-
1
-
-
33847076849
-
Chromatin modifications and their function.
-
10.1016/j.cell.2007.02.005, 17320507
-
Kouzarides T. Chromatin modifications and their function. Cell 2007, 128:693-705. 10.1016/j.cell.2007.02.005, 17320507.
-
(2007)
Cell
, vol.128
, pp. 693-705
-
-
Kouzarides, T.1
-
2
-
-
33847070442
-
The role of chromatin during transcription.
-
10.1016/j.cell.2007.01.015, 17320508
-
Li B, Carey M, Workman JL. The role of chromatin during transcription. Cell 2007, 128:707-719. 10.1016/j.cell.2007.01.015, 17320508.
-
(2007)
Cell
, vol.128
, pp. 707-719
-
-
Li, B.1
Carey, M.2
Workman, J.L.3
-
3
-
-
33847106524
-
Higher-order structures of chromatin: the elusive 30 nm fiber.
-
10.1016/j.cell.2007.02.008, 17320503
-
Tremethick DJ. Higher-order structures of chromatin: the elusive 30 nm fiber. Cell 2007, 128:651-654. 10.1016/j.cell.2007.02.008, 17320503.
-
(2007)
Cell
, vol.128
, pp. 651-654
-
-
Tremethick, D.J.1
-
4
-
-
33646872978
-
Chromatin signatures of pluripotent cell lines.
-
10.1038/ncb1403, 16570078
-
Azuara V, Perry P, Sauer S, Spivakov M, Jorgensen HF, John RM, Gouti M, Casanova M, Warnes G, Merkenschlager M, Fisher AG. Chromatin signatures of pluripotent cell lines. Nat Cell Biol 2006, 8:532-538. 10.1038/ncb1403, 16570078.
-
(2006)
Nat Cell Biol
, vol.8
, pp. 532-538
-
-
Azuara, V.1
Perry, P.2
Sauer, S.3
Spivakov, M.4
Jorgensen, H.F.5
John, R.M.6
Gouti, M.7
Casanova, M.8
Warnes, G.9
Merkenschlager, M.10
Fisher, A.G.11
-
5
-
-
33646070846
-
A bivalent chromatin structure marks key developmental genes in embryonic stem cells.
-
10.1016/j.cell.2006.02.041, 16630819
-
Bernstein BE, Mikkelsen TS, Xie X, Kamal M, Huebert DJ, Cuff J, Fry B, Meissner A, Wernig M, Plath K, Jaenisch R, Wagschal A, Feil R, Schreiber SL, Lander ES. A bivalent chromatin structure marks key developmental genes in embryonic stem cells. Cell 2006, 125:315-326. 10.1016/j.cell.2006.02.041, 16630819.
-
(2006)
Cell
, vol.125
, pp. 315-326
-
-
Bernstein, B.E.1
Mikkelsen, T.S.2
Xie, X.3
Kamal, M.4
Huebert, D.J.5
Cuff, J.6
Fry, B.7
Meissner, A.8
Wernig, M.9
Plath, K.10
Jaenisch, R.11
Wagschal, A.12
Feil, R.13
Schreiber, S.L.14
Lander, E.S.15
-
6
-
-
34547624303
-
Genome-wide maps of chromatin state in pluripotent and lineage-committed cells.
-
10.1038/nature06008, 17603471
-
Mikkelsen TS, Ku M, Jaffe DB, Issac B, Lieberman E, Giannoukos G, Alvarez P, Brockman W, Kim TK, Koche RP, Lee W, Mendenhall E, O'Donovan A, Presser A, Russ C, Xie X, Meissner A, Wernig M, Jaenisch R, Nusbaum C, Lander ES, Bernstein BE. Genome-wide maps of chromatin state in pluripotent and lineage-committed cells. Nature 2007, 448:553-560. 10.1038/nature06008, 17603471.
-
(2007)
Nature
, vol.448
, pp. 553-560
-
-
Mikkelsen, T.S.1
Ku, M.2
Jaffe, D.B.3
Issac, B.4
Lieberman, E.5
Giannoukos, G.6
Alvarez, P.7
Brockman, W.8
Kim, T.K.9
Koche, R.P.10
Lee, W.11
Mendenhall, E.12
O'Donovan, A.13
Presser, A.14
Russ, C.15
Xie, X.16
Meissner, A.17
Wernig, M.18
Jaenisch, R.19
Nusbaum, C.20
Lander, E.S.21
Bernstein, B.E.22
more..
-
7
-
-
36749089980
-
Ring1-mediated ubiquitination of H2A restrains poised RNA polymerase II at bivalent genes in mouse ES cells.
