RNA interference in Trypanosoma brucei: Role of the N-terminal RGG domain and the polyribosome association of argonaute

Journal of Biological Chemistry

Volumn 284, Issue 52, 2009, Pages 36511-36520

  Shi, Huafang ^a   Chamond, Nathalie ^a,b   Djikeng, Appolinaire ^a,c   Tschudi, Christian ^a,d   Ullu, Elisabetta ^a  

^a YALE UNIVERSITY SCHOOL OF MEDICINE   (United States)

^b UNIVERSITÉ PARIS DESCARTES   (France)

^c J CRAIG VENTER INSTITUTE   (United States)

^d NONE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANTISENSE; ARGININE RESIDUE; ARGONAUTE PROTEINS; CELLULAR LOCALIZATION; N-TERMINALS; RNA INTERFERENCE; RNA-INDUCED SILENCING COMPLEXES; TRYPANOSOMA BRUCEI;

AMINO ACIDS; MACHINERY; OLIGONUCLEOTIDES; RNA;

PROTEINS;

AMINO ACID; ARGININE; ARGONAUTE 1 PROTEIN; ARGONAUTE PROTEIN; GLYCINE; MESSENGER RNA; SINGLE STRANDED RNA; SMALL INTERFERING RNA;

AMINO TERMINAL SEQUENCE; ARTICLE; CELLULAR DISTRIBUTION; CONTROLLED STUDY; GENE MUTATION; GENETIC TRANSCRIPTION; NONHUMAN; POLYSOME; PRIORITY JOURNAL; RETROPOSON; RNA CLEAVAGE; RNA INTERFERENCE; SIGNAL TRANSDUCTION; TRYPANOSOMA BRUCEI;

POLYRIBOSOMES; PROTEIN STRUCTURE, TERTIARY; PROTOZOAN PROTEINS; RETROELEMENTS; RNA INTERFERENCE; RNA, MESSENGER; RNA, PROTOZOAN; RNA-BINDING PROTEINS; TRYPANOSOMA BRUCEI BRUCEI;

EUKARYOTA; TRYPANOSOMA BRUCEI;

EID: 73649140961     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M109.073072     Document Type: Article

References (54)

