메뉴 건너뛰기




Volumn 4, Issue 10, 2009, Pages

Study of human RIG-I polymorphisms identifies two variants with an opposite impact on the antiviral immune response

Author keywords

[No Author keywords available]

Indexed keywords

ISOLEUCINE; RETINOIC ACID INDUCIBLE PROTEIN I; SERINE; ANTIVIRUS AGENT; DDX58 PROTEIN, HUMAN; DEAD BOX PROTEIN;

EID: 70449568252     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0007582     Document Type: Article
Times cited : (48)

References (51)
  • 1
    • 45549097192 scopus 로고    scopus 로고
    • Innate recognition of non-self nucleic acids
    • Chi H, Flavell RA (2008) Innate recognition of non-self nucleic acids. Genome Biol 9: 211.
    • (2008) Genome Biol , vol.9 , pp. 211
    • Chi, H.1    Flavell, R.A.2
  • 2
    • 44649119259 scopus 로고    scopus 로고
    • Regulation of mitochondrial antiviral signaling pathways
    • Moore CB, Ting JP (2008) Regulation of mitochondrial antiviral signaling pathways. Immunity 28: 735-739.
    • (2008) Immunity , vol.28 , pp. 735-739
    • Moore, C.B.1    Ting, J.P.2
  • 3
    • 39149107423 scopus 로고    scopus 로고
    • MDA5/RIG-I and virus recognition
    • Takeuchi O, Akira S (2008) MDA5/RIG-I and virus recognition. Curr Opin Immunol 20: 17-22.
    • (2008) Curr Opin Immunol , vol.20 , pp. 17-22
    • Takeuchi, O.1    Akira, S.2
  • 4
    • 48949094095 scopus 로고    scopus 로고
    • Structural Mechanism of RNA Recognition by the RIG-I-like Receptors
    • Yoneyama M, Fujita T (2008) Structural Mechanism of RNA Recognition by the RIG-I-like Receptors. Immunity 29: 178-181.
    • (2008) Immunity , vol.29 , pp. 178-181
    • Yoneyama, M.1    Fujita, T.2
  • 6
    • 33744828747 scopus 로고    scopus 로고
    • Inhibition of dsRNA-induced signaling in hepatitis C virus-infected cells by NS3 protease-dependent and -independent mechanisms
    • Cheng G, Zhong J, Chisari FV (2006) Inhibition of dsRNA-induced signaling in hepatitis C virus-infected cells by NS3 protease-dependent and -independent mechanisms. Proc Natl Acad Sci U S A 103: 8499-8504.
    • (2006) Proc Natl Acad Sci U S A , vol.103 , pp. 8499-8504
    • Cheng, G.1    Zhong, J.2    Chisari, F.V.3
  • 7
    • 33846307026 scopus 로고    scopus 로고
    • Regulation of innate antiviral defenses through a shared repressor domain in RIG-I and LGP2
    • Saito T, Hirai R, Loo YM, Owen D, Johnson CL, et al. (2007) Regulation of innate antiviral defenses through a shared repressor domain in RIG-I and LGP2. Proc Natl Acad Sci U S A 104: 582-587.
    • (2007) Proc Natl Acad Sci U S A , vol.104 , pp. 582-587
    • Saito, T.1    Hirai, R.2    Loo, Y.M.3    Owen, D.4    Johnson, C.L.5
  • 8
    • 33646342149 scopus 로고    scopus 로고
    • Differential roles of MDA5 and RIG-I helicases in the recognition of RNA viruses
    • Kato H, Takeuchi O, Sato S, Yoneyama M, Yamamoto M, et al. (2006) Differential roles of MDA5 and RIG-I helicases in the recognition of RNA viruses. Nature 441: 101-105.
    • (2006) Nature , vol.441 , pp. 101-105
    • Kato, H.1    Takeuchi, O.2    Sato, S.3    Yoneyama, M.4    Yamamoto, M.5
  • 9
    • 13944253573 scopus 로고    scopus 로고
    • Regulating intracellular antiviral defense and permissiveness to hepatitis C virus RNA replication through a cellular RNA helicase, RIG-I
    • Sumpter R, Jr., Loo YM, Foy E, Li K, Yoneyama M, et al. (2005) Regulating intracellular antiviral defense and permissiveness to hepatitis C virus RNA replication through a cellular RNA helicase, RIG-I. J Virol 79: 2689-2699.