-
10.1038/ncb1663, 18037880
-
Stock JK, Giadrossi S, Casanova M, Brookes E, Vidal M, Koseki H, Brockdorff N, Fisher AG, Pombo A. Ring1-mediated ubiquitination of H2A restrains poised RNA polymerase II at bivalent genes in mouse ES cells. Nat Cell Biol 2007, 9:1428-1435. 10.1038/ncb1663, 18037880.
-
(2007)
Nat Cell Biol
, vol.9
, pp. 1428-1435
-
-
Stock, J.K.1
Giadrossi, S.2
Casanova, M.3
Brookes, E.4
Vidal, M.5
Koseki, H.6
Brockdorff, N.7
Fisher, A.G.8
Pombo, A.9
-
8
-
-
66249132333
-
Histone H3 modifications associated with differentiation and long-term culture of mesenchymal adipose stem cells.
-
10.1089/scd.2008.0189, 18771397
-
Noer A, Lindeman LC, Collas P. Histone H3 modifications associated with differentiation and long-term culture of mesenchymal adipose stem cells. Stem Cells Dev 2009, 18:725-736. 10.1089/scd.2008.0189, 18771397.
-
(2009)
Stem Cells Dev
, vol.18
, pp. 725-736
-
-
Noer, A.1
Lindeman, L.C.2
Collas, P.3
-
9
-
-
67349169780
-
Genome-wide analysis of histone methylation reveals chromatin state-based regulation of gene transcription and function of memory CD8+ T cells.
-
10.1016/j.immuni.2009.05.006, 19523850
-
Araki Y, Wang Z, Zang C, Wood WH, Schones D, Cui K, Roh TY, Lhotsky B, Wersto RP, Peng W, Becker KG, Zhao K, Weng NP. Genome-wide analysis of histone methylation reveals chromatin state-based regulation of gene transcription and function of memory CD8+ T cells. Immunity 2009, 30:912-925. 10.1016/j.immuni.2009.05.006, 19523850.
-
(2009)
Immunity
, vol.30
, pp. 912-925
-
-
Araki, Y.1
Wang, Z.2
Zang, C.3
Wood, W.H.4
Schones, D.5
Cui, K.6
Roh, T.Y.7
Lhotsky, B.8
Wersto, R.P.9
Peng, W.10
Becker, K.G.11
Zhao, K.12
Weng, N.P.13
-
10
-
-
58049191558
-
Chromatin signatures in multipotent human hematopoietic stem cells indicate the fate of bivalent genes during differentiation.
-
10.1016/j.stem.2008.11.011, 19128795
-
Cui K, Zang C, Roh TY, Schones DE, Childs RW, Peng W, Zhao K. Chromatin signatures in multipotent human hematopoietic stem cells indicate the fate of bivalent genes during differentiation. Cell Stem Cell 2009, 4:80-93. 10.1016/j.stem.2008.11.011, 19128795.
-
(2009)
Cell Stem Cell
, vol.4
, pp. 80-93
-
-
Cui, K.1
Zang, C.2
Roh, T.Y.3
Schones, D.E.4
Childs, R.W.5
Peng, W.6
Zhao, K.7
-
11
-
-
58149395035
-
Bivalent domains enforce transcriptional memory of DNA methylated genes in cancer cells.
-
10.1073/pnas.0810133105, 2596747,2596747, 19060200
-
Rodriguez J, Munoz M, Vives L, Frangou CG, Groudine M, Peinado MA. Bivalent domains enforce transcriptional memory of DNA methylated genes in cancer cells. Proc Natl Acad Sci USA 2008, 105:19809-19814. 10.1073/pnas.0810133105, 2596747,2596747, 19060200.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 19809-19814
-
-
Rodriguez, J.1
Munoz, M.2
Vives, L.3
Frangou, C.G.4
Groudine, M.5
Peinado, M.A.6
-
12
-
-
0029163040
-
Short transcripts of the ternary complex provide insight into RNA polymerase II elongational pausing.
-
10.1006/jmbi.1995.0517, 7563071
-
Rasmussen EB, Lis JT. Short transcripts of the ternary complex provide insight into RNA polymerase II elongational pausing. J Mol Biol 1995, 252:522-535. 10.1006/jmbi.1995.0517, 7563071.
-
(1995)
J Mol Biol
, vol.252
, pp. 522-535
-
-
Rasmussen, E.B.1
Lis, J.T.2
-
13
-
-
0032519348
-
Direct cloning of DNA that interacts in vivo with a specific protein: application to RNA polymerase II and sites of pausing in Drosophila.
-
10.1093/nar/26.4.919, 147354, 9461448
-
Law A, Hirayoshi K, O'Brien T, Lis JT. Direct cloning of DNA that interacts in vivo with a specific protein: application to RNA polymerase II and sites of pausing in Drosophila. Nucleic Acids Res 1998, 26:919-924. 10.1093/nar/26.4.919, 147354, 9461448.
