메뉴 건너뛰기




Volumn 10, Issue , 2009, Pages

Tunicate mitogenomics and phylogenetics: Peculiarities of the Herdmania momus mitochondrial genome and support for the new chordate phylogeny

Author keywords

[No Author keywords available]

Indexed keywords

RIBOSOME RNA; TRANSFER RNA; MITOCHONDRIAL DNA;

EID: 71549149673     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-10-534     Document Type: Article
Times cited : (55)

References (75)
  • 1
    • 0033561361 scopus 로고    scopus 로고
    • Animal mitochondrial genomes
    • 10.1093/nar/27.8.1767, 148383, 10101183
    • Boore JL. Animal mitochondrial genomes. Nucleic Acids Res 1999, 27(8):1767-1780. 10.1093/nar/27.8.1767, 148383, 10101183.
    • (1999) Nucleic Acids Res , vol.27 , Issue.8 , pp. 1767-1780
    • Boore, J.L.1
  • 2
    • 52549130466 scopus 로고    scopus 로고
    • Evolution of the mitochondrial genome of Metazoa as exemplified by comparison of congeneric species
    • 10.1038/hdy.2008.62, 18612321
    • Gissi C, Iannelli F, Pesole G. Evolution of the mitochondrial genome of Metazoa as exemplified by comparison of congeneric species. Heredity 2008, 101(4):301-320. 10.1038/hdy.2008.62, 18612321.
    • (2008) Heredity , vol.101 , Issue.4 , pp. 301-320
    • Gissi, C.1    Iannelli, F.2    Pesole, G.3
  • 3
    • 33745988233 scopus 로고    scopus 로고
    • The use of genome-level characters for phylogenetic reconstruction
    • 10.1016/j.tree.2006.05.009, 16762445
    • Boore JL. The use of genome-level characters for phylogenetic reconstruction. Trends Ecol Evol 2006, 21(8):439-446. 10.1016/j.tree.2006.05.009, 16762445.
    • (2006) Trends Ecol Evol , vol.21 , Issue.8 , pp. 439-446
    • Boore, J.L.1
  • 4
    • 0031769998 scopus 로고    scopus 로고
    • Big trees from little genomes: mitochondrial gene order as a phylogenetic tool
    • 10.1016/S0959-437X(98)80035-X, 9914213
    • Boore JL, Brown WM. Big trees from little genomes: mitochondrial gene order as a phylogenetic tool. Curr Opin Genet Dev 1998, 8(6):668-674. 10.1016/S0959-437X(98)80035-X, 9914213.
    • (1998) Curr Opin Genet Dev , vol.8 , Issue.6 , pp. 668-674
    • Boore, J.L.1    Brown, W.M.2
  • 5
    • 0033213874 scopus 로고    scopus 로고
    • Mitogenomics: digging deeper with complete mitochondrial genomes
    • 10.1016/S0169-5347(99)01660-2, 10481201
    • Curole JP, Kocher TD. Mitogenomics: digging deeper with complete mitochondrial genomes. Trends Ecol Evol 1999, 14(10):394-398. 10.1016/S0169-5347(99)01660-2, 10481201.
    • (1999) Trends Ecol Evol , vol.14 , Issue.10 , pp. 394-398
    • Curole, J.P.1    Kocher, T.D.2
  • 6
    • 0034633762 scopus 로고    scopus 로고
    • Changes in mitochondrial genetic codes as phylogenetic characters: two examples from the flatworms
    • 10.1073/pnas.97.21.11359, 17205, 11027335
    • Telford MJ, Herniou EA, Russell RB, Littlewood DT. Changes in mitochondrial genetic codes as phylogenetic characters: two examples from the flatworms. Proc Natl Acad Sci USA 2000, 97(21):11359-11364. 10.1073/pnas.97.21.11359, 17205, 11027335.
    • (2000) Proc Natl Acad Sci USA , vol.97 , Issue.21 , pp. 11359-11364
    • Telford, M.J.1    Herniou, E.A.2    Russell, R.B.3    Littlewood, D.T.4
  • 7
    • 38049072789 scopus 로고    scopus 로고
    • DNA barcoding of animal species-response to DeSalle
    • 10.1002/bies.20698, 18081021
    • Waugh J, Huynen L, Millar C, Lambert D. DNA barcoding of animal species-response to DeSalle. Bioessays 2008, 30(1):92-93. 10.1002/bies.20698, 18081021.
    • (2008) Bioessays , vol.30 , Issue.1 , pp. 92-93
    • Waugh, J.1    Huynen, L.2    Millar, C.3    Lambert, D.4
  • 8
    • 42449136665 scopus 로고    scopus 로고
    • Mitochondrial DNA under siege in avian phylogeography
    • 10.1111/j.1365-294X.2008.03737.x, 18397219
    • Zink RM, Barrowclough GF. Mitochondrial DNA under siege in avian phylogeography. Mol Ecol 2008, 17(9):2107-2121. 10.1111/j.1365-294X.2008.03737.x, 18397219.
