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Assays investigating the inhibition of TOPO IIα were carried out as per the protocol supplied by TopoGEN Inc., the source for purified human DNA TOPO IIα (p170 form) and pRYG DNA. The enzyme was incubated with the compound for 30 min at 37 °C. Subsequently SDS and proteinase K were added. The reaction was stopped with the appropriate TopoGEN stop buffer after 15 min of incubation. The assay and all appropriate controls were loaded on a 1% agarose gel in 1× TAE and run at 60 V for 2 h. The gel was then visualized using ethidium bromide staining. Compounds were assayed at 100 μM, decreasing the concentrations to 50 μM, 25 μM and 10 μM if compounds still exhibited inhibitory activity. All assays were completed in duplicate.
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