-
(1998)
Nucleic Acids Res
, vol.26
, pp. 919-924
-
-
Law, A.1
Hirayoshi, K.2
O'Brien, T.3
Lis, J.T.4
-
14
-
-
0032459466
-
Promoter-associated pausing in promoter architecture and postinitiation transcriptional regulation.
-
10.1101/sqb.1998.63.347, 10384299
-
Lis J. Promoter-associated pausing in promoter architecture and postinitiation transcriptional regulation. Cold Spring Harb Symp Quant Biol 1998, 63:347-356. 10.1101/sqb.1998.63.347, 10384299.
-
(1998)
Cold Spring Harb Symp Quant Biol
, vol.63
, pp. 347-356
-
-
Lis, J.1
-
15
-
-
0028924386
-
Promoter-proximal pausing of RNA polymerase II defines a general rate-limiting step after transcription initiation.
-
10.1101/gad.9.5.559, 7698646
-
Krumm A, Hickey LB, Groudine M. Promoter-proximal pausing of RNA polymerase II defines a general rate-limiting step after transcription initiation. Genes Dev 1995, 9:559-572. 10.1101/gad.9.5.559, 7698646.
-
(1995)
Genes Dev
, vol.9
, pp. 559-572
-
-
Krumm, A.1
Hickey, L.B.2
Groudine, M.3
-
16
-
-
0026440185
-
The block to transcriptional elongation within the human c-myc gene is determined in the promoter-proximal region.
-
10.1101/gad.6.11.2201, 1427080
-
Krumm A, Meulia T, Brunvand M, Groudine M. The block to transcriptional elongation within the human c-myc gene is determined in the promoter-proximal region. Genes Dev 1992, 6:2201-2213. 10.1101/gad.6.11.2201, 1427080.
-
(1992)
Genes Dev
, vol.6
, pp. 2201-2213
-
-
Krumm, A.1
Meulia, T.2
Brunvand, M.3
Groudine, M.4
-
17
-
-
34447098370
-
A chromatin landmark and transcription initiation at most promoters in human cells.
-
10.1016/j.cell.2007.05.042, 17632057
-
Guenther MG, Levine SS, Boyer LA, Jaenisch R, Young RA. A chromatin landmark and transcription initiation at most promoters in human cells. Cell 2007, 130:77-88. 10.1016/j.cell.2007.05.042, 17632057.
-
(2007)
Cell
, vol.130
, pp. 77-88
-
-
Guenther, M.G.1
Levine, S.S.2
Boyer, L.A.3
Jaenisch, R.4
Young, R.A.5
-
18
-
-
17044399754
-
Genome-wide analyses reveal RNA polymerase II located upstream of genes poised for rapid response upon S. cerevisiae stationary phase exit.
-
10.1016/j.molcel.2005.03.010, 15837421
-
Radonjic M, Andrau JC, Lijnzaad P, Kemmeren P, Kockelkorn TT, van Leenen D, van Berkum NL, Holstege FC. Genome-wide analyses reveal RNA polymerase II located upstream of genes poised for rapid response upon S. cerevisiae stationary phase exit. Mol Cell 2005, 18:171-183. 10.1016/j.molcel.2005.03.010, 15837421.
-
(2005)
Mol Cell
, vol.18
, pp. 171-183
-
-
Radonjic, M.1
Andrau, J.C.2
Lijnzaad, P.3
Kemmeren, P.4
Kockelkorn, T.T.5
van Leenen, D.6
van Berkum, N.L.7
Holstege, F.C.8
-
19
-
-
33847032960
-
The mammalian epigenome.
-
10.1016/j.cell.2007.01.033, 17320505
-
Bernstein BE, Meissner A, Lander ES. The mammalian epigenome. Cell 2007, 128:669-681. 10.1016/j.cell.2007.01.033, 17320505.
-
(2007)
Cell
, vol.128
, pp. 669-681
-
-
Bernstein, B.E.1
Meissner, A.2
Lander, E.S.3
-
20
-
-
36549061004
-
RNA polymerase is poised for activation across the genome.
-
10.1038/ng.2007.21, 2365887, 17994021
-
Muse GW, Gilchrist DA, Nechaev S, Shah R, Parker JS, Grissom SF, Zeitlinger J, Adelman K. RNA polymerase is poised for activation across the genome. Nat Genet 2007, 39:1507-1511. 10.1038/ng.2007.21, 2365887, 17994021.