    • (2008) Mol Ecol , vol.17 , Issue.9 , pp. 2107-2121
    • Zink, R.M.1    Barrowclough, G.F.2
  • 9
    • 0032860013 scopus 로고    scopus 로고
    • Evolutionary genomics in Metazoa: the mitochondrial DNA as a model system
    • 10.1016/S0378-1119(99)00270-X, 10570997
    • Saccone C, De Giorgi C, Gissi C, Pesole G, Reyes A. Evolutionary genomics in Metazoa: the mitochondrial DNA as a model system. Gene 1999, 238(1):195-209. 10.1016/S0378-1119(99)00270-X, 10570997.
    • (1999) Gene , vol.238 , Issue.1 , pp. 195-209
    • Saccone, C.1    De Giorgi, C.2    Gissi, C.3    Pesole, G.4    Reyes, A.5
  • 10
    • 0037029128 scopus 로고    scopus 로고
    • Mitochondrial DNA in metazoa: degree of freedom in a frozen event
    • 10.1016/S0378-1119(01)00807-1, 11943454
    • Saccone C, Gissi C, Reyes A, Larizza A, Sbisa E, Pesole G. Mitochondrial DNA in metazoa: degree of freedom in a frozen event. Gene 2002, 286(1):3-12. 10.1016/S0378-1119(01)00807-1, 11943454.
    • (2002) Gene , vol.286 , Issue.1 , pp. 3-12
    • Saccone, C.1    Gissi, C.2    Reyes, A.3    Larizza, A.4    Sbisa, E.5    Pesole, G.6
  • 12
    • 33745180188 scopus 로고    scopus 로고
    • The complete mitochondrial genome of Flustrellidra hispida and the phylogenetic position of Bryozoa among the Metazoa
    • 10.1016/j.ympev.2006.03.007, 16621614
    • Waeschenbach A, Telford MJ, Porter JS, Littlewood DTJ. The complete mitochondrial genome of Flustrellidra hispida and the phylogenetic position of Bryozoa among the Metazoa. Mol Phylogenet Evol 2006, 40:195-207. 10.1016/j.ympev.2006.03.007, 16621614.
    • (2006) Mol Phylogenet Evol , vol.40 , pp. 195-207
    • Waeschenbach, A.1    Telford, M.J.2    Porter, J.S.3    Littlewood, D.T.J.4
  • 13
    • 38849129515 scopus 로고    scopus 로고
    • The mitochondrial genome of Phallusia mammillata and Phallusia fumigata (Tunicata, Ascidiacea): high genome plasticity at intra-genus level
    • 10.1186/1471-2148-7-155, 2220002, 17764550
    • Iannelli F, Griggio F, Pesole G, Gissi C. The mitochondrial genome of Phallusia mammillata and Phallusia fumigata (Tunicata, Ascidiacea): high genome plasticity at intra-genus level. BMC Evol Biol 2007, 7:155. 10.1186/1471-2148-7-155, 2220002, 17764550.
    • (2007) BMC Evol Biol , vol.7 , pp. 155
    • Iannelli, F.1    Griggio, F.2    Pesole, G.3    Gissi, C.4
  • 14
    • 0141742278 scopus 로고    scopus 로고
    • Transcript mapping and genome annotation of ascidian mtDNA using EST data
    • 10.1101/gr.1227803, 403730, 12915488
    • Gissi C, Pesole G. Transcript mapping and genome annotation of ascidian mtDNA using EST data. Genome Res 2003, 13:2203-2212. 10.1101/gr.1227803, 403730, 12915488.
    • (2003) Genome Res , vol.13 , pp. 2203-2212
    • Gissi, C.1    Pesole, G.2
  • 15
    • 0027214446 scopus 로고
    • Nucleotide sequence of cytochrome oxidase (subunit III) from the mitochondrion of the tunicate Pyura stolonifera: evidence that AGR encodes glycine
    • 10.1093/nar/21.15.3587, 331473, 8393993
    • Durrheim GA, Corfield VA, Harley EH, Ricketts MH. Nucleotide sequence of cytochrome oxidase (subunit III) from the mitochondrion of the tunicate Pyura stolonifera: evidence that AGR encodes glycine. Nucl Acids Res 1993, 21(15):3587-3588. 10.1093/nar/21.15.3587, 331473, 8393993.
    • (1993) Nucl Acids Res , vol.21 , Issue.15 , pp. 3587-3588
    • Durrheim, G.A.1    Corfield, V.A.2    Harley, E.H.3    Ricketts, M.H.4
  • 16
    • 44249087250 scopus 로고    scopus 로고
    • Conflict between translation initiation and elongation in vertebrate mitochondrial genomes
    • 10.1371/journal.pone.0000227, 1794132, 17311091
    • Xia X, Huang H, Carullo M, Betran E, Moriyama EN. Conflict between translation initiation and elongation in vertebrate mitochondrial genomes. PLoS One 2007, 2(2):e227. 10.1371/journal.pone.0000227, 1794132, 17311091.
