Binding of an aminoacridine derivative to a GAAA RNA tetraloop

Bioorganic and Medicinal Chemistry Letters

Volumn 14, Issue 23, 2004, Pages 5889-5893

  Yan, Zhaohui ^a   Baranger, Anne M ^a  

^a WESLEYAN UNIVERSITY   (United States)

Author keywords

2 Aminopurine; Aminoacridine; Fluorescence; Footprinting; Small molecule RNA complex; Tetraloop

Indexed keywords

2,4 DIAMINOQUINAZOLINE DERIVATIVE; AMINOACRIDINE DERIVATIVE; KANAMYCIN; LEAD ACETATE; MEPACRINE; NEOMYCIN; RIBONUCLEASE; RNA;

ARTICLE; BINDING AFFINITY; DISSOCIATION CONSTANT; DRUG BINDING; FLUORESCENCE SPECTROSCOPY; RNA BINDING; RNA STRUCTURE;

AMINOACRIDINES; NUCLEIC ACID CONFORMATION; PROTEIN BINDING; RNA;

EID: 7044247582     PISSN: 0960894X     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bmcl.2004.09.021     Document Type: Article

References (50)

1. V.A. Bloomfield, D.M. Crothers, and I. Tinoco Nucleic Acids: Structures, Properties, and Functions 2000 University Science Books Sausalito
2. C. Chow, and F. Bogdan Chem. Rev. 97 1997 1489 1513
3. S.J. Sucheck, W.A. Greenberg, T.J. Tolbert, and W.-H. Wong Angew. Chem. 39 2000 1080 1083
4. W.D. Wilson, and K. Li Curr. Med. Chem. 7 2000 73 98
5. J. Gallego, and G. Varani Acc. Chem. Res. 34 2001 836 843
6. T. Hermann Biopolymers 70 2003 4 18
7. V. Ramakrishnan Cell 108 2002 557 572
8. J.-M. Pérez-Canadillas, and G. Varani Curr. Opin. Struct. Biol. 11 2001 53 58
9. K.B. Hall Curr. Opin. Struct. Biol. 12 2002 283 288
10. T. Hermann, and D.J. Patel Structure 8 2000 R47 R54
11. W.D. Wilson, L. Ratmeyer, M.T. Cegla, J. Spychala, D. Boykin, M. Demeunynck, J. Llhomme, G. Krishnan, D. Kennedy, R. Vinayak, and G. Zon New. J. Chem. 18 1994 419 423
12. V. Ramakrishnan, and P.B. Moore Curr. Opin. Struct. Biol. 11 2001 144 154
13. W.G. Scott, J.T. Finch, and A. Klug Cell 81 1995 991 1002
14. J.H. Cate, A.R. Gooding, E. Podell, K. Zhou, B.L. Golden, C.E. Kundrot, T.R. Cech, and J.A. Doudna Science 273 1996 1678 1685
15. P. Nissen, J.A. Ippolito, N. Ban, P.B. Moore, and T.A. Steitz Proc. Natl. Acad. Sci. U.S.A. 98 2001 4899 4903
16. B.T. Wimberly, D.E. Brodersen, W.M. Clemmons, R.J. Morgan-Warren, A.P. Carter, C. Vonrhein, T. Hartsch, and V. Ramakrishnan Nature 407 2000 327 339
17. C.R. Woese, S. Winker, and R.R. Gutell Proc. Natl. Acad. Sci. U.S.A. 87 1990 8467 8471
18. C. Tuerk, P. Gauss, C. Thermes, D.R. Groebe, M. Gayle, N. Guild, G. Stormo, Y. D'Aubenton-Carafa, O. Uhlenbeck, I. Tinoco, E.N. Brody, and L. Gold Proc. Natl. Acad. Sci. U.S.A. 85 1988 1364 1368