    • (2005) J Virol , vol.79 , pp. 2689-2699
    • Sumpter Jr., R.1    Loo, Y.M.2    Foy, E.3    Li, K.4    Yoneyama, M.5
  • 10
    • 36348936640 scopus 로고    scopus 로고
    • Hepatitis C virus escape from the interferon regulatory factor 3 pathway by a passive and active evasion strategy
    • Binder M, Kochs G, Bartenschlager R, Lohmann V (2007) Hepatitis C virus escape from the interferon regulatory factor 3 pathway by a passive and active evasion strategy. Hepatology 46: 1365-1374.
    • (2007) Hepatology , vol.46 , pp. 1365-1374
    • Binder, M.1    Kochs, G.2    Bartenschlager, R.3    Lohmann, V.4
  • 11
    • 33846080259 scopus 로고    scopus 로고
    • Host and viral factors in the immunopathogenesis of primary hepatitis C virus infection
    • Lloyd AR, Jagger E, Post JJ, Crooks LA, Rawlinson WD, et al. (2007) Host and viral factors in the immunopathogenesis of primary hepatitis C virus infection. Immunol Cell Biol 85: 24-32.
    • (2007) Immunol Cell Biol , vol.85 , pp. 24-32
    • Lloyd, A.R.1    Jagger, E.2    Post, J.J.3    Crooks, L.A.4    Rawlinson, W.D.5
  • 12
    • 34248578768 scopus 로고    scopus 로고
    • Genetic polymorphisms in the chemokine and chemokine receptors: Impact on clinical course and therapy of the human immunodeficiency virus type 1 infection (HIV-1)
    • Reiche EM, Bonametti AM, Voltarelli JC,Morimoto HK, Watanabe MA (2007) Genetic polymorphisms in the chemokine and chemokine receptors: impact on clinical course and therapy of the human immunodeficiency virus type 1 infection (HIV-1). Curr Med Chem 14: 1325-1334.
    • (2007) Curr Med Chem , vol.14 , pp. 1325-1334
    • Reiche, E.M.1    Bonametti, A.M.2    Voltarelli, J.C.3    Morimoto, H.K.4    Watanabe, M.A.5
  • 13
    • 39549123040 scopus 로고    scopus 로고
    • Toll-like receptor polymorphisms and susceptibility to human disease
    • Misch EA, Hawn TR (2008) Toll-like receptor polymorphisms and susceptibility to human disease. Clin Sci (Lond) 114: 347-360.
    • (2008) Clin Sci (Lond) , vol.114 , pp. 347-360
    • Misch, E.A.1    Hawn, T.R.2
  • 14
    • 0036713510 scopus 로고    scopus 로고
    • Human non-synonymous SNPs: Server and survey
    • Ramensky V, Bork P, Sunyaev S (2002) Human non-synonymous SNPs: server and survey. Nucleic Acids Res 30: 3894-3900.
    • (2002) Nucleic Acids Res , vol.30 , pp. 3894-3900
    • Ramensky, V.1    Bork, P.2    Sunyaev, S.3
  • 15
    • 33947206046 scopus 로고    scopus 로고
    • Cutting Edge: Influenza A virus activates TLR3-dependent inflammatory and RIG-I-dependent antiviral responses in human lung epithelial cells
    • Le Goffic R, Pothlichet J, Vitour D, Fujita T, Meurs E, et al. (2007) Cutting Edge: Influenza A virus activates TLR3-dependent inflammatory and RIG-I-dependent antiviral responses in human lung epithelial cells. J Immunol 178: 3368-3372.
    • (2007) J Immunol , vol.178 , pp. 3368-3372
    • Le Goffic, R.1    Pothlichet, J.2    Vitour, D.3    Fujita, T.4    Meurs, E.5
  • 16
    • 23844438864 scopus 로고    scopus 로고
    • Shared and unique functions of the DExD/H-box helicases RIG-I, MDA5, and LGP2 in antiviral innate immunity
    • Yoneyama M, Kikuchi M, Matsumoto K, Imaizumi T, Miyagishi M, et al. (2005) Shared and unique functions of the DExD/H-box helicases RIG-I, MDA5, and LGP2 in antiviral innate immunity. J Immunol 175: 2851-2858.
