-
1
-
-
0031790171
-
A specific monovalent metal ion integral to the AA platform of the RNA tetraloop receptor
-
Basu S., Rambo R. P., Strauss-Soukup J., Cate J. H., Ferred D. A. A. R., Strobel S. A., Doudna J. A. A specific monovalent metal ion integral to the AA platform of the RNA tetraloop receptor. Nature Struct. Biol. 5:1998;986-992.
-
(1998)
Nature Struct. Biol.
, vol.5
, pp. 986-992
-
-
Basu, S.1
Rambo, R.P.2
Strauss-Soukup, J.3
Cate, J.H.4
Ferred, D.A.A.R.5
Strobel, S.A.6
Doudna, J.A.7
-
2
-
-
0028078797
-
Mutations in 23 S ribosomal RNA perturb transfer RNA selection and can lead to streptomycin dependence
-
Bilgin N., Ehrenberg M. Mutations in 23 S ribosomal RNA perturb transfer RNA selection and can lead to streptomycin dependence. J. Mol. Biol. 235:1994;813-824.
-
(1994)
J. Mol. Biol.
, vol.235
, pp. 813-824
-
-
Bilgin, N.1
Ehrenberg, M.2
-
5
-
-
0029820625
-
Crystal structure of a group I ribozyme domain: Principles of RNA packing
-
Cate J. H., Gooding A. R., Podell E., Zhou K., Golden B. L., Kundrot C. E., Cech T. R., Doudna J. A. Crystal structure of a group I ribozyme domain: principles of RNA packing. Science. 273:1996a;1678-1685.
-
(1996)
Science
, vol.273
, pp. 1678-1685
-
-
Cate, J.H.1
Gooding, A.R.2
Podell, E.3
Zhou, K.4
Golden, B.L.5
Kundrot, C.E.6
Cech, T.R.7
Doudna, J.A.8
-
6
-
-
0029796982
-
RNA tertiary structure mediation by adenosine platforms
-
Cate J. H., Gooding A. R., Podell E., Zhou K., Golden B. L., Szewczak A. A., Kundrot C. E., Cech T. R., Doudna J. A. RNA tertiary structure mediation by adenosine platforms. Science. 273:1996b;1696-1699.
-
(1996)
Science
, vol.273
, pp. 1696-1699
-
-
Cate, J.H.1
Gooding, A.R.2
Podell, E.3
Zhou, K.4
Golden, B.L.5
Szewczak, A.A.6
Kundrot, C.E.7
Cech, T.R.8
Doudna, J.A.9
-
7
-
-
0033553625
-
Crystal structure of a conserved ribosomal protein-RNA complex
-
Conn G. L., Draper D. E., Lattman E. E., Gittis A. G. Crystal structure of a conserved ribosomal protein-RNA complex. Science. 284:1999;1171-1174.
-
(1999)
Science
, vol.284
, pp. 1171-1174
-
-
Conn, G.L.1
Draper, D.E.2
Lattman, E.E.3
Gittis, A.G.4
-
8
-
-
0030856333
-
Metals, motifs, and recognition in the crystal structure of a 5 S rRNA domain
-
Correll C. C., Freeborn B., Moore P. B., Steitz T. A. Metals, motifs, and recognition in the crystal structure of a 5 S rRNA domain. Cell. 91:1997;705-712.
-
(1997)
Cell
, vol.91
, pp. 705-712
-
-
Correll, C.C.1
Freeborn, B.2
Moore, P.B.3
Steitz, T.A.4
-
9
-
-
0032505999
-
Crystal structure of the ribosomal RNA domain essential for binding elongation factors
-
Correll C. C., Munishkin A., Chan Y. L., Ren Z., Wool I. G., Steitz T. A. Crystal structure of the ribosomal RNA domain essential for binding elongation factors. Proc. Natl Acad. Sci. USA. 95:1998;13436-13441.
-
(1998)
Proc. Natl Acad. Sci. USA
, vol.95
, pp. 13436-13441
-
-
Correll, C.C.1
Munishkin, A.2
Chan, Y.L.3
Ren, Z.4
Wool, I.G.5
Steitz, T.A.6
-
10
-
-
0023665268
-
Probing the structure of RNAs in solution
-
Ehresmann C., Baudin F., Mougel M., Romby P., Ebel J. P., Ehresmann B. Probing the structure of RNAs in solution. Nucl. Acids Res. 15:1987;9109-9128.
-
(1987)
Nucl. Acids Res.
, vol.15
, pp. 9109-9128
-
-
Ehresmann, C.1
Baudin, F.2
Mougel, M.3
Romby, P.4
Ebel, J.P.5
Ehresmann, B.6
-
11
-
-
0023219950
-
RNA N-glycosidase activity of ricin A-chain. Mechanism of action of the toxic lectin ricin on eukaryotic ribosomes
-
Endo Y., Tsurugi K. RNA N-glycosidase activity of ricin A-chain. Mechanism of action of the toxic lectin ricin on eukaryotic ribosomes. J. Biol. Chem. 262:1987;8128-8130.