-
(2007)
Nat Genet
, vol.39
, pp. 1507-1511
-
-
Muse, G.W.1
Gilchrist, D.A.2
Nechaev, S.3
Shah, R.4
Parker, J.S.5
Grissom, S.F.6
Zeitlinger, J.7
Adelman, K.8
-
21
-
-
36549013619
-
RNA polymerase stalling at developmental control genes in the Drosophila melanogaster embryo.
-
10.1038/ng.2007.26, 17994019
-
Zeitlinger J, Stark A, Kellis M, Hong JW, Nechaev S, Adelman K, Levine M, Young RA. RNA polymerase stalling at developmental control genes in the Drosophila melanogaster embryo. Nat Genet 2007, 39:1512-1516. 10.1038/ng.2007.26, 17994019.
-
(2007)
Nat Genet
, vol.39
, pp. 1512-1516
-
-
Zeitlinger, J.1
Stark, A.2
Kellis, M.3
Hong, J.W.4
Nechaev, S.5
Adelman, K.6
Levine, M.7
Young, R.A.8
-
22
-
-
41549134049
-
Poised polymerases: on your mark...get set...go!
-
10.1016/j.molcel.2008.03.001, 18406322
-
Price DH. Poised polymerases: on your mark...get set...go!. Mol Cell 2008, 30:7-10. 10.1016/j.molcel.2008.03.001, 18406322.
-
(2008)
Mol Cell
, vol.30
, pp. 7-10
-
-
Price, D.H.1
-
23
-
-
45849129033
-
Promoter-proximal Pol II: when stalling speeds things up.
-
Nechaev S, Adelman K. Promoter-proximal Pol II: when stalling speeds things up. Cell Cycle 2008, 7:1539-1544.
-
(2008)
Cell Cycle
, vol.7
, pp. 1539-1544
-
-
Nechaev, S.1
Adelman, K.2
-
24
-
-
34249026300
-
High-resolution profiling of histone methylations in the human genome.
-
10.1016/j.cell.2007.05.009, 17512414
-
Barski A, Cuddapah S, Cui K, Roh TY, Schones DE, Wang Z, Wei G, Chepelev I, Zhao K. High-resolution profiling of histone methylations in the human genome. Cell 2007, 129:823-837. 10.1016/j.cell.2007.05.009, 17512414.
-
(2007)
Cell
, vol.129
, pp. 823-837
-
-
Barski, A.1
Cuddapah, S.2
Cui, K.3
Roh, T.Y.4
Schones, D.E.5
Wang, Z.6
Wei, G.7
Chepelev, I.8
Zhao, K.9
-
25
-
-
33750488431
-
The genomic landscape of histone modifications in human T cells.
-
10.1073/pnas.0607617103, 1613230,1613230, 17043231
-
Roh TY, Cuddapah S, Cui K, Zhao K. The genomic landscape of histone modifications in human T cells. Proc Natl Acad Sci USA 2006, 103:15782-15787. 10.1073/pnas.0607617103, 1613230,1613230, 17043231.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 15782-15787
-
-
Roh, T.Y.1
Cuddapah, S.2
Cui, K.3
Zhao, K.4
-
26
-
-
14644406272
-
Active chromatin domains are defined by acetylation islands revealed by genome-wide mapping.
-
10.1101/gad.1272505, 551575, 15706033
-
Roh TY, Cuddapah S, Zhao K. Active chromatin domains are defined by acetylation islands revealed by genome-wide mapping. Genes Dev 2005, 19:542-552. 10.1101/gad.1272505, 551575, 15706033.
-
(2005)
Genes Dev
, vol.19
, pp. 542-552
-
-
Roh, T.Y.1
Cuddapah, S.2
Zhao, K.3
-
27
-
-
39749145198
-
Dynamic regulation of nucleosome positioning in the human genome.
-
10.1016/j.cell.2008.02.022, 18329373
-
Schones DE, Cui K, Cuddapah S, Roh TY, Barski A, Wang Z, Wei G, Zhao K. Dynamic regulation of nucleosome positioning in the human genome. Cell 2008, 132:887-898. 10.1016/j.cell.2008.02.022, 18329373.
-
(2008)
Cell
, vol.132
, pp. 887-898
-
-
Schones, D.E.1
Cui, K.2
Cuddapah, S.3
Roh, T.Y.4
Barski, A.5
Wang, Z.6
Wei, G.7
Zhao, K.8
-
28
-
-
46249112085
-
Combinatorial patterns of histone acetylations and methylations in the human genome.
-
10.1038/ng.154, 18552846
-
Wang Z, Zang C, Rosenfeld JA, Schones DE, Barski A, Cuddapah S, Cui K, Roh TY, Peng W, Zhang MQ, Zhao K. Combinatorial patterns of histone acetylations and methylations in the human genome. Nat Genet 2008, 40:897-903. 10.1038/ng.154, 18552846.