    • (2005) J Immunol , vol.175 , pp. 2851-2858
    • Yoneyama, M.1    Kikuchi, M.2    Matsumoto, K.3    Imaizumi, T.4    Miyagishi, M.5
  • 17
    • 3242813113 scopus 로고    scopus 로고
    • The RNA helicase RIG-I has an essential function in double-stranded RNA-induced innate antiviral responses
    • Yoneyama M, Kikuchi M, Natsukawa T, Shinobu N, Imaizumi T, et al. (2004) The RNA helicase RIG-I has an essential function in double-stranded RNA-induced innate antiviral responses. Nat Immunol 5: 730-737.
    • (2004) Nat Immunol , vol.5 , pp. 730-737
    • Yoneyama, M.1    Kikuchi, M.2    Natsukawa, T.3    Shinobu, N.4    Imaizumi, T.5
  • 18
    • 34547434301 scopus 로고    scopus 로고
    • Double-stranded DNA and double-stranded RNA induce a common antiviral signaling pathway in human cells
    • Cheng G, Zhong J, Chung J, Chisari FV (2007) Double-stranded DNA and double-stranded RNA induce a common antiviral signaling pathway in human cells. Proc Natl Acad Sci U S A 104: 9035-9040.
    • (2007) Proc Natl Acad Sci U S A , vol.104 , pp. 9035-9040
    • Cheng, G.1    Zhong, J.2    Chung, J.3    Chisari, F.V.4
  • 20
    • 67649415364 scopus 로고    scopus 로고
    • Identification of loss of function mutations in human genes encoding RIG-I and mda5: Implications for resistance to type I diabetes
    • Shigemoto T, Kageyama M, Hirai R, Zheng J, Yoneyama M, et al. (2009) Identification of loss of function mutations in human genes encoding RIG-I and mda5: Implications for resistance to type I diabetes. J Biol Chem 284: 13348-13354.
    • (2009) J Biol Chem , vol.284 , pp. 13348-13354
    • Shigemoto, T.1    Kageyama, M.2    Hirai, R.3    Zheng, J.4    Yoneyama, M.5
  • 21
    • 34247341367 scopus 로고    scopus 로고
    • TRIM25 RING-finger E3 ubiquitin ligase is essential for RIG-I-mediated antiviral activity
    • Gack MU, Shin YC, Joo CH, Urano T, Liang C, et al. (2007) TRIM25 RING-finger E3 ubiquitin ligase is essential for RIG-I-mediated antiviral activity. Nature 446: 916-920.
    • (2007) Nature , vol.446 , pp. 916-920
    • Gack, M.U.1    Shin, Y.C.2    Joo, C.H.3    Urano, T.4    Liang, C.5
  • 22
    • 34247842740 scopus 로고    scopus 로고
    • The death domain superfamily in intracellular signaling of apoptosis and inflammation
    • Park HH, Lo YC, Lin SC, Wang L, Yang JK, et al. (2007) The death domain superfamily in intracellular signaling of apoptosis and inflammation. Annu Rev Immunol 25: 561-586.
    • (2007) Annu Rev Immunol , vol.25 , pp. 561-586
    • Park, H.H.1    Lo, Y.C.2    Lin, S.C.3    Wang, L.4    Yang, J.K.5
  • 23
    • 33645958613 scopus 로고    scopus 로고
    • TIR, CARD and PYRIN: Three domains for an antimicrobial triad
    • Werts C, Girardin SE, Philpott DJ (2006) TIR, CARD and PYRIN: three domains for an antimicrobial triad. Cell Death Differ 13: 798-815.
    • (2006) Cell Death Differ , vol.13 , pp. 798-815
    • Werts, C.1    Girardin, S.E.2    Philpott, D.J.3
  • 24
    • 37749004229 scopus 로고    scopus 로고
    • Structure-function relationships of Toll-like receptor domains through homology modelling and molecular dynamics
    • Kubarenko A, Frank M, Weber AN (2007) Structure-function relationships of Toll-like receptor domains through homology modelling and molecular dynamics. Biochem Soc Trans 35: 1515-1518.