    • (2007) PLoS One , vol.2 , Issue.2
    • Xia, X.1    Huang, H.2    Carullo, M.3    Betran, E.4    Moriyama, E.N.5
  • 17
    • 0033026967 scopus 로고    scopus 로고
    • Complete sequence, gene arrangement, and genetic code of mitochondrial DNA of the cephalochordate Branchiostoma floridae (Amphioxus)
    • Boore JL, Daehler LL, Brown WM. Complete sequence, gene arrangement, and genetic code of mitochondrial DNA of the cephalochordate Branchiostoma floridae (Amphioxus). Mol Biol Evol 1999, 16(3):410-418.
    • (1999) Mol Biol Evol , vol.16 , Issue.3 , pp. 410-418
    • Boore, J.L.1    Daehler, L.L.2    Brown, W.M.3
  • 18
    • 3142777033 scopus 로고    scopus 로고
    • Complete mtDNA of Ciona intestinalis reveals extensive gene rearrangement and the presence of an atp8 and an extra trnM gene in ascidians
    • 10.1007/s00239-003-2559-6, 15114417
    • Gissi C, Iannelli F, Pesole G. Complete mtDNA of Ciona intestinalis reveals extensive gene rearrangement and the presence of an atp8 and an extra trnM gene in ascidians. J Mol Evol 2004, 58(4):376-389. 10.1007/s00239-003-2559-6, 15114417.
    • (2004) J Mol Evol , vol.58 , Issue.4 , pp. 376-389
    • Gissi, C.1    Iannelli, F.2    Pesole, G.3
  • 19
    • 34547922775 scopus 로고    scopus 로고
    • Mitogenomics reveals two cryptic species in Ciona intestinalis
    • 10.1016/j.tig.2007.07.001, 17640763
    • Iannelli F, Pesole G, Sordino P, Gissi C. Mitogenomics reveals two cryptic species in Ciona intestinalis. Trends Genet 2007, 23(9):419-422. 10.1016/j.tig.2007.07.001, 17640763.
    • (2007) Trends Genet , vol.23 , Issue.9 , pp. 419-422
    • Iannelli, F.1    Pesole, G.2    Sordino, P.3    Gissi, C.4
  • 20
    • 11144292141 scopus 로고    scopus 로고
    • Complete nucleotide sequence of the mitochondrial genome of Doliolum nationalis with implications for evolution of urochordates
    • 10.1016/j.ympev.2004.10.002, 15619441
    • Yokobori S, Oshima T, Wada H. Complete nucleotide sequence of the mitochondrial genome of Doliolum nationalis with implications for evolution of urochordates. Mol Phylogenet Evol 2005, 34(2):273-283. 10.1016/j.ympev.2004.10.002, 15619441.
    • (2005) Mol Phylogenet Evol , vol.34 , Issue.2 , pp. 273-283
    • Yokobori, S.1    Oshima, T.2    Wada, H.3
  • 21
    • 0032729882 scopus 로고    scopus 로고
    • Complete DNA sequence of the mitochondrial genome of the ascidian Halocynthia roretzi (Chordata, Urochordata)
    • 1460873, 10581290
    • Yokobori S, Ueda T, Feldmaier-Fuchs G, Pääbo S, Ueshima R, Kondow A, Nishikawa K, Watanabe K. Complete DNA sequence of the mitochondrial genome of the ascidian Halocynthia roretzi (Chordata, Urochordata). Genetics 1999, 153(4):1851-1862. 1460873, 10581290.
    • (1999) Genetics , vol.153 , Issue.4 , pp. 1851-1862
    • Yokobori, S.1    Ueda, T.2    Feldmaier-Fuchs, G.3    Pääbo, S.4    Ueshima, R.5    Kondow, A.6    Nishikawa, K.7    Watanabe, K.8
  • 22
    • 0242364633 scopus 로고    scopus 로고
    • Mitochondrial genome of Ciona savignyi (Urochordata, Ascidiacea, Enterogona): comparison of gene arrangement and tRNA genes with Halocynthia roretzi mitochondrial genome
    • 10.1007/s00239-003-2511-9, 14738316
    • Yokobori S, Watanabe Y, Oshima T. Mitochondrial genome of Ciona savignyi (Urochordata, Ascidiacea, Enterogona): comparison of gene arrangement and tRNA genes with Halocynthia roretzi mitochondrial genome. J Mol Evol 2003, 57(5):574-587. 10.1007/s00239-003-2511-9, 14738316.
    • (2003) J Mol Evol , vol.57 , Issue.5 , pp. 574-587
    • Yokobori, S.1    Watanabe, Y.2    Oshima, T.3
  • 23
    • 2942623756 scopus 로고    scopus 로고
    • Invasion of a rocky intertidal shore by the tunicate Pyura praeputialis in the Bay of Antofagasta, Chile
    • 10.1073/pnas.0401921101, 423225, 15118086
    • Castilla JC, Guinez R, Caro AU, Ortiz V. Invasion of a rocky intertidal shore by the tunicate Pyura praeputialis in the Bay of Antofagasta, Chile. Proc Natl Acad Sci USA 2004, 101(23):8517-8524. 10.1073/pnas.0401921101, 423225, 15118086.
