메뉴 건너뛰기




Volumn 57, Issue 5, 2003, Pages 574-587

Mitochondrial Genome of Ciona savignyi (Urochordata, Ascidiacea, Enterogona): Comparison of Gene Arrangement and tRNA Genes with Halocynthia roretzi Mitochondrial Genome

Author keywords

Ciona savignyi; Gene arrangement; Mitochondrial genome; tRNA

Indexed keywords

AMINO ACID; PROTON TRANSPORTING ADENOSINE TRIPHOSPHATASE; TRANSFER RNA;

EID: 0242364633     PISSN: 00222844     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00239-003-2511-9     Document Type: Article
Times cited : (40)

References (54)
  • 1
    • 0004253597 scopus 로고    scopus 로고
    • Institute of Statistical Mathematics, Tokyo
    • Adachi J, Hasegawa M (1996) MOLPHY 2.3b. Institute of Statistical Mathematics, Tokyo
    • (1996) MOLPHY 2.3b
    • Adachi, J.1    Hasegawa, M.2
  • 3
    • 0029069238 scopus 로고
    • Nucleotide sequence and gene organization of the starfish Asterina pectinifera mitochondrial genome
    • Asakawa S, Himeno H, Miura K, Watanabe K (1995) Nucleotide sequence and gene organization of the starfish Asterina pectinifera mitochondrial genome. Genetics 140:1047-1060
    • (1995) Genetics , vol.140 , pp. 1047-1060
    • Asakawa, S.1    Himeno, H.2    Miura, K.3    Watanabe, K.4
  • 4
    • 0028211009 scopus 로고
    • PCR amplification of up to 35-kb DNA with high fidelity and high yield from lambda bacteriophage templates
    • Barnes WM (1994) PCR amplification of up to 35-kb DNA with high fidelity and high yield from lambda bacteriophage templates. Proc Natl Acad Sci USA 91:2216-2220
    • (1994) Proc Natl Acad Sci USA , vol.91 , pp. 2216-2220
    • Barnes, W.M.1
  • 5
    • 0031972433 scopus 로고    scopus 로고
    • The mitochondrial genome of the sea anemone Metridium senile (Cnidaria): Introns, a paucity of tRNa genes, and a near-standard genetic code
    • Beagley CT, Okimoto R, Wolstenholme DR (1998) The mitochondrial genome of the sea anemone Metridium senile (Cnidaria): Introns, a paucity of tRNA genes, and a near-standard genetic code. Genetics 148:1091-1108
    • (1998) Genetics , vol.148 , pp. 1091-1108
    • Beagley, C.T.1    Okimoto, R.2    Wolstenholme, D.R.3
  • 6
    • 0033561361 scopus 로고    scopus 로고
    • Animal mitochondrial genomes
    • Boore JL (1999) Animal mitochondrial genomes. Nucleic Acids Res 27:1767-1780
    • (1999) Nucleic Acids Res , vol.27 , pp. 1767-1780
    • Boore, J.L.1
  • 8
    • 0027981455 scopus 로고
    • Complete DNA sequence of the mitochondrial genome of the black chiton, Katharina tunicata
    • Boore JL, Brown WM (1994) Complete DNA sequence of the mitochondrial genome of the black chiton, Katharina tunicata. Genetics 138:423-443
    • (1994) Genetics , vol.138 , pp. 423-443
    • Boore, J.L.1    Brown, W.M.2
  • 9
    • 0033026967 scopus 로고    scopus 로고
    • Complete sequence, gene arrangement, and genetic code of mitochondrial DNA of the cephalochordate Branchiostoma floridae (Amphioxus)
    • Boore JL, Daehler LL, Brown WM (1999) Complete sequence, gene arrangement, and genetic code of mitochondrial DNA of the cephalochordate Branchiostoma floridae (Amphioxus). Mol Biol Evol 16:410-418
    • (1999) Mol Biol Evol , vol.16 , pp. 410-418
    • Boore, J.L.1    Daehler, L.L.2    Brown, W.M.3
  • 10
    • 0034043778 scopus 로고    scopus 로고
    • Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
    • Castresana J (2000) Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol 17:540-552