    • (2007) Biochem Soc Trans , vol.35 , pp. 1515-1518
    • Kubarenko, A.1    Frank, M.2    Weber, A.N.3
  • 25
    • 33745109363 scopus 로고    scopus 로고
    • Protein misfolding disorders: Pathogenesis and intervention
    • Gregersen N (2006) Protein misfolding disorders: pathogenesis and intervention. J Inherit Metab Dis 29: 456-470.
    • (2006) J Inherit Metab Dis , vol.29 , pp. 456-470
    • Gregersen, N.1
  • 26
    • 0035859867 scopus 로고    scopus 로고
    • Mutations of peripheral myelin protein 22 result in defective trafficking through mechanisms which may be common to diseases involving tetraspan membrane proteins
    • Sanders CR, Ismail-Beigi F, McEnery MW (2001) Mutations of peripheral myelin protein 22 result in defective trafficking through mechanisms which may be common to diseases involving tetraspan membrane proteins. Biochemistry 40: 9453-9459.
    • (2001) Biochemistry , vol.40 , pp. 9453-9459
    • Sanders, C.R.1    Ismail-Beigi, F.2    McEnery, M.W.3
  • 27
    • 37749021979 scopus 로고    scopus 로고
    • An arms race: Innate antiviral responses and counteracting viral strategies
    • Schroder M, Bowie AG (2007) An arms race: innate antiviral responses and counteracting viral strategies. Biochem Soc Trans 35: 1512-1514.
    • (2007) Biochem Soc Trans , vol.35 , pp. 1512-1514
    • Schroder, M.1    Bowie, A.G.2
  • 28
    • 13844313862 scopus 로고    scopus 로고
    • Whole-genome patterns of common DNA variation in three human populations
    • Hinds DA, Stuve LL, Nilsen GB, Halperin E, Eskin E, et al. (2005) Whole-genome patterns of common DNA variation in three human populations. Science 307: 1072-1079.
    • (2005) Science , vol.307 , pp. 1072-1079
    • Hinds, D.A.1    Stuve, L.L.2    Nilsen, G.B.3    Halperin, E.4    Eskin, E.5
  • 29
    • 34247262207 scopus 로고    scopus 로고
    • Single-nucleotide polymorphisms and lung disease: Clinical implications
    • Tebbutt SJ, James A, Pare PD (2007) Single-nucleotide polymorphisms and lung disease: clinical implications. Chest 131: 1216-1223.
    • (2007) Chest , vol.131 , pp. 1216-1223
    • Tebbutt, S.J.1    James, A.2    Pare, P.D.3
  • 31
    • 33745240931 scopus 로고    scopus 로고
    • A genome-wide association study of nonsynonymous SNPs identifies a type 1 diabetes locus in the interferon-induced helicase (IFIH1) region
    • Smyth DJ, Cooper JD, Bailey R, Field S, Burren O, et al. (2006) A genome-wide association study of nonsynonymous SNPs identifies a type 1 diabetes locus in the interferon-induced helicase (IFIH1) region. Nat Genet 38: 617-619.
    • (2006) Nat Genet , vol.38 , pp. 617-619
    • Smyth, D.J.1    Cooper, J.D.2    Bailey, R.3    Field, S.4    Burren, O.5
  • 32
    • 55949131282 scopus 로고    scopus 로고
    • Roles of RIG-I N-terminal tandem CARD and splice variant in TRIM25-mediated antiviral signal transduction
    • Gack MU, Kirchhofer A, Shin YC, Inn KS, Liang C, et al. (2008) Roles of RIG-I N-terminal tandem CARD and splice variant in TRIM25-mediated antiviral signal transduction. Proc Natl Acad Sci U S A 105: 16743-16748.
    • (2008) Proc Natl Acad Sci U S A , vol.105 , pp. 16743-16748
    • Gack, M.U.1    Kirchhofer, A.2    Shin, Y.C.3    Inn, K.S.4    Liang, C.5
  • 34
    • 41849132440 scopus 로고    scopus 로고
    • Crystal structure of human IPS-1/ MAVS/VISA/Cardif caspase activation recruitment domain
    • Potter JA, Randall RE, Taylor GL (2008) Crystal structure of human IPS-1/ MAVS/VISA/Cardif caspase activation recruitment domain. BMC Struct Biol 8: 11.