-
(2008)
Nat Genet
, vol.40
, pp. 897-903
-
-
Wang, Z.1
Zang, C.2
Rosenfeld, J.A.3
Schones, D.E.4
Barski, A.5
Cuddapah, S.6
Cui, K.7
Roh, T.Y.8
Peng, W.9
Zhang, M.Q.10
Zhao, K.11
-
29
-
-
16244411972
-
Histone dynamics on the interleukin-2 gene in response to T-cell activation.
-
10.1128/MCB.25.8.3209-3219.2005, 1069623, 15798206
-
Chen X, Wang J, Woltring D, Gerondakis S, Shannon MF. Histone dynamics on the interleukin-2 gene in response to T-cell activation. Mol Cell Biol 2005, 25:3209-3219. 10.1128/MCB.25.8.3209-3219.2005, 1069623, 15798206.
-
(2005)
Mol Cell Biol
, vol.25
, pp. 3209-3219
-
-
Chen, X.1
Wang, J.2
Woltring, D.3
Gerondakis, S.4
Shannon, M.F.5
-
30
-
-
33747587864
-
Model-based analysis of tiling-arrays for ChIP-chip.
-
10.1073/pnas.0601180103, 1567901, 16895995
-
Johnson WE, Li W, Meyer CA, Gottardo R, Carroll JS, Brown M, Liu XS. Model-based analysis of tiling-arrays for ChIP-chip. Proc Natl Acad Sci USA 2006, 103:12457-12462. 10.1073/pnas.0601180103, 1567901, 16895995.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 12457-12462
-
-
Johnson, W.E.1
Li, W.2
Meyer, C.A.3
Gottardo, R.4
Carroll, J.S.5
Brown, M.6
Liu, X.S.7
-
31
-
-
38049054726
-
Genome-wide mapping and analysis of active promoters in mouse embryonic stem cells and adult organs.
-
10.1101/gr.6654808, 2134779, 18042645
-
Barrera LO, Li Z, Smith AD, Arden KC, Cavenee WK, Zhang MQ, Green RD, Ren B. Genome-wide mapping and analysis of active promoters in mouse embryonic stem cells and adult organs. Genome Res 2008, 18:46-59. 10.1101/gr.6654808, 2134779, 18042645.
-
(2008)
Genome Res
, vol.18
, pp. 46-59
-
-
Barrera, L.O.1
Li, Z.2
Smith, A.D.3
Arden, K.C.4
Cavenee, W.K.5
Zhang, M.Q.6
Green, R.D.7
Ren, B.8
-
32
-
-
33645054803
-
Distinct gene expression in human Vdelta1 and Vdelta2 gammadelta T cells following non-TCR agonist stimulation.
-
10.1016/j.molimm.2005.11.011, 16423401
-
Kress E, Hedges JF, Jutila MA. Distinct gene expression in human Vdelta1 and Vdelta2 gammadelta T cells following non-TCR agonist stimulation. Mol Immunol 2006, 43:2002-2011. 10.1016/j.molimm.2005.11.011, 16423401.
-
(2006)
Mol Immunol
, vol.43
, pp. 2002-2011
-
-
Kress, E.1
Hedges, J.F.2
Jutila, M.A.3
-
33
-
-
2642570305
-
The histone modification pattern of active genes revealed through genome-wide chromatin analysis of a higher eukaryote.
-
10.1101/gad.1198204, 420352, 15175259
-
Schubeler D, MacAlpine DM, Scalzo D, Wirbelauer C, Kooperberg C, van Leeuwen F, Gottschling DE, O'Neill LP, Turner BM, Delrow J, Bell SP, Groudine M. The histone modification pattern of active genes revealed through genome-wide chromatin analysis of a higher eukaryote. Genes Dev 2004, 18:1263-1271. 10.1101/gad.1198204, 420352, 15175259.
-
(2004)
Genes Dev
, vol.18
, pp. 1263-1271
-
-
Schubeler, D.1
MacAlpine, D.M.2
Scalzo, D.3
Wirbelauer, C.4
Kooperberg, C.5
van Leeuwen, F.6
Gottschling, D.E.7
O'Neill, L.P.8
Turner, B.M.9
Delrow, J.10
Bell, S.P.11
Groudine, M.12
-
34
-
-
43049152845
-
Poised RNA polymerase II gives pause for thought.
-
10.1016/j.cell.2008.04.027, 18485867
-
Margaritis T, Holstege FC. Poised RNA polymerase II gives pause for thought. Cell 2008, 133:581-584. 10.1016/j.cell.2008.04.027, 18485867.