    • (2000) Mol Biol Evol , vol.17 , pp. 540-552
    • Castresana, J.1
  • 11
    • 0031770677 scopus 로고    scopus 로고
    • The mitochondrial genome of the hemichordate Balanoglossus carnosus and the evolution of deuterostome mitochondria
    • Castresana J, Feldmaier-Fuchs G, Yokobori S, Satoh N, Pääbo S (1998) The mitochondrial genome of the hemichordate Balanoglossus carnosus and the evolution of deuterostome mitochondria. Genetics 150:1115-1123
    • (1998) Genetics , vol.150 , pp. 1115-1123
    • Castresana, J.1    Feldmaier-Fuchs, G.2    Yokobori, S.3    Satoh, N.4    Pääbo, S.5
  • 12
    • 0022271984 scopus 로고
    • The mitochondrial DNA molecular of Drosophila yakuba: Nucleotide sequence, gene organization, and genetic code
    • Clary DO, Wolstenholme DR (1985) The mitochondrial DNA molecular of Drosophila yakuba: Nucleotide sequence, gene organization, and genetic code. J Mol Evol 22:252-271
    • (1985) J Mol Evol , vol.22 , pp. 252-271
    • Clary, D.O.1    Wolstenholme, D.R.2
  • 13
    • 0035172090 scopus 로고    scopus 로고
    • Evidence for import of a lysyl-tRNa into marsupial mitochondria
    • Dörner M, Altmann M, Pääbo S, Mörl M (2001) Evidence for import of a lysyl-tRNA into marsupial mitochondria. Mol Biol Cell 12:2688-2698
    • (2001) Mol Biol Cell , vol.12 , pp. 2688-2698
    • Dörner, M.1    Altmann, M.2    Pääbo, S.3    Mörl, M.4
  • 14
    • 0027214446 scopus 로고
    • Nucleotide sequence of cytochrome oxidase (subunit III) from the mitochondrion of the tunicate Pyura stolonifera: Evidence that AGR encodes glycine
    • Durrheim GA, Corfield VA, Harley EH, Ricketts MH (1993) Nucleotide sequence of cytochrome oxidase (subunit III) from the mitochondrion of the tunicate Pyura stolonifera: Evidence that AGR encodes glycine. Nucleic Acids Res 21:3587-3588
    • (1993) Nucleic Acids Res , vol.21 , pp. 3587-3588
    • Durrheim, G.A.1    Corfield, V.A.2    Harley, E.H.3    Ricketts, M.H.4
  • 15
    • 0034882968 scopus 로고    scopus 로고
    • The complete mitochondrial genome of the articulate brachiopod Terebratalia transversa
    • Helfenbein KG, Brown WM, Boore JL (2001) The complete mitochondrial genome of the articulate brachiopod Terebratalia transversa. Mol Biol Evol 18:1734-1744
    • (2001) Mol Biol Evol , vol.18 , pp. 1734-1744
    • Helfenbein, K.G.1    Brown, W.M.2    Boore, J.L.3
  • 16
    • 0026740213 scopus 로고
    • A novel mitochondrial genome organization for the blue mussel, Mytilus edulis
    • Hoffmann RJ, Boore JL, Brown WM (1992) A novel mitochondrial genome organization for the blue mussel, Mytilus edulis. Genetics 131:397-412
    • (1992) Genetics , vol.131 , pp. 397-412
    • Hoffmann, R.J.1    Boore, J.L.2    Brown, W.M.3
  • 17
    • 0032169062 scopus 로고    scopus 로고
    • The mitochondrial genome of Onchocerca volvulus: Sequence, structure and phylogenetic analysis
    • Keddie EM, Higazi T, Unnasch TR (1998) The mitochondrial genome of Onchocerca volvulus: Sequence, structure and phylogenetic analysis. Mol Biochem Parasitol 95:111-127
    • (1998) Mol Biochem Parasitol , vol.95 , pp. 111-127
    • Keddie, E.M.1    Higazi, T.2    Unnasch, T.R.3
  • 19
    • 0033563310 scopus 로고    scopus 로고
    • Gly found in ascidian mitochondria responsible for decoding non-universal codons AGA/AGG as glycine
    • Gly found in ascidian mitochondria responsible for decoding non-universal codons AGA/AGG as glycine. Nucleic Acids Res 27:2554-2559