    • (2008) BMC Struct Biol , vol.8 , pp. 11
    • Potter, J.A.1    Randall, R.E.2    Taylor, G.L.3
  • 35
    • 33748349224 scopus 로고    scopus 로고
    • The role of hydrophobic interactions in initiation and propagation of protein folding
    • Dyson HJ, Wright PE, Scheraga HA (2006) The role of hydrophobic interactions in initiation and propagation of protein folding. Proc Natl Acad Sci U S A 103: 13057-13061.
    • (2006) Proc Natl Acad Sci U S A , vol.103 , pp. 13057-13061
    • Dyson, H.J.1    Wright, P.E.2    Scheraga, H.A.3
  • 36
    • 0033613210 scopus 로고    scopus 로고
    • Solution structure of Apaf-1 CARD and its interaction with caspase-9 CARD: A structural basis for specific adaptor/caspase interaction
    • Zhou P, Chou J, Olea RS, Yuan J, Wagner G (1999) Solution structure of Apaf-1 CARD and its interaction with caspase-9 CARD: a structural basis for specific adaptor/caspase interaction. Proc Natl Acad Sci U S A 96: 11265-11270.
    • (1999) Proc Natl Acad Sci U S A , vol.96 , pp. 11265-11270
    • Zhou, P.1    Chou, J.2    Olea, R.S.3    Yuan, J.4    Wagner, G.5
  • 37
    • 40149110912 scopus 로고    scopus 로고
    • Identification of MAVS splicing variants that interfere with RIGI/MAVS pathway signaling
    • Lad SP, Yang G, Scott DA, Chao TH, Correia Jda S, et al. (2008) Identification of MAVS splicing variants that interfere with RIGI/MAVS pathway signaling. Mol Immunol 45: 2277-2287.
    • (2008) Mol Immunol , vol.45 , pp. 2277-2287
    • Lad, S.P.1    Yang, G.2    Scott, D.A.3    Chao, T.H.4    Correia Jda, S.5
  • 39
    • 42149119018 scopus 로고    scopus 로고
    • Cutting edge: Innate immune response triggered by influenza A virus is negatively regulated by SOCS1 and SOCS3 through a RIG-I/IFNAR1-dependent pathway
    • Pothlichet J, Chignard M, Si-Tahar M (2008) Cutting edge: innate immune response triggered by influenza A virus is negatively regulated by SOCS1 and SOCS3 through a RIG-I/IFNAR1-dependent pathway. J Immunol 180: 2034-2038.
    • (2008) J Immunol , vol.180 , pp. 2034-2038
    • Pothlichet, J.1    Chignard, M.2    Si-Tahar, M.3
  • 40
    • 35648940788 scopus 로고    scopus 로고
    • Measles virus V protein blocks Jak1-mediated phosphorylation of STAT1 to escape IFN-alpha/beta signaling
    • Caignard G, Guerbois M, Labernardiere JL, Jacob Y, Jones LM, et al. (2007) Measles virus V protein blocks Jak1-mediated phosphorylation of STAT1 to escape IFN-alpha/beta signaling. Virology 368: 351-362.
    • (2007) Virology , vol.368 , pp. 351-362
    • Caignard, G.1    Guerbois, M.2    Labernardiere, J.L.3    Jacob, Y.4    Jones, L.M.5
  • 41
    • 26844503987 scopus 로고    scopus 로고
    • The RNA helicase Lgp2 inhibits TLR-independent sensing of viral replication by retinoic acid-inducible gene-I
    • Rothenfusser S, Goutagny N, DiPerna G, Gong M, Monks BG, et al. (2005) The RNA helicase Lgp2 inhibits TLR-independent sensing of viral replication by retinoic acid-inducible gene-I. J Immunol 175: 5260-5268.
    • (2005) J Immunol , vol.175 , pp. 5260-5268
    • Rothenfusser, S.1    Goutagny, N.2    DiPerna, G.3    Gong, M.4    Monks, B.G.5
  • 42
    • 1642494708 scopus 로고    scopus 로고
    • Response of human pulmonary epithelial cells to lipopolysaccharide involves Toll-like receptor 4 (TLR4)-dependent signaling pathways: Evidence for an intracellular compartmentalization of TLR4
    • Guillot L, Medjane S, Le-Barillec K, Balloy V, Danel C, et al. (2004) Response of human pulmonary epithelial cells to lipopolysaccharide involves Toll-like receptor 4 (TLR4)-dependent signaling pathways: evidence for an intracellular compartmentalization of TLR4. J Biol Chem 279: 2712-2718.