-
(2008)
Cell
, vol.133
, pp. 581-584
-
-
Margaritis, T.1
Holstege, F.C.2
-
35
-
-
20444380510
-
Spatial distribution of di- and tri-methyl lysine 36 of histone H3 at active genes.
-
10.1074/jbc.M500796200, 15760899
-
Bannister AJ, Schneider R, Myers FA, Thorne AW, Crane-Robinson C, Kouzarides T. Spatial distribution of di- and tri-methyl lysine 36 of histone H3 at active genes. J Biol Chem 2005, 280:17732-17736. 10.1074/jbc.M500796200, 15760899.
-
(2005)
J Biol Chem
, vol.280
, pp. 17732-17736
-
-
Bannister, A.J.1
Schneider, R.2
Myers, F.A.3
Thorne, A.W.4
Crane-Robinson, C.5
Kouzarides, T.6
-
36
-
-
33646903074
-
The interleukin-1beta gene is transcribed from a poised promoter architecture in monocytes.
-
10.1074/jbc.M510700200, 16439360
-
Liang MD, Zhang Y, McDevit D, Marecki S, Nikolajczyk BS. The interleukin-1beta gene is transcribed from a poised promoter architecture in monocytes. J Biol Chem 2006, 281:9227-9237. 10.1074/jbc.M510700200, 16439360.
-
(2006)
J Biol Chem
, vol.281
, pp. 9227-9237
-
-
Liang, M.D.1
Zhang, Y.2
McDevit, D.3
Marecki, S.4
Nikolajczyk, B.S.5
-
37
-
-
38549139593
-
Dynamic histone H3 methylation during gene induction: HYPB/Setd2 mediates all H3K36 trimethylation.
-
10.1038/sj.emboj.7601967, 2168397,2168397, 18157086
-
Edmunds JW, Mahadevan LC, Clayton AL. Dynamic histone H3 methylation during gene induction: HYPB/Setd2 mediates all H3K36 trimethylation. EMBO J 2008, 27:406-420. 10.1038/sj.emboj.7601967, 2168397,2168397, 18157086.
-
(2008)
EMBO J
, vol.27
, pp. 406-420
-
-
Edmunds, J.W.1
Mahadevan, L.C.2
Clayton, A.L.3
-
38
-
-
43349099904
-
Determinants of a transcriptionally competent environment at the GM-CSF promoter.
-
10.1093/nar/gkn117, 2377420, 18344520
-
Brettingham-Moore KH, Sprod OR, Chen X, Oakford P, Shannon MF, Holloway AF. Determinants of a transcriptionally competent environment at the GM-CSF promoter. Nucleic Acids Res 2008, 36:2639-2653. 10.1093/nar/gkn117, 2377420, 18344520.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 2639-2653
-
-
Brettingham-Moore, K.H.1
Sprod, O.R.2
Chen, X.3
Oakford, P.4
Shannon, M.F.5
Holloway, A.F.6
-
39
-
-
23844519339
-
A high-resolution map of active promoters in the human genome.
-
10.1038/nature03877, 1895599, 15988478
-
Kim TH, Barrera LO, Zheng M, Qu C, Singer MA, Richmond TA, Wu Y, Green RD, Ren B. A high-resolution map of active promoters in the human genome. Nature 2005, 436:876-880. 10.1038/nature03877, 1895599, 15988478.
-
(2005)
Nature
, vol.436
, pp. 876-880
-
-
Kim, T.H.1
Barrera, L.O.2
Zheng, M.3
Qu, C.4
Singer, M.A.5
Richmond, T.A.6
Wu, Y.7
Green, R.D.8
Ren, B.9
-
40
-
-
23944462969
-
Genome-wide map of nucleosome acetylation and methylation in yeast.
-
10.1016/j.cell.2005.06.026, 16122420
-
Pokholok DK, Harbison CT, Levine S, Cole M, Hannett NM, Lee TI, Bell GW, Walker K, Rolfe PA, Herbolsheimer E, Zeitlinger J, Lewitter F, Gifford DK, Young RA. Genome-wide map of nucleosome acetylation and methylation in yeast. Cell 2005, 122:517-527. 10.1016/j.cell.2005.06.026, 16122420.
-
(2005)
Cell
, vol.122
, pp. 517-527
-
-
Pokholok, D.K.1
Harbison, C.T.2
Levine, S.3
Cole, M.4
Hannett, N.M.5
Lee, T.I.6
Bell, G.W.7
Walker, K.8
Rolfe, P.A.9
Herbolsheimer, E.10
Zeitlinger, J.11
Lewitter, F.12
Gifford, D.K.13
Young, R.A.14
-
41
-
-
19944430797
-
Genomic maps and comparative analysis of histone modifications in human and mouse.