    • (2004) Proc Natl Acad Sci USA , vol.101 , Issue.23 , pp. 8517-8524
    • Castilla, J.C.1    Guinez, R.2    Caro, A.U.3    Ortiz, V.4
  • 24
    • 33846646035 scopus 로고    scopus 로고
    • Invasion of the southern Gulf of St. Lawrence by the clubbed tunicate (Styela clava Herdman): Potential mechanisms for invasions of Prince Edward Island estuaries
    • Locke A, Hanson JM, Ellis KM, Thompson J, Rochette R. Invasion of the southern Gulf of St. Lawrence by the clubbed tunicate (Styela clava Herdman): Potential mechanisms for invasions of Prince Edward Island estuaries. J Exp Mar Biol Ecol 2007, 342(1):69-77.
    • (2007) J Exp Mar Biol Ecol , vol.342 , Issue.1 , pp. 69-77
    • Locke, A.1    Hanson, J.M.2    Ellis, K.M.3    Thompson, J.4    Rochette, R.5
  • 25
    • 54849429443 scopus 로고    scopus 로고
    • Process of invasiveness among exotic tunicates in Prince Edward Island, Canada
    • Ramsay A, Davidson J, Landry T, Arsenault G. Process of invasiveness among exotic tunicates in Prince Edward Island, Canada. Biological Invasions 2008, 10(8):1311-1316.
    • (2008) Biological Invasions , vol.10 , Issue.8 , pp. 1311-1316
    • Ramsay, A.1    Davidson, J.2    Landry, T.3    Arsenault, G.4
  • 26
    • 45549101136 scopus 로고    scopus 로고
    • Predicting the potential distribution of the vase tunicate Ciona intestinalis in Canadian waters: informing a risk assessment
    • Therriault TW, Herborg LM. Predicting the potential distribution of the vase tunicate Ciona intestinalis in Canadian waters: informing a risk assessment. ICES J Mar Sci 2008, 65(5):788-794.
    • (2008) ICES J Mar Sci , vol.65 , Issue.5 , pp. 788-794
    • Therriault, T.W.1    Herborg, L.M.2
  • 27
    • 0037270345 scopus 로고    scopus 로고
    • Seeing chordate evolution through the Ciona genome sequence
    • 10.1186/gb-2003-4-3-208, 153453, 12620098
    • Cañestro C, Bassham S, Postlethwait JH. Seeing chordate evolution through the Ciona genome sequence. Genome Biol 2003, 4(3):208. 10.1186/gb-2003-4-3-208, 153453, 12620098.
    • (2003) Genome Biol , vol.4 , Issue.3 , pp. 208
    • Cañestro, C.1    Bassham, S.2    Postlethwait, J.H.3
  • 28
    • 36248946042 scopus 로고    scopus 로고
    • Evolutionary developmental biology and genomics
    • 10.1038/nrg2226, 18007650
    • Cañestro C, Yokoi H, Postlethwait JH. Evolutionary developmental biology and genomics. Nat Rev Genet 2007, 8(12):932-942. 10.1038/nrg2226, 18007650.
    • (2007) Nat Rev Genet , vol.8 , Issue.12 , pp. 932-942
    • Cañestro, C.1    Yokoi, H.2    Postlethwait, J.H.3
  • 29
    • 33847285387 scopus 로고    scopus 로고
    • Ciona intestinalis as a model for cardiac development
    • 10.1016/j.semcdb.2006.12.007, 1857341, 17223594
    • Davidson B. Ciona intestinalis as a model for cardiac development. Semin Cell Dev Biol 2007, 18(1):16-26. 10.1016/j.semcdb.2006.12.007, 1857341, 17223594.
    • (2007) Semin Cell Dev Biol , vol.18 , Issue.1 , pp. 16-26
    • Davidson, B.1
  • 30
    • 33846921832 scopus 로고    scopus 로고
    • Botryllus schlosseri: a model ascidian for the study of asexual reproduction
    • 10.1002/dvdy.21037, 17191252
    • Manni L, Zaniolo G, Cima F, Burighel P, Ballarin L. Botryllus schlosseri: a model ascidian for the study of asexual reproduction. Dev Dyn 2007, 236(2):335-352. 10.1002/dvdy.21037, 17191252.
    • (2007) Dev Dyn , vol.236 , Issue.2 , pp. 335-352
    • Manni, L.1    Zaniolo, G.2    Cima, F.3    Burighel, P.4    Ballarin, L.5
  • 33
    • 33747891749 scopus 로고    scopus 로고
    • Coloniality and sociality has evolved once in Stolidobranch ascidians
    • Zeng L, Jacobs M, Swalla B. Coloniality and sociality has evolved once in Stolidobranch ascidians. Integr Comp Biol 2006, 46:255-268.
