082803.133136, 15952886
    • Storz G, Altuvia S, Wassarman KM. An abundance of RNA regulators. Annu Rev Biochem 2005, 74:199-217. 10.1146/annurev.biochem.74.082803.133136, 15952886.
    • (2005) Annu Rev Biochem , vol.74 , pp. 199-217
    • Storz, G.1    Altuvia, S.2    Wassarman, K.M.3
  • 43
    • 33644756685 scopus 로고    scopus 로고
    • Micro RNAs in animal development
    • 10.1016/j.cell.2006.02.030, 16530032
    • Plasterk RH. Micro RNAs in animal development. Cell 2006, 124(5):877-881. 10.1016/j.cell.2006.02.030, 16530032.
    • (2006) Cell , vol.124 , Issue.5 , pp. 877-881
    • Plasterk, R.H.1
  • 44
    • 33846169089 scopus 로고    scopus 로고
    • Eukaryotic regulatory RNAs: an answer to the 'genome complexity' conundrum
    • 10.1101/gad.1484207, 17210785
    • Prasanth KV, Spector DL. Eukaryotic regulatory RNAs: an answer to the 'genome complexity' conundrum. Genes Dev 2007, 21(1):11-42. 10.1101/gad.1484207, 17210785.
    • (2007) Genes Dev , vol.21 , Issue.1 , pp. 11-42
    • Prasanth, K.V.1    Spector, D.L.2
  • 45
    • 41349098339 scopus 로고    scopus 로고
    • MicroRNAs make big impression in disease after disease
    • 10.1126/science.319.5871.1782, 18369134
    • Couzin J. MicroRNAs make big impression in disease after disease. Science 2008, 319(5871):1782-1784. 10.1126/science.319.5871.1782, 18369134.
    • (2008) Science , vol.319 , Issue.5871 , pp. 1782-1784
    • Couzin, J.1
  • 46
    • 71049154451 scopus 로고    scopus 로고
    • Systematic identification and characterization of chicken (Gallus gallus) ncRNAs
    • 2770669, 19720738, 10.1093/nar/gkp704
    • Zhang Y, Wang J, Huang S, Zhu X, Liu J, Yang N, Song D, Wu R, Deng W, Skogerbo G, et al. Systematic identification and characterization of chicken (Gallus gallus) ncRNAs. Nucleic Acids Res 2009, 37(19):6562-6574. 2770669, 19720738, 10.1093/nar/gkp704.
    • (2009) Nucleic Acids Res , vol.37 , Issue.19 , pp. 6562-6574
    • Zhang, Y.1    Wang, J.2    Huang, S.3    Zhu, X.4    Liu, J.5    Yang, N.6    Song, D.7    Wu, R.8    Deng, W.9    Skogerbo, G.10
  • 47
    • 0344668837 scopus 로고    scopus 로고
    • Identification of 13 novel human modification guide RNAs
    • 275545, 14602913, 10.1093/nar/gkg849
    • Vitali P, Royo H, Seitz H, Bachellerie JP, Huttenhofer A, Cavaille J. Identification of 13 novel human modification guide RNAs. Nucleic Acids Res 2003, 31(22):6543-6551. 275545, 14602913, 10.1093/nar/gkg849.
    • (2003) Nucleic Acids Res , vol.31 , Issue.22 , pp. 6543-6551
    • Vitali, P.1    Royo, H.2    Seitz, H.3    Bachellerie, J.P.4    Huttenhofer, A.5    Cavaille, J.6
  • 48
    • 0038719826 scopus 로고    scopus 로고
    • RNomics in Drosophila melanogaster: identification of 66 candidates for novel non-messenger RNAs
    • 156043, 12736298, 10.1093/nar/gkg361
    • Yuan G, Klambt C, Bachellerie JP, Brosius J, Huttenhofer A. RNomics in Drosophila melanogaster: identification of 66 candidates for novel non-messenger RNAs. Nucleic Acids Res 2003, 31(10):2495-2507. 156043, 12736298, 10.1093/nar/gkg361.