    • (2004) J Biol Chem , vol.279 , pp. 2712-2718
    • Guillot, L.1    Medjane, S.2    Le-Barillec, K.3    Balloy, V.4    Danel, C.5
  • 43
    • 0032777410 scopus 로고    scopus 로고
    • Solution structure and mutagenesis of the caspase recruitment domain (CARD) from Apaf-1
    • Day CL, Dupont C, Lackmann M, Vaux DL, Hinds MG (1999) Solution structure and mutagenesis of the caspase recruitment domain (CARD) from Apaf-1. Cell Death Differ 6: 1125-1132.
    • (1999) Cell Death Differ , vol.6 , pp. 1125-1132
    • Day, C.L.1    Dupont, C.2    Lackmann, M.3    Vaux, D.L.4    Hinds, M.G.5
  • 44
    • 0032563323 scopus 로고    scopus 로고
    • Solution structure of the RAIDD CARD and model for CARD/CARD interaction in caspase-2 and caspase-9 recruitment
    • Chou JJ, Matsuo H, Duan H, Wagner G (1998) Solution structure of the RAIDD CARD and model for CARD/CARD interaction in caspase-2 and caspase-9 recruitment. Cell 94: 171-180.
    • (1998) Cell , vol.94 , pp. 171-180
    • Chou, J.J.1    Matsuo, H.2    Duan, H.3    Wagner, G.4
  • 46
    • 33751423867 scopus 로고    scopus 로고
    • Solution structure of NOD1 CARD and mutational analysis of its interaction with the CARD of downstream kinase RICK
    • Manon F, Favier A, Nunez G, Simorre JP, Cusack S (2007) Solution structure of NOD1 CARD and mutational analysis of its interaction with the CARD of downstream kinase RICK. J Mol Biol 365: 160-174.
    • (2007) J Mol Biol , vol.365 , pp. 160-174
    • Manon, F.1    Favier, A.2    Nunez, G.3    Simorre, J.P.4    Cusack, S.5
  • 47
    • 0034567210 scopus 로고    scopus 로고
    • Comparative protein structure modeling. Introduction and practical examples with modeller
    • Sanchez R, Sali A (2000) Comparative protein structure modeling. Introduction and practical examples with modeller. Methods Mol Biol 143: 97-129.
    • (2000) Methods Mol Biol , vol.143 , pp. 97-129
    • Sanchez, R.1    Sali, A.2
  • 48
    • 34248232474 scopus 로고    scopus 로고
    • HotPatch: A statistical approach to finding biologically relevant features on protein surfaces
    • Pettit FK, Bare E, Tsai A, Bowie JU (2007) HotPatch: a statistical approach to finding biologically relevant features on protein surfaces. J Mol Biol 369: 863-879.
    • (2007) J Mol Biol , vol.369 , pp. 863-879
    • Pettit, F.K.1    Bare, E.2    Tsai, A.3    Bowie, J.U.4
  • 49
    • 3242886771 scopus 로고    scopus 로고
    • PDB2PQR: An automated pipeline for the setup of Poisson-Boltzmann electrostatics calculations
    • Dolinsky TJ, Nielsen JE, McCammon JA, Baker NA (2004) PDB2PQR: an automated pipeline for the setup of Poisson-Boltzmann electrostatics calculations. Nucleic Acids Res 32: W665-667.
    • (2004) Nucleic Acids Res , vol.32
    • Dolinsky, T.J.1    Nielsen, J.E.2    McCammon, J.A.3    Baker, N.A.4
  • 50
    • 28644432877 scopus 로고    scopus 로고
    • Very fast empirical prediction and rationalization of protein pKa values
    • Li H, Robertson AD, Jensen JH (2005) Very fast empirical prediction and rationalization of protein pKa values. Proteins 61: 704-721.
    • (2005) Proteins , vol.61 , pp. 704-721
    • Li, H.1    Robertson, A.D.2    Jensen, J.H.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.