    • (2006) Integr Comp Biol , vol.46 , pp. 255-268
    • Zeng, L.1    Jacobs, M.2    Swalla, B.3
  • 34
    • 21344453544 scopus 로고    scopus 로고
    • Molecular phylogeny of the protochordates: chordate evolution
    • Zeng L, Swalla B. Molecular phylogeny of the protochordates: chordate evolution. Can J Zool 2005, 83:24-33.
    • (2005) Can J Zool , vol.83 , pp. 24-33
    • Zeng, L.1    Swalla, B.2
  • 36
    • 52049092954 scopus 로고    scopus 로고
    • Testing the new animal phylogeny: a phylum level molecular analysis of the animal kingdom
    • 10.1016/j.ympev.2008.07.008, 18692145
    • Bourlat SJ, Nielsen C, Economou AD, Telford MJ. Testing the new animal phylogeny: a phylum level molecular analysis of the animal kingdom. Mol Phylogenet Evol 2008, 49(1):23-31. 10.1016/j.ympev.2008.07.008, 18692145.
    • (2008) Mol Phylogenet Evol , vol.49 , Issue.1 , pp. 23-31
    • Bourlat, S.J.1    Nielsen, C.2    Economou, A.D.3    Telford, M.J.4
  • 37
    • 67649523528 scopus 로고    scopus 로고
    • The mitochondrial genome structure of Xenoturbella bocki (phylum Xenoturbellida) is ancestral within the deuterostomes
    • 10.1186/1471-2148-9-107, 2697986, 19450249
    • Bourlat SJ, Rota-Stabelli O, Lanfear R, Telford MJ. The mitochondrial genome structure of Xenoturbella bocki (phylum Xenoturbellida) is ancestral within the deuterostomes. BMC Evol Biol 2009, 9:107. 10.1186/1471-2148-9-107, 2697986, 19450249.
    • (2009) BMC Evol Biol , vol.9 , pp. 107
    • Bourlat, S.J.1    Rota-Stabelli, O.2    Lanfear, R.3    Telford, M.J.4
  • 38
    • 48249140650 scopus 로고    scopus 로고
    • Adaptive evolution and functional redesign of core metabolic proteins in snakes
    • 10.1371/journal.pone.0002201, 2376058, 18493604
    • Castoe TA, Jiang ZJ, Gu W, Wang ZO, Pollock DD. Adaptive evolution and functional redesign of core metabolic proteins in snakes. PLoS ONE 2008, 3(5):e2201. 10.1371/journal.pone.0002201, 2376058, 18493604.
    • (2008) PLoS ONE , vol.3 , Issue.5
    • Castoe, T.A.1    Jiang, Z.J.2    Gu, W.3    Wang, Z.O.4    Pollock, D.D.5
  • 39
    • 62149098484 scopus 로고    scopus 로고
    • Revaluation of deuterostome phylogeny and evolutionary relationships among chordate subphyla using mitogenome data
    • 10.1016/S1673-8527(08)60102-2, 19302971
    • Zhong J, Zhang J, Mukwaya E, Wang Y. Revaluation of deuterostome phylogeny and evolutionary relationships among chordate subphyla using mitogenome data. J Genet Genomics 2009, 36(3):151-160. 10.1016/S1673-8527(08)60102-2, 19302971.
    • (2009) J Genet Genomics , vol.36 , Issue.3 , pp. 151-160
    • Zhong, J.1    Zhang, J.2    Mukwaya, E.3    Wang, Y.4
  • 40
    • 33644536713 scopus 로고    scopus 로고
    • Tunicates and not cephalochordates are the closest living relatives of vertebrates
    • 10.1038/nature04336, 16495997
    • Delsuc F, Brinkmann H, Chourrout D, Philippe H. Tunicates and not cephalochordates are the closest living relatives of vertebrates. Nature 2006, 439(7079):965-968. 10.1038/nature04336, 16495997.
    • (2006) Nature , vol.439 , Issue.7079 , pp. 965-968
    • Delsuc, F.1    Brinkmann, H.2    Chourrout, D.3    Philippe, H.4
  • 41
    • 67149095243 scopus 로고    scopus 로고
    • Additional molecular support for the new chordate phylogeny
    • 10.1002/dvg.20450, 19003928
    • Delsuc F, Tsagkogeorga G, Lartillot N, Philippe H. Additional molecular support for the new chordate phylogeny. Genesis 2008, 46(11):592-604. 10.1002/dvg.20450, 19003928.
    • (2008) Genesis , vol.46 , Issue.11 , pp. 592-604
    • Delsuc, F.1    Tsagkogeorga, G.2    Lartillot, N.3    Philippe, H.4
  • 44
    • 54849413888 scopus 로고    scopus 로고
    • The solitary ascidian Herdmania momus: native (Red Sea) versus non-indigenous (Mediterranean) populations
    • Shenkar N, Loya Y. The solitary ascidian Herdmania momus: native (Red Sea) versus non-indigenous (Mediterranean) populations. Biol Invasions 2008, 10(8):1431-1439.