    • (1999) Nucleic Acids Res , vol.27 , pp. 2554-2559
    • Kondow, A.1    Suzuki, T.2    Yokobori, S.3    Ueda, T.4    Watanabe, K.5
  • 20
    • 0028834126 scopus 로고
    • Complete sequence of a sea lamprey (Petromyzon marinus) mitochondrial genome: Early establishment of the vertebrate genome organization
    • Lee WJ, Kocher TD (1995) Complete sequence of a sea lamprey (Petromyzon marinus) mitochondrial genome: Early establishment of the vertebrate genome organization. Genetics 139:873-887
    • (1995) Genetics , vol.139 , pp. 873-887
    • Lee, W.J.1    Kocher, T.D.2
  • 22
    • 0023734317 scopus 로고
    • Codon and amino-acid specificities of a transfer RNa are both converted by a single post-transcriptional modification
    • Muramatsu T, Nishikawa K, Nemoto F, Kuchino Y, Nishimura S, Miyazawa T, Yokoyama S (1988) Codon and amino-acid specificities of a transfer RNA are both converted by a single post-transcriptional modification. Nature 336:179-181
    • (1988) Nature , vol.336 , pp. 179-181
    • Muramatsu, T.1    Nishikawa, K.2    Nemoto, F.3    Kuchino, Y.4    Nishimura, S.5    Miyazawa, T.6    Yokoyama, S.7
  • 23
    • 0027471446 scopus 로고
    • Primary structure of the gene for glycyl-tRNA synthetase from Bombyx mori
    • Nada S, Chang PK, Dignam JD (1993) Primary structure of the gene for glycyl-tRNA synthetase from Bombyx mori. J Biol Chem 268:7660-7667
    • (1993) J Biol Chem , vol.268 , pp. 7660-7667
    • Nada, S.1    Chang, P.K.2    Dignam, J.D.3
  • 25
    • 0034096751 scopus 로고    scopus 로고
    • The mitochondrial genome of the brachiopod Laqueus rubellus
    • Noguchi Y, Endo K, Tajima F, Ueshima R (2000) The mitochondrial genome of the brachiopod Laqueus rubellus. Genetics 155:245-259
    • (2000) Genetics , vol.155 , pp. 245-259
    • Noguchi, Y.1    Endo, K.2    Tajima, F.3    Ueshima, R.4
  • 26
    • 0025045479 scopus 로고
    • A set of tRNAs that lack either the TΨC arm or the dihydrouridine arm: Towards a minimal tRNa adaptor
    • Okimoto R, Wolstenholme DR (1990) A set of tRNAs that lack either the TΨC arm or the dihydrouridine arm: Towards a minimal tRNA adaptor. EMBO J 9:3405-3411
    • (1990) EMBO J , vol.9 , pp. 3405-3411
    • Okimoto, R.1    Wolstenholme, D.R.2
  • 27
    • 0026573893 scopus 로고
    • The mitochondrial genomes of two nematodes, Caenorhabditis elegans and Ascaris suum
    • Okimoto R, Macfarlane JL, Clary DO, Wolstenholme DR (1992) The mitochondrial genomes of two nematodes, Caenorhabditis elegans and Ascaris suum. Genetics 130:471-498
    • (1992) Genetics , vol.130 , pp. 471-498
    • Okimoto, R.1    Macfarlane, J.L.2    Clary, D.O.3    Wolstenholme, D.R.4
  • 28
    • 0002084108 scopus 로고
    • Initiator tRNAs and initiation of protein synthesis
    • D Söll, UL RajBhandary (eds) AMS Press, Washington, DC
    • RajBhandary UL, Chow CM (1995) Initiator tRNAs and initiation of protein synthesis. In: D Söll, UL RajBhandary (eds) tRNA: Structure, biosynthesis, and function. AMS Press, Washington, DC, pp 511-528
    • (1995) TRNA: Structure, Biosynthesis, and Function , pp. 511-528
    • RajBhandary, U.L.1    Chow, C.M.2
  • 29
    • 17144463123 scopus 로고    scopus 로고
    • Repair of tRNAs in metazoan mitochondria
    • Reichert AS, Mörl M (2000) Repair of tRNAs in metazoan mitochondria. Nucleic Acids Res 28:2043-2048
    • (2000) Nucleic Acids Res , vol.28 , pp. 2043-2048
    • Reichert, A.S.1    Mörl, M.2