19. G. Varani Annu. Rev. Biophys. Biomol. Struct. 24 1995 379 404
20. P.B. Moore Annu. Rev. Biochem. 67 1999 287 300
21. J.K. Strauss-Soukup, and S.A. Strobel J. Mol. Biol. 302 2000 339 358
22. H. Qin, T.R. Sosnick, and T. Pan Biochemistry 40 2001 11202 11210
23. M. Boudvillain, and A.M. Pyle EMBO J. 17 1998 7091 7104
24. B.T. Young, and S.K. Silverman Biochemistry 41 2002 12271 12276
25. A. Zeffman, S. Hassard, G. Varani, and A. Lever J. Mol. Biol. 297 2000 877 893
26. A. Glück, Y. Endo, and I.G. Wool J. Mol. Biol. 226 1992 411 424
27. J.R. Jagath, N.B. Matassova, E. De Leeuw, J.M. Warnecke, G. Lentzen, M.V. Rodnina, J. Luirink, and W. Wintermeyer RNA 7 2001 293 301
28. H.A. Heus, and A. Pardi Science 253 1991 191 194
29. C.C. Correll, I.G. Wool, and A. Munishkin J. Mol. Biol. 292 1999 275 287
30. H.W. Pley, K.M. Flaherty, and D.B. McKay Nature 372 1994 68 74
31. M. Perbandt, A. Nolte, S. Lorenz, R. Bald, C. Betzel, and V.A. Erdmann FEBS Lett. 429 1998 211 215
32. F.H.-T. Allain, and G. Varani J. Mol. Biol. 250 1995 333 353
33. B. Varani, C. Cheong, and I. Tinoco Biochemistry 30 1991 3280 3289
34. C.C. Correll, and K. Swinger RNA 9 2003 355 363
35. F.M. Jucker, H.A. Heus, P.F. Yip, E.H.M. Moors, and A. Pardi J. Mol. Biol. 264 1996 968 980
36. V.P. Antao, S.Y. Lai, and I. Tinoco Nucleic Acids Res. 19 1991 5901 5905
37. H.-Y. Mei, M. Cui, A. Heldsinger, S.M. Lemrow, J.A. Loo, K.A. Sannes-Lowery, L. Sharmeen, and A.W. Czarnik Biochemistry 37 1998 14204 14212
38. N. Gelus, F. Hamy, and C. Bailly Bioorg. Med. Chem. 7 1999 1075 1079
39. F. Hamy, V. Brondani, A. Flörsheimer, W. Stark, M.J.J. Blommers, and T. Klimkait Biochemistry 37 1998 5086 5095
40. J. Johnson, E.F. Elslager, and L.M. Werbel J. Heterocycl. Chem. 16 1979 1101 1104
41. J. Davoll, and A.M. Johnson J. Chem. Soc. (C) 1970 977 1002
42. J.B.-H. Tok, L.J. Dunn, and R.C. Des Jean Bioorg. Med. Chem. Lett. 11 2001 1127 1131
43. J. Cho, and R.R. Rando Nucleic Acids Res. 28 2000 2158 2163
44. B. Llano-Sotelo, and C.S. Chow Bioorg. Med. Chem. Lett. 8 1999 213 216
45. J.E. Barrick, and R.W. Roberts Biochemistry 42 2003 12998 13007
46. J. Meador, and D. Kennell Gene 95 1990 1 7
47. J. Meador, and B. Cannon Eur. J. Biochem. 187 1990 549 553
48. K. Li, M. Fernandez-Saiz, C.T. Rigl, A. Kumar, K.G. Ragunathan, A.W. McConnaughie, D.W. Boykin, H.-J. Schneider, and W.D. Wilson Bioorg. Med. Chem. 5 1997 1157 1172
49. A. Litovchik, A.G. Evdokimov, and A. Lapidot Biochemistry 39 2000 2838 2852
50. A.Y. Gayle, and A.M. Baranger Bioorg. Med. Chem. Lett. 12 2002 2839 2842