    • (2008) Biol Invasions , vol.10 , Issue.8 , pp. 1431-1439
    • Shenkar, N.1    Loya, Y.2
  • 45
    • 10944225682 scopus 로고    scopus 로고
    • Evolution of the mitochondrial genome in Cephalochordata as inferred from complete nucleotide sequences from two Epigonichthys species
    • 10.1007/s00239-004-0238-x, 15883887
    • Nohara M, Nishida M, Miya M, Nishikawa T. Evolution of the mitochondrial genome in Cephalochordata as inferred from complete nucleotide sequences from two Epigonichthys species. J Mol Evol 2005, 60(4):526-537. 10.1007/s00239-004-0238-x, 15883887.
    • (2005) J Mol Evol , vol.60 , Issue.4 , pp. 526-537
    • Nohara, M.1    Nishida, M.2    Miya, M.3    Nishikawa, T.4
  • 46
    • 0031301965 scopus 로고    scopus 로고
    • Rodent monophyly: pitfalls of molecular phylogenies
    • Philippe H. Rodent monophyly: pitfalls of molecular phylogenies. J Mol Evol 1997, 45:712-715.
    • (1997) J Mol Evol , vol.45 , pp. 712-715
    • Philippe, H.1
  • 47
    • 33644586178 scopus 로고    scopus 로고
    • Combined mitochondrial and nuclear DNA sequences resolve the interrelations of the major Australasian marsupial radiations
    • 10.1080/10635150500481614, 16507529
    • Phillips MJ, McLenachan PA, Down C, Gibb GC, Penny D. Combined mitochondrial and nuclear DNA sequences resolve the interrelations of the major Australasian marsupial radiations. Syst Biol 2006, 55(1):122-137. 10.1080/10635150500481614, 16507529.
    • (2006) Syst Biol , vol.55 , Issue.1 , pp. 122-137
    • Phillips, M.J.1    McLenachan, P.A.2    Down, C.3    Gibb, G.C.4    Penny, D.5
  • 48
    • 33751439227 scopus 로고    scopus 로고
    • Animal phylogeny
    • 10.1016/j.cub.2006.10.048, 17141601
    • Telford MJ. Animal phylogeny. Curr Biol 2006, 16(23):R981-985. 10.1016/j.cub.2006.10.048, 17141601.
    • (2006) Curr Biol , vol.16 , Issue.23
    • Telford, M.J.1
  • 49
    • 53749090508 scopus 로고    scopus 로고
    • Empirical profile mixture models for phylogenetic reconstruction
    • 10.1093/bioinformatics/btn445, 18718941
    • Le SQ, Gascuel O, Lartillot N. Empirical profile mixture models for phylogenetic reconstruction. Bioinformatics 2008, 24(20):2317-2323. 10.1093/bioinformatics/btn445, 18718941.
    • (2008) Bioinformatics , vol.24 , Issue.20 , pp. 2317-2323
    • Le, S.Q.1    Gascuel, O.2    Lartillot, N.3
  • 50
    • 34248159030 scopus 로고    scopus 로고
    • Suppression of long-branch attraction artefacts in the animal phylogeny using a site-heterogeneous model
    • 10.1186/1471-2148-7-S1-S4, 1796613, 17288577
    • Lartillot N, Brinkmann H, Philippe H. Suppression of long-branch attraction artefacts in the animal phylogeny using a site-heterogeneous model. BMC Evol Biol 2007, 7(Suppl 1):S4. 10.1186/1471-2148-7-S1-S4, 1796613, 17288577.
    • (2007) BMC Evol Biol , vol.7 , Issue.SUPPL. 1
    • Lartillot, N.1    Brinkmann, H.2    Philippe, H.3
  • 51
    • 2442691520 scopus 로고    scopus 로고
    • A Bayesian mixture model for across-site heterogeneities in the amino-acid replacement process
    • 10.1093/molbev/msh112, 15014145
    • Lartillot N, Philippe H. A Bayesian mixture model for across-site heterogeneities in the amino-acid replacement process. Mol Biol Evol 2004, 21(6):1095-1109. 10.1093/molbev/msh112, 15014145.
    • (2004) Mol Biol Evol , vol.21 , Issue.6 , pp. 1095-1109
    • Lartillot, N.1    Philippe, H.2
  • 52
    • 47249122561 scopus 로고    scopus 로고
    • A site- and time-heterogeneous model of amino acid replacement
    • 10.1093/molbev/msn018, 18234708
    • Blanquart S, Lartillot N. A site- and time-heterogeneous model of amino acid replacement. Mol Biol Evol 2008, 25(5):842-858. 10.1093/molbev/msn018, 18234708.
    • (2008) Mol Biol Evol , vol.25 , Issue.5 , pp. 842-858
    • Blanquart, S.1    Lartillot, N.2
  • 53
    • 17744386162 scopus 로고    scopus 로고
    • Multigene analyses of bilaterian animals corroborate the monophyly of Ecdysozoa, Lophotrochozoa, and Protostomia
    • 10.1093/molbev/msi111, 15703236
    • Philippe H, Lartillot N, Brinkmann H. Multigene analyses of bilaterian animals corroborate the monophyly of Ecdysozoa, Lophotrochozoa, and Protostomia. Mol Biol Evol 2005, 22(5):1246-1253. 10.1093/molbev/msi111, 15703236.