  • 30
    • 0033610848 scopus 로고    scopus 로고
    • Processing and editing of overlapping tRNAs in human mitochondria
    • Reichert A, Rothbauer U, Mörl M (1998) Processing and editing of overlapping tRNAs in human mitochondria. J Biol Chem 273:31977-31984
    • (1998) J Biol Chem , vol.273 , pp. 31977-31984
    • Reichert, A.1    Rothbauer, U.2    Mörl, M.3
  • 31
    • 0031592477 scopus 로고    scopus 로고
    • Processing of human mitochondrial tRNA-Ser(AGY) GCU: A novel pathway in tRNa biosynthesis
    • Rossmanith W (1997) Processing of human mitochondrial tRNA-Ser(AGY) GCU: A novel pathway in tRNA biosynthesis. J Mol Biol 265:365-371
    • (1997) J Mol Biol , vol.265 , pp. 365-371
    • Rossmanith, W.1
  • 34
    • 0033025011 scopus 로고    scopus 로고
    • Gene contents and organization of a mitochondrial DNa segment of the squid Loligo bleekeri
    • Sasuga J, Yokobori S, Kaifu M, Ueda T, Nishikawa K, Watanabe K (1999) Gene contents and organization of a mitochondrial DNA segment of the squid Loligo bleekeri. J Mol Evol 46:692-702
    • (1999) J Mol Evol , vol.46 , pp. 692-702
    • Sasuga, J.1    Yokobori, S.2    Kaifu, M.3    Ueda, T.4    Nishikawa, K.5    Watanabe, K.6
  • 35
    • 0036205377 scopus 로고    scopus 로고
    • TREE-PUZZLE: Maximum likelihood phylogenetic analysis using quartets and parallel computing
    • Schmidt HA, Strimmer K, Vingron M, von Haeseler A (2002) TREE-PUZZLE: Maximum likelihood phylogenetic analysis using quartets and parallel computing. Bioinformatics 18:502-504
    • (2002) Bioinformatics , vol.18 , pp. 502-504
    • Schmidt, H.A.1    Strimmer, K.2    Vingron, M.3    Von Haeseler, A.4
  • 36
    • 0028348061 scopus 로고
    • Evolution of the WANCY region in amniote mitochondrial DNA
    • Seutin G, Lang BF, Mindell DP, Morais R (1994) Evolution of the WANCY region in amniote mitochondrial DNA. Mol Biol Evol 11:329-340
    • (1994) Mol Biol Evol , vol.11 , pp. 329-340
    • Seutin, G.1    Lang, B.F.2    Mindell, D.P.3    Morais, R.4
  • 38
    • 0032125592 scopus 로고    scopus 로고
    • Complete sequence of the amphioxus (Branchiostoma lanceolatum) mitochondrial genome: Relations to vertebrates
    • Spruyt N, Delarbre C, Gachelin G, Laudet V (1998) Complete sequence of the amphioxus (Branchiostoma lanceolatum) mitochondrial genome: relations to vertebrates. Nucleic Acids Res 26:3279-3285
    • (1998) Nucleic Acids Res , vol.26 , pp. 3279-3285
    • Spruyt, N.1    Delarbre, C.2    Gachelin, G.3    Laudet, V.4
  • 39
    • 0033595767 scopus 로고    scopus 로고
    • Analysis of the complete mitochondrial DNA sequence of the brachiopod Terebratulina retusa places Brachiopoda within the protostomes
    • Stechmann A, Schlegel M (1999) Analysis of the complete mitochondrial DNA sequence of the brachiopod Terebratulina retusa places Brachiopoda within the protostomes. Proc R Soc Lond B Biol Sci 266:2043-2052
    • (1999) Proc R Soc Lond B Biol Sci , vol.266 , pp. 2043-2052
    • Stechmann, A.1    Schlegel, M.2
  • 40
    • 0029836454 scopus 로고    scopus 로고
    • Quartet puzzling: A quartet maximum likelihood method for reconstructing tree topologies
    • Strimmer K, von Haeseler A (1996) Quartet puzzling: A quartet maximum likelihood method for reconstructing tree topologies. Mol Biol Evol 13:964-969
    • (1996) Mol Biol Evol , vol.13 , pp. 964-969
    • Strimmer, K.1    Von Haeseler, A.2
  • 42
    • 0032509302 scopus 로고    scopus 로고