    • (2003) Nucleic Acids Res , vol.31 , Issue.10 , pp. 2495-2507
    • Yuan, G.1    Klambt, C.2    Bachellerie, J.P.3    Brosius, J.4    Huttenhofer, A.5
  • 49
    • 29444457713 scopus 로고    scopus 로고
    • Rapid evolution of noncoding RNAs: lack of conservation does not mean lack of function
    • 10.1016/j.tig.2005.10.003, 16290135
    • Pang KC, Frith MC, Mattick JS. Rapid evolution of noncoding RNAs: lack of conservation does not mean lack of function. Trends Genet 2006, 22(1):1-5. 10.1016/j.tig.2005.10.003, 16290135.
    • (2006) Trends Genet , vol.22 , Issue.1 , pp. 1-5
    • Pang, K.C.1    Frith, M.C.2    Mattick, J.S.3
  • 50
    • 34248212337 scopus 로고    scopus 로고
    • Comparative analysis of genome tiling array data reveals many novel primate-specific functional RNAs in human
    • 1796608, 17288572, 10.1186/1471-2148-7-S1-S14
    • Zhang Z, Pang AW, Gerstein M. Comparative analysis of genome tiling array data reveals many novel primate-specific functional RNAs in human. BMC Evol Biol 2007, 7(Suppl 1):S14. 1796608, 17288572, 10.1186/1471-2148-7-S1-S14.
    • (2007) BMC Evol Biol , vol.7 , Issue.SUPPL. 1
    • Zhang, Z.1    Pang, A.W.2    Gerstein, M.3
  • 53
    • 31744432337 scopus 로고    scopus 로고
    • The role of microRNA-1 and microRNA-133 in skeletal muscle proliferation and differentiation
    • 2538576, 16380711, 10.1038/ng1725
    • Chen JF, Mandel EM, Thomson JM, Wu Q, Callis TE, Hammond SM, Conlon FL, Wang DZ. The role of microRNA-1 and microRNA-133 in skeletal muscle proliferation and differentiation. Nat Genet 2006, 38(2):228-233. 2538576, 16380711, 10.1038/ng1725.
    • (2006) Nat Genet , vol.38 , Issue.2 , pp. 228-233
    • Chen, J.F.1    Mandel, E.M.2    Thomson, J.M.3    Wu, Q.4    Callis, T.E.5    Hammond, S.M.6    Conlon, F.L.7    Wang, D.Z.8
  • 54
    • 34249090725 scopus 로고    scopus 로고
    • Human and mouse protein-noncoding snoRNA host genes with dissimilar nucleotide sequences show chromosomal synteny
    • 1869039, 17468437, 10.1261/rna.209707
    • Tanaka-Fujita R, Soeno Y, Satoh H, Nakamura Y, Mori S. Human and mouse protein-noncoding snoRNA host genes with dissimilar nucleotide sequences show chromosomal synteny. RNA 2007, 13(6):811-816. 1869039, 17468437, 10.1261/rna.209707.
    • (2007) RNA , vol.13 , Issue.6 , pp. 811-816
    • Tanaka-Fujita, R.1    Soeno, Y.2    Satoh, H.3    Nakamura, Y.4    Mori, S.5
  • 55
    • 0031878107 scopus 로고    scopus 로고
    • The host gene for intronic U17 small nucleolar RNAs in mammals has no protein-coding potential and is a member of the 5'-terminal oligopyrimidine gene family
    • 109036, 9671460
    • Pelczar P, Filipowicz W. The host gene for intronic U17 small nucleolar RNAs in mammals has no protein-coding potential and is a member of the 5'-terminal oligopyrimidine gene family. Mol Cell Biol 1998, 18(8):4509-4518. 109036, 9671460.