    • (2005) Mol Biol Evol , vol.22 , Issue.5 , pp. 1246-1253
    • Philippe, H.1    Lartillot, N.2    Brinkmann, H.3
  • 54
    • 40549115956 scopus 로고    scopus 로고
    • Improvement of molecular phylogenetic inference and the phylogeny of Bilateria
    • 10.1098/rstb.2007.2236, 2615818, 18192187
    • Lartillot N, Philippe H. Improvement of molecular phylogenetic inference and the phylogeny of Bilateria. Philos Trans R Soc Lond B Biol Sci 2008, 363(1496):1463-1472. 10.1098/rstb.2007.2236, 2615818, 18192187.
    • (2008) Philos Trans R Soc Lond B Biol Sci , vol.363 , Issue.1496 , pp. 1463-1472
    • Lartillot, N.1    Philippe, H.2
  • 55
    • 0033224472 scopus 로고    scopus 로고
    • Hemichordates and deuterostome evolution: robust molecular phylogenetic support for a hemichordate + echinoderm clade
    • 10.1046/j.1525-142x.1999.99026.x, 11324101
    • Bromham LD, Degnan BM. Hemichordates and deuterostome evolution: robust molecular phylogenetic support for a hemichordate + echinoderm clade. Evol Dev 1999, 1(3):166-171. 10.1046/j.1525-142x.1999.99026.x, 11324101.
    • (1999) Evol Dev , vol.1 , Issue.3 , pp. 166-171
    • Bromham, L.D.1    Degnan, B.M.2
  • 56
    • 0031851503 scopus 로고    scopus 로고
    • Evolutionary history of free-swimming and sessile lifestyles in urochordates as deduced from 18S rDNA molecular phylogeny
    • Wada H. Evolutionary history of free-swimming and sessile lifestyles in urochordates as deduced from 18S rDNA molecular phylogeny. Mol Biol Evol 1998, 15(9):1189-1194.
    • (1998) Mol Biol Evol , vol.15 , Issue.9 , pp. 1189-1194
    • Wada, H.1
  • 57
    • 34548136104 scopus 로고    scopus 로고
    • Comparative mitochondrial genomics of snakes: extraordinary substitution rate dynamics and functionality of the duplicate control region
    • 10.1186/1471-2148-7-123, 1950710, 17655768
    • Jiang ZJ, Castoe TA, Austin CC, Burbrink FT, Herron MD, McGuire JA, Parkinson CL, Pollock DD. Comparative mitochondrial genomics of snakes: extraordinary substitution rate dynamics and functionality of the duplicate control region. BMC Evol Biol 2007, 7:123. 10.1186/1471-2148-7-123, 1950710, 17655768.
    • (2007) BMC Evol Biol , vol.7 , pp. 123
    • Jiang, Z.J.1    Castoe, T.A.2    Austin, C.C.3    Burbrink, F.T.4    Herron, M.D.5    McGuire, J.A.6    Parkinson, C.L.7    Pollock, D.D.8
  • 59
    • 0004136246 scopus 로고
    • Molecular cloning: a laboratory manual
    • New York: Cold Spring Harbor Laboratory Press, 2
    • Sambrook J, Fritsch EF, Maniatis T. Molecular cloning: a laboratory manual. 1989, New York: Cold Spring Harbor Laboratory Press, 2.
    • (1989)
    • Sambrook, J.1    Fritsch, E.F.2    Maniatis, T.3
  • 61
    • 84964787018 scopus 로고    scopus 로고
    • The NCBI ORF-Finder tool
    • The NCBI ORF-Finder tool. , http://www.ncbi.nlm.nih.gov/projects/gorf/
  • 62
    • 10244240599 scopus 로고    scopus 로고
    • Automatic annotation of organellar genomes with DOGMA
    • 10.1093/bioinformatics/bth352, 15180927
    • Wyman SK, Jansen RK, Boore JL. Automatic annotation of organellar genomes with DOGMA. Bioinformatics 2004, 20(17):3252-3255. 10.1093/bioinformatics/bth352, 15180927.
    • (2004) Bioinformatics , vol.20 , Issue.17 , pp. 3252-3255
    • Wyman, S.K.1    Jansen, R.K.2    Boore, J.L.3
  • 63
    • 0027083319 scopus 로고
    • Animal mitochondrial DNA: structure and evolution
    • 10.1016/S0074-7696(08)62066-5, 1452431
    • Wolstenholme DR. Animal mitochondrial DNA: structure and evolution. Int Rev Cytol 1992, 141:173-216. 10.1016/S0074-7696(08)62066-5, 1452431.
    • (1992) Int Rev Cytol , vol.141 , pp. 173-216
    • Wolstenholme, D.R.1
  • 64
    • 0030854739 scopus 로고    scopus 로고
    • TRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
    • 10.1093/nar/25.5.955, 146525, 9023104
    • Lowe TM, Eddy SR. tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res 1997, 25(5):955-964. 10.1093/nar/25.5.955, 146525, 9023104.