-
10.1016/j.cell.2005.01.001, 15680324
-
Bernstein BE, Kamal M, Lindblad-Toh K, Bekiranov S, Bailey DK, Huebert DJ, McMahon S, Karlsson EK, Kulbokas EJ, Gingeras TR, Schreiber SL, Lander ES. Genomic maps and comparative analysis of histone modifications in human and mouse. Cell 2005, 120:169-181. 10.1016/j.cell.2005.01.001, 15680324.
-
(2005)
Cell
, vol.120
, pp. 169-181
-
-
Bernstein, B.E.1
Kamal, M.2
Lindblad-Toh, K.3
Bekiranov, S.4
Bailey, D.K.5
Huebert, D.J.6
McMahon, S.7
Karlsson, E.K.8
Kulbokas, E.J.9
Gingeras, T.R.10
Schreiber, S.L.11
Lander, E.S.12
-
42
-
-
67649648237
-
Control of inducible gene expression by signal-dependent transcriptional elongation.
-
10.1016/j.cell.2009.05.047, 19596240
-
Hargreaves DC, Horng T, Medzhitov R. Control of inducible gene expression by signal-dependent transcriptional elongation. Cell 2009, 138:129-145. 10.1016/j.cell.2009.05.047, 19596240.
-
(2009)
Cell
, vol.138
, pp. 129-145
-
-
Hargreaves, D.C.1
Horng, T.2
Medzhitov, R.3
-
43
-
-
28544439524
-
Runx1 binds positive transcription elongation factor b and represses transcriptional elongation by RNA polymerase II: possible mechanism of CD4 silencing.
-
10.1128/MCB.25.24.10675-10683.2005, 1316947, 16314494
-
Jiang H, Zhang F, Kurosu T, Peterlin BM. Runx1 binds positive transcription elongation factor b and represses transcriptional elongation by RNA polymerase II: possible mechanism of CD4 silencing. Mol Cell Biol 2005, 25:10675-10683. 10.1128/MCB.25.24.10675-10683.2005, 1316947, 16314494.
-
(2005)
Mol Cell Biol
, vol.25
, pp. 10675-10683
-
-
Jiang, H.1
Zhang, F.2
Kurosu, T.3
Peterlin, B.M.4
-
44
-
-
33847381502
-
Gene-specific recruitment of positive and negative elongation factors during stimulated transcription of the MKP-1 gene in neuroendocrine cells.
-
10.1093/nar/gkl1138, 1807974, 17259211
-
Fujita T, Ryser S, Tortola S, Piuz I, Schlegel W. Gene-specific recruitment of positive and negative elongation factors during stimulated transcription of the MKP-1 gene in neuroendocrine cells. Nucleic Acids Res 2007, 35:1007-1017. 10.1093/nar/gkl1138, 1807974, 17259211.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 1007-1017
-
-
Fujita, T.1
Ryser, S.2
Tortola, S.3
Piuz, I.4
Schlegel, W.5
-
45
-
-
0029880348
-
Three functional classes of transcriptional activation domain.
-
231191, 8628270
-
Blau J, Xiao H, McCracken S, O'Hare P, Greenblatt J, Bentley D. Three functional classes of transcriptional activation domain. Mol Cell Biol 1996, 16:2044-2055. 231191, 8628270.
-
(1996)
Mol Cell Biol
, vol.16
, pp. 2044-2055
-
-
Blau, J.1
Xiao, H.2
McCracken, S.3
O'Hare, P.4
Greenblatt, J.5
Bentley, D.6
-
46
-
-
0034667792
-
Orchestrated response: a symphony of transcription factors for gene control.
-
10.1101/gad.831000, 11040209
-
Lemon B, Tjian R. Orchestrated response: a symphony of transcription factors for gene control. Genes Dev 2000, 14:2551-2569. 10.1101/gad.831000, 11040209.
-
(2000)
Genes Dev
, vol.14
, pp. 2551-2569
-
-
Lemon, B.1
Tjian, R.2
-
47
-
-
67649669255
-
A unifying model for the selective regulation of inducible transcription by CpG islands and nucleosome remodeling.
-
10.1016/j.cell.2009.04.020, 19596239
-
Ramirez-Carrozzi VR, Braas D, Bhatt DM, Cheng CS, Hong C, Doty KR, Black JC, Hoffmann A, Carey M, Smale ST. A unifying model for the selective regulation of inducible transcription by CpG islands and nucleosome remodeling. Cell 2009, 138:114-128. 10.1016/j.cell.2009.04.020, 19596239.