    • (1998) Mol Cell Biol , vol.18 , Issue.8 , pp. 4509-4518
    • Pelczar, P.1    Filipowicz, W.2
  • 56
    • 0242354129 scopus 로고    scopus 로고
    • The origin of new genes: glimpses from the young and old
    • 10.1038/nrg1204, 14634634
    • Long M, Betran E, Thornton K, Wang W. The origin of new genes: glimpses from the young and old. Nat Rev Genet 2003, 4(11):865-875. 10.1038/nrg1204, 14634634.
    • (2003) Nat Rev Genet , vol.4 , Issue.11 , pp. 865-875
    • Long, M.1    Betran, E.2    Thornton, K.3    Wang, W.4
  • 57
    • 0028272315 scopus 로고
    • RNA sequence analysis using covariance models
    • 308124, 8029015, 10.1093/nar/22.11.2079
    • Eddy SR, Durbin R. RNA sequence analysis using covariance models. Nucleic acids research 1994, 22(11):2079-2088. 308124, 8029015, 10.1093/nar/22.11.2079.
    • (1994) Nucleic acids research , vol.22 , Issue.11 , pp. 2079-2088
    • Eddy, S.R.1    Durbin, R.2
  • 58
    • 38449092636 scopus 로고    scopus 로고
    • SnoReport: computational identification of snoRNAs with unknown targets
    • 10.1093/bioinformatics/btm464, 17895272
    • Hertel J, Hofacker IL, Stadler PF. SnoReport: computational identification of snoRNAs with unknown targets. Bioinformatics 2008, 24(2):158-164. 10.1093/bioinformatics/btm464, 17895272.
    • (2008) Bioinformatics , vol.24 , Issue.2 , pp. 158-164
    • Hertel, J.1    Hofacker, I.L.2    Stadler, P.F.3
  • 59
    • 58149189877 scopus 로고    scopus 로고
    • GtRNAdb: a database of transfer RNA genes detected in genomic sequence
    • Database, 2686519, 18984615, 10.1093/nar/gkn787
    • Chan PP, Lowe TM. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. Nucleic Acids Res 2009, (37 Database):D93-97. 2686519, 18984615, 10.1093/nar/gkn787.
    • (2009) Nucleic Acids Res , Issue.37
    • Chan, P.P.1    Lowe, T.M.2
  • 60
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • 169194, 12824337, 10.1093/nar/gkg595
    • Zuker M. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res 2003, 31(13):3406-3415. 169194, 12824337, 10.1093/nar/gkg595.
    • (2003) Nucleic Acids Res , vol.31 , Issue.13 , pp. 3406-3415
    • Zuker, M.1
  • 63
    • 33750831582 scopus 로고    scopus 로고
    • Annotation, submission and screening of repetitive elements in Repbase: RepbaseSubmitter and Censor
    • 1634758, 17064419, 10.1186/1471-2105-7-474
    • Kohany O, Gentles AJ, Hankus L, Jurka J. Annotation, submission and screening of repetitive elements in Repbase: RepbaseSubmitter and Censor. BMC Bioinformatics 2006, 7:474. 1634758, 17064419, 10.1186/1471-2105-7-474.
    • (2006) BMC Bioinformatics , vol.7 , pp. 474
    • Kohany, O.1    Gentles, A.J.2    Hankus, L.3    Jurka, J.4
  • 64
    • 0027968068 scopus 로고
    • CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • 308517, 7984417, 10.1093/nar/22.22.4673
    • Thompson JD, Higgins DG, Gibson TJ. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 1994, 22(22):4673-4680. 308517, 7984417, 10.1093/nar/22.22.4673.
    • (1994) Nucleic Acids Res , vol.22 , Issue.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 65
    • 45949109669 scopus 로고    scopus 로고
    • MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences
    • 2562624, 18417537, 10.1093/bib/bbn017
    • Kumar S, Nei M, Dudley J, Tamura K. MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences. Brief Bioinform 2008, 9(4):299-306. 2562624, 18417537, 10.1093/bib/bbn017.
    • (2008) Brief Bioinform , vol.9 , Issue.4 , pp. 299-306
    • Kumar, S.1    Nei, M.2    Dudley, J.3    Tamura, K.4


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