    • (1997) Nucleic Acids Res , vol.25 , Issue.5 , pp. 955-964
    • Lowe, T.M.1    Eddy, S.R.2
  • 65
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • 10.1093/nar/gkg595, 169194, 12824337
    • Zuker M. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res 2003, 31(13):3406-3415. 10.1093/nar/gkg595, 169194, 12824337.
    • (2003) Nucleic Acids Res , vol.31 , Issue.13 , pp. 3406-3415
    • Zuker, M.1
  • 66
    • 0037248815 scopus 로고    scopus 로고
    • OGRe: a relational database for comparative analysis of mitochondrial genomes
    • 10.1093/nar/gkg077, 165524, 12519982
    • Jameson D, Gibson AP, Hudelot C, Higgs PG. OGRe: a relational database for comparative analysis of mitochondrial genomes. Nucleic Acids Res 2003, 31(1):202-206. 10.1093/nar/gkg077, 165524, 12519982.
    • (2003) Nucleic Acids Res , vol.31 , Issue.1 , pp. 202-206
    • Jameson, D.1    Gibson, A.P.2    Hudelot, C.3    Higgs, P.G.4
  • 67
    • 13744252890 scopus 로고    scopus 로고
    • MAFFT version 5: improvement in accuracy of multiple sequence alignment
    • 10.1093/nar/gki198, 548345, 15661851
    • Katoh K, Kuma K, Toh H, Miyata T. MAFFT version 5: improvement in accuracy of multiple sequence alignment. Nucleic Acids Res 2005, 33(2):511-518. 10.1093/nar/gki198, 548345, 15661851.
    • (2005) Nucleic Acids Res , vol.33 , Issue.2 , pp. 511-518
    • Katoh, K.1    Kuma, K.2    Toh, H.3    Miyata, T.4
  • 68
    • 0034043778 scopus 로고    scopus 로고
    • Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
    • Castresana J. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol 2000, 17(4):540-552.
    • (2000) Mol Biol Evol , vol.17 , Issue.4 , pp. 540-552
    • Castresana, J.1
  • 69
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
    • 10.1080/10635150390235520, 14530136
    • Guindon S, Gascuel O. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 2003, 52(5):696-704. 10.1080/10635150390235520, 14530136.
    • (2003) Syst Biol , vol.52 , Issue.5 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 70
    • 0030451420 scopus 로고    scopus 로고
    • Among-site rate variation and its impact on phylogenetic analyses
    • Yang Z. Among-site rate variation and its impact on phylogenetic analyses. Trends Ecol Evol 1996, 11(9):367-372.
    • (1996) Trends Ecol Evol , vol.11 , Issue.9 , pp. 367-372
    • Yang, Z.1
  • 71
    • 0003437299 scopus 로고    scopus 로고
    • PHYLIP (PHYLogeny Inference Package)
    • Seattle: Department of Genome Sciences. University of Washington
    • Felsenstein J. PHYLIP (PHYLogeny Inference Package). Version 3.66 edn 2001, Seattle: Department of Genome Sciences. University of Washington.
    • (2001) Version 3.66 edn
    • Felsenstein, J.1
  • 72
    • 13444259388 scopus 로고    scopus 로고
    • TREEFINDER: a powerful graphical analysis environment for molecular phylogenetics
    • 10.1186/1471-2148-4-18, 459214, 15222900
    • Jobb G, von Haeseler A, Strimmer K. TREEFINDER: a powerful graphical analysis environment for molecular phylogenetics. BMC Evol Biol 2004, 4(1):18. 10.1186/1471-2148-4-18, 459214, 15222900.
    • (2004) BMC Evol Biol , vol.4 , Issue.1 , pp. 18
    • Jobb, G.1    von Haeseler, A.2    Strimmer, K.3
  • 73
    • 69949126557 scopus 로고    scopus 로고
    • PhyloBayes 3. A Bayesian software package for phylogenetic reconstruction and molecular dating
    • 10.1093/bioinformatics/btp368, 19535536
    • Lartillot N, Lepage T, Blanquart S. PhyloBayes 3. A Bayesian software package for phylogenetic reconstruction and molecular dating. Bioinformatics 2009, 25:2286-2288. 10.1093/bioinformatics/btp368, 19535536.
    • (2009) Bioinformatics , vol.25 , pp. 2286-2288
    • Lartillot, N.1    Lepage, T.2    Blanquart, S.3
  • 74
    • 33749595631 scopus 로고    scopus 로고
    • A Bayesian compound stochastic process for modeling nonstationary and nonhomogeneous sequence evolution
    • 10.1093/molbev/msl091, 16931538
    • Blanquart S, Lartillot N. A Bayesian compound stochastic process for modeling nonstationary and nonhomogeneous sequence evolution. Mol Biol Evol 2006, 23(11):2058-2071. 10.1093/molbev/msl091, 16931538.
    • (2006) Mol Biol Evol , vol.23 , Issue.11 , pp. 2058-2071
    • Blanquart, S.1    Lartillot, N.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.