-
(2009)
Cell
, vol.138
, pp. 114-128
-
-
Ramirez-Carrozzi, V.R.1
Braas, D.2
Bhatt, D.M.3
Cheng, C.S.4
Hong, C.5
Doty, K.R.6
Black, J.C.7
Hoffmann, A.8
Carey, M.9
Smale, S.T.10
-
48
-
-
41649087840
-
High-resolution, genome-wide mapping of chromatin modifications by GMAT.
-
full_text, 18287625
-
Roh TY, Zhao K. High-resolution, genome-wide mapping of chromatin modifications by GMAT. Methods Mol Biol 2008, 387:95-108. full_text, 18287625.
-
(2008)
Methods Mol Biol
, vol.387
, pp. 95-108
-
-
Roh, T.Y.1
Zhao, K.2
-
49
-
-
0026049391
-
RNA polymerase II pauses at the 5' end of the transcriptionally induced Drosophila hsp70 gene.
-
361584, 1922045
-
O'Brien T, Lis JT. RNA polymerase II pauses at the 5' end of the transcriptionally induced Drosophila hsp70 gene. Mol Cell Biol 1991, 11:5285-5290. 361584, 1922045.
-
(1991)
Mol Cell Biol
, vol.11
, pp. 5285-5290
-
-
O'Brien, T.1
Lis, J.T.2
-
50
-
-
0024282827
-
The RNA polymerase II molecule at the 5' end of the uninduced hsp70 gene of D. melanogaster is transcriptionally engaged.
-
10.1016/S0092-8674(88)91087-2, 3136931
-
Rougvie AE, Lis JT. The RNA polymerase II molecule at the 5' end of the uninduced hsp70 gene of D. melanogaster is transcriptionally engaged. Cell 1988, 54:795-804. 10.1016/S0092-8674(88)91087-2, 3136931.
-
(1988)
Cell
, vol.54
, pp. 795-804
-
-
Rougvie, A.E.1
Lis, J.T.2
-
51
-
-
33748314757
-
Breaking barriers to transcription elongation.
-
10.1038/nrm1981, 16936696
-
Saunders A, Core LJ, Lis JT. Breaking barriers to transcription elongation. Nat Rev Mol Cell Biol 2006, 7:557-567. 10.1038/nrm1981, 16936696.
-
(2006)
Nat Rev Mol Cell Biol
, vol.7
, pp. 557-567
-
-
Saunders, A.1
Core, L.J.2
Lis, J.T.3
-
52
-
-
34147223557
-
A+U-rich instability elements differentially activate 5'-3' and 3'-5' mRNA decay.
-
10.1128/MCB.01445-06, 1899944, 17296726
-
Murray EL, Schoenberg DR. A+U-rich instability elements differentially activate 5'-3' and 3'-5' mRNA decay. Mol Cell Biol 2007, 27:2791-2799. 10.1128/MCB.01445-06, 1899944, 17296726.
-
(2007)
Mol Cell Biol
, vol.27
, pp. 2791-2799
-
-
Murray, E.L.1
Schoenberg, D.R.2
-
53
-
-
0033179335
-
HIV-1 Tat: coping with negative elongation factors.
-
10.1016/S0952-7915(99)80077-6, 10448148
-
Garber ME, Jones KA. HIV-1 Tat: coping with negative elongation factors. Curr Opin Immunol 1999, 11:460-465. 10.1016/S0952-7915(99)80077-6, 10448148.
-
(1999)
Curr Opin Immunol
, vol.11
, pp. 460-465
-
-
Garber, M.E.1
Jones, K.A.2
-
54
-
-
34147197211
-
C-Jun homodimers can function as a context-specific coactivator.
-
10.1128/MCB.00936-06, 1899927, 17283046
-
Grondin B, Lefrancois M, Tremblay M, Saint-Denis M, Haman A, Waga K, Bedard A, Tenen DG, Hoang T. c-Jun homodimers can function as a context-specific coactivator. Mol Cell Biol 2007, 27:2919-2933. 10.1128/MCB.00936-06, 1899927, 17283046.
-
(2007)
Mol Cell Biol
, vol.27
, pp. 2919-2933
-
-
Grondin, B.1
Lefrancois, M.2
Tremblay, M.3
Saint-Denis, M.4
Haman, A.5
Waga, K.6
Bedard, A.7
Tenen, D.G.8
Hoang, T.9
-
55
-
-
0035888026
-
Chromatin remodeling, measured by a novel real-time polymerase chain reaction assay, across the proximal promoter region of the IL-2 gene.
-
Rao S, Procko E, Shannon MF. Chromatin remodeling, measured by a novel real-time polymerase chain reaction assay, across the proximal promoter region of the IL-2 gene. J Immunol 2001, 167:4494-4503.
-
(2001)
J Immunol
, vol.167
, pp. 4494-4503
-
-
Rao, S.1
Procko, E.2
Shannon, M.F.3
|