1. Färazi, T. A., Juranek, S. A., and Tuschl, T. (2008) Development 135, 1201-1214
2. Cerutti, H., and Casas-Mollano, J. A. (2006) Curr. Genet. 50, 81-99
3. Tolia, N. H., and Joshua-Tor, L. (2007) Nat. Chem. Biol. 3, 36-43
4. Hutvagner, G., and Simard, M. J. (2008) Nat. Rev. Mol. Cell Biol. 9, 22-32
5. Hammond, S. M., Boettcher, S., Caudy, A. A., Kobayashi, R., and Hannon, G. J. (2001) Science 293, 1146-1150
6. Meister, G., Landthaler, M., Patkaniowska, A., Dorsett, Y., Teng, G., and Tuschl, T. (2004) Mol. Cell 15, 185-197
7. Hammond, S. M., Bernstein, E., Beach, D., and Hannon, G. J. (2000) Nature 404, 293-296
8. Kiriakidou, M., Tan, G. S., Lamprinaki, S., De Planell-Saguer, M., Nelson, P. T., and Mourelatos, Z. (2007) Cell 129, 1141-1151
9. Eulalio, A., Huntzinger, E., and Izaurralde, E. (2008) Nat. Struct. Mol. Biol. 15, 346-353
10. Kinch, L. N., and Grishin, N. V. (2009) Biol. Direct. 4, 2
11. Meyer, W. J., Schreiber, S., Guo, Y., Volkmann, T., Welte, M. A., and Müller,H. A. (2006) PLoS Genet. 2, e134
12. Stoica, C., Carmichael, J. B., Parker, H., Pare, J., and Hobman, T. C. (2006) J. Biol. Chem. 281, 37646-37651
13. Shi, H., Ullu, E., and Tschudi, C. (2004) J. Biol. Chem. 279, 49889-49893
14. Kirino, Y., Kim, N., de Planell-Saguer, M., Khandros, E., Chiorean, S., Klein, P. S., Rigoutsos, I., Jongens, T. A., and Mourelatos, Z. (2009) Nat. Cell Biol. 11, 652-658
15. Vagin, V. V., Wohlschlegel, J., Qu, J., Jonsson, Z., Huang, X., Chuma, S., Girard, A., Sachidanandam, R., Hannon, G. J., and Aravin, A. A. (2009) Genes Dev. 23, 1749-1762
16. Shi, H., Djikeng, A., Tschudi, C., and Ullu, E. (2004) Mol. Cell Biol. 24, 420-427
17. Shi, H., Tschudi, C., and Ullu, E. (2006) RNA 12, 943-947
18. Djikeng, A., Shi, H., Tschudi, C., Shen, S., and Ullu, E. (2003) RNA 9, 802-808
19. Tuschl, T., Zamore, P. D., Lehmann, R., Bartel, D. P., and Sharp, P. A. (1999) Genes Dev. 13, 3191-3197
20. Gu, S., and Rossi, J. J. (2005) RNA 11, 38-44
21. Sen, G. L., Wehrman, T. S., and Blau, H. M. (2005) Differentiation 73, 287-293
22. Caudy, A. A., Myers, M., Hannon, G. J., and Hammond, S. M. (2002) Genes Dev. 16, 2491-2496
23. Caudy, A. A., Ketting, R. F., Hammond, S. M., Denli, A. M., Bathoorn, A. M., Tops, B. B., Silva, J. M., Myers, M. M., Hannon, G. J., and Plasterk, R. H. (2003) Nature 425, 411-414
24. Pham, J. W., Pellino, J. L., Lee, Y. S., Carthew, R. W., and Sontheimer, E. J. (2004) Cell 117, 83-94
25. Ishizuka, A., Siomi, M. C., and Siomi, H. (2002) Genes Dev. 16, 2497-2508
26. Kennerdell, J. R., Yamaguchi, S., and Carthew, R. W. (2002) Genes Dev. 16, 1884-1889
27. Nilsen, T. W. (2007) Trends Genet. 23, 243-249
28. Vasudevan, S., Tong, Y., and Steitz, J. A. (2007) Science 318, 1931-1934
29. Maroney, P. A., Yu, Y., Fisher, J., and Nilsen, T. W. (2006) Nat. Struct. Mol. Biol. 13, 1102-1107
30. Nottrott, S., Simard, M. J., and Richter, J. D. (2006) Nat. Struct. Mol. Biol. 13, 1108-1114
31. Djikeng, A., Shi, H., Tschudi, C., and Ullu, E. (2001) RNA 7, 1522-1530
32. Puig, O., Caspary, F., Rigaut, G., Rutz, B., Bouveret, E., Bragado-Nilsson, E., Wilm, M., and Séraphin, B. (2001) Methods 24, 218-229
33. Bangs, J. D., Uyetake, L., Brickman, M. J., Balber, A. E., and Boothroyd, J. C. (1993) J. Cell Sci. 105, 1101-1113
34. Hughes, K., Wand, M., Foulston, L., Young, R., Harley, K., Terry, S., Ersfeld, K., and Rudenko, G. (2007) EMBO J. 26, 2400-2410
35. Shi, H., Tschudi, C., and Ullu, E. (2007) RNA 13, 1132-1139
36. Durand-Dubief, M., and Bastin, P. (2003) BMC Biol. 1, 2
37. Ngô, H., Tschudi, C., Gull, K., and Ullu, E. (1998) Proc. Natl. Acad. Sci. U.S.A. 95, 14687-14692
38. Darnell, J. C., Jensen, K. B., Jin, P., Brown, V., Warren, S. T., and Darnell, R. B. (2001) Cell 107, 489-499
39. Ramos, A., Hollingworth, D., and Pastore, A. (2003) RNA 9, 1198-1207
40. Bedford, M. T. (2007) J. Cell Sci. 120, 4243-4246
41. Bedford, M. T., and Clarke, S. G. (2009) Mol. Cell 33, 1-13
42. Lerner, M. R., and Steitz, J. A. (1979) Proc. Natl. Acad. Sci. U.S.A. 76, 5495-5499
43. Brahms, H., Raymackers, J., Union, A., de Keyser, F., Meheus, L., and Lührmann, R. (2000) J. Biol. Chem. 275, 17122-17129
44. Miyoshi, K., Tsukumo, H., Nagami, T., Siomi, H., and Siomi, M. C. (2005) Genes Dev. 19, 2837-2848
45. Maiti, M., Lee, H. C., and Liu, Y. (2007) Genes Dev. 21, 590-600
46. Leuschner, P. J., Ameres, S. L., Kueng, S., and Martinez, J. (2006) EMBO Rep. 7, 314-320
47. Matranga, C., Tomari, Y., Shin, C., Bartel, D. P., and Zamore, P. D. (2005) Cell 123, 607-620
48. Rand, T. A., Petersen, S., Du, F., and Wang, X. (2005) Cell 123, 621-629
49. Kim, K., Lee, Y. S., and Carthew, R. W. (2007) RNA 13, 22-29
50. Ullu, E., Djikeng, A., Shi, H., and Tschudi, C. (2002) Philos. Trans. R Soc. Lond. B Biol. Sci. 357, 65-70
51. Brecht, M., and Parsons, M. (1998) Mol. Biochem. Parasitol. 97, 189-198
52. Pelletier, M., Pasternack, D. A., and Read, L. K. (2005) Mol. Biochem. Parasitol. 144, 206-217
53. Pasternack, D. A., Sayegh, J., Clarke, S., and Read, L. K. (2007) Eukaryot. Cell 6, 1665-1681
54. Stieger, J., Wyler, T., and Seebeck, T. (1984) J. Biol. Chem. 259, 4596-4602