    • Genome sequence of the nematode C. elegans: A platform for investigating biology
    • The C. elegans Sequencing Consortium (1998) Genome sequence of the nematode C. elegans: A platform for investigating biology. Science 282:2012-2018
    • (1998) Science , vol.282 , pp. 2012-2018
  • 43
    • 0036081052 scopus 로고    scopus 로고
    • The FlyBase database of the Drosophila genome projects and community literature
    • The FlyBase Consortium (2002) The FlyBase database of the Drosophila genome projects and community literature. Nucleic Acids Res 30:106-108
    • (2002) Nucleic Acids Res , vol.30 , pp. 106-108
  • 44
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876-4882
    • (1997) Nucleic Acids Res , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 45
    • 0036218106 scopus 로고    scopus 로고
    • The cephalopod Loligo bleekeri mitochondrial genome: Multiplied noncoding regions and transposition of tRNA genes
    • Tomita K, Yokobori S, Oshima T, Ueda T, Watanabe K (2002) The cephalopod Loligo bleekeri mitochondrial genome: Multiplied noncoding regions and transposition of tRNA genes. J Mol Evol 54:486-500
    • (2002) J Mol Evol , vol.54 , pp. 486-500
    • Tomita, K.1    Yokobori, S.2    Oshima, T.3    Ueda, T.4    Watanabe, K.5
  • 47
    • 0030683599 scopus 로고    scopus 로고
    • PAML: A program package for phylogenetic analysis by maximum likelihood
    • Yang Z (1997) PAML: A program package for phylogenetic analysis by maximum likelihood. Comput Appl Biosci 15:555-556
    • (1997) Comput Appl Biosci , vol.15 , pp. 555-556
    • Yang, Z.1
  • 48
    • 0028865434 scopus 로고
    • Transfer RNA editing in land snail mitochondria
    • Yokobori S, Pääbo S (1995a) Transfer RNA editing in land snail mitochondria. Proc Natl Acad Sci USA 92:10432-10435
    • (1995) Proc Natl Acad Sci USA , vol.92 , pp. 10432-10435
    • Yokobori, S.1    Pääbo, S.2
  • 49
    • 0029157426 scopus 로고
    • tRNA editing in metazoans
    • Yokobori S, Pääbo S (1995b) tRNA editing in metazoans. Nature 377:490
    • (1995) Nature , vol.377 , pp. 490
    • Yokobori, S.1    Pääbo, S.2
  • 51
    • 0027531459 scopus 로고
    • Codons AGA and AGG are read as glycine in ascidian mitochondria
    • Yokobori S, Ueda T, Watanabe K (1993) Codons AGA and AGG are read as glycine in ascidian mitochondria. J Mol Evol 36:1-8
    • (1993) J Mol Evol , vol.36 , pp. 1-8
    • Yokobori, S.1    Ueda, T.2    Watanabe, K.3
  • 53
    • 0034822301 scopus 로고    scopus 로고
    • Genetic code variations in mitochondria: tRNa as a major determinant of genetic code plasticity
    • Yokobori S, Suzuki T, Watanabe K (2001) Genetic code variations in mitochondria: tRNA as a major determinant of genetic code plasticity. J Mol Evol 53:314-326
    • (2001) J Mol Evol , vol.53 , pp. 314-326
    • Yokobori, S.1    Suzuki, T.2    Watanabe, K.3
  • 54
    • 0026325887 scopus 로고
    • Parallel origins of duplications and the formation of pseudogenes in mitochondrial DNA from parthenogenetic lizards (Heteronotia binoei; Gekkonidae)
    • Zevering CE, Moritz C, Heideman A, Sturm RA (1991) Parallel origins of duplications and the formation of pseudogenes in mitochondrial DNA from parthenogenetic lizards (Heteronotia binoei; Gekkonidae). J Mol Evol 3:431-441
    • (1991) J Mol Evol , vol.3 , pp. 431-441
    • Zevering, C.E.1    Moritz, C.2    Heideman, A.3    Sturm, R.A.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.