-
(1987)
J. Biol. Chem.
, vol.262
, pp. 8128-8130
-
-
Endo, Y.1
Tsurugi, K.2
-
12
-
-
0020479406
-
The site of action of alpha-sarcin on eukaryotic ribosomes. The sequence at the alpha-sarcin cleavage site in 28 S ribosomal ribonucleic acid
-
Endo Y., Wool I. G. The site of action of alpha-sarcin on eukaryotic ribosomes. The sequence at the alpha-sarcin cleavage site in 28 S ribosomal ribonucleic acid. J. Biol. Chem. 257:1982;9054-9060.
-
(1982)
J. Biol. Chem.
, vol.257
, pp. 9054-9060
-
-
Endo, Y.1
Wool, I.G.2
-
13
-
-
0023917453
-
The cytotoxins alpha-sarcin and ricin retain their specificity when tested on a synthetic oligoribonucleotide (35-mer) that mimics a region of 28 S ribosomal ribonucleic acid
-
Endo Y., Chan Y. L., Lin A., Tsurugi K., Wool I. G. The cytotoxins alpha-sarcin and ricin retain their specificity when tested on a synthetic oligoribonucleotide (35-mer) that mimics a region of 28 S ribosomal ribonucleic acid. J. Biol. Chem. 263:1988;7917-7920.
-
(1988)
J. Biol. Chem.
, vol.263
, pp. 7917-7920
-
-
Endo, Y.1
Chan, Y.L.2
Lin, A.3
Tsurugi, K.4
Wool, I.G.5
-
14
-
-
0030071775
-
Geometric parameters in nucleic acids: Sugar and phosphate constraints
-
Gelbin A., Schneider B., Clowney L., Hisieh S., Olson W. K., Berman H. M. Geometric parameters in nucleic acids: sugar and phosphate constraints. J. Am. Chem. Soc. 118:1996;519-529.
-
(1996)
J. Am. Chem. Soc.
, vol.118
, pp. 519-529
-
-
Gelbin, A.1
Schneider, B.2
Clowney, L.3
Hisieh, S.4
Olson, W.K.5
Berman, H.M.6
-
15
-
-
0343898815
-
Determination of the 28 S ribosomal RNA identity element (G4319) for alpha-sarcin and the relationship of recognition to the selection of the catalytic site
-
Gluck A., Wool I. G. Determination of the 28 S ribosomal RNA identity element (G4319) for alpha-sarcin and the relationship of recognition to the selection of the catalytic site. J. Mol. Biol. 256:1996;838-848.
-
(1996)
J. Mol. Biol.
, vol.256
, pp. 838-848
-
-
Gluck, A.1
Wool, I.G.2
-
16
-
-
0026704534
-
Ribosomal RNA identity elements for ricin A-chain recognition and catalysis. Analysis with tetraloop mutants
-
192
-
Gluck A., Endo Y., Wool I. G. Ribosomal RNA identity elements for ricin A-chain recognition and catalysis. Analysis with tetraloop mutants. J. Mol. Biol. 226:192;411-424.
-
J. Mol. Biol.
, vol.226
, pp. 411-424
-
-
Gluck, A.1
Endo, Y.2
Wool, I.G.3
-
17
-
-
0015500284
-
Requirement of an Escherichia coli 50 S ribosomal protein component for effective interaction of the ribosome with T and G factors and with guanosine triphosphate
-
Hamel E., Koka M., Nakamoto T. Requirement of an Escherichia coli 50 S ribosomal protein component for effective interaction of the ribosome with T and G factors and with guanosine triphosphate. J. Biol. Chem. 247:1972;805-814.
-
(1972)
J. Biol. Chem.
, vol.247
, pp. 805-814
-
-
Hamel, E.1
Koka, M.2
Nakamoto, T.3
-
18
-
-
0023405923
-
Evidence that the G2661 region of 23 S rRNA is located at the ribosomal binding sites of both elongation factors
-
Hausner T. P., Atmadja J., Nierhaus K. H. Evidence that the G2661 region of 23 S rRNA is located at the ribosomal binding sites of both elongation factors. Biochimie. 69:1987;911-923.
-
(1987)
Biochimie
, vol.69
, pp. 911-923
-
-
Hausner, T.P.1
Atmadja, J.2
Nierhaus, K.H.3
-
19
-
-
0016424613
-
Assembly of ribosomal proteins L7, L10, L11, and L12, on the 50 S subunit of Escherichia coli
-
Highland J. H., Howard G. A. Assembly of ribosomal proteins L7, L10, L11, and L12, on the 50 S subunit of Escherichia coli. J. Biol. Chem. 250:1975;813-814.
-
(1975)
J. Biol. Chem.
, vol.250
, pp. 813-814
-
-
Highland, J.H.1
Howard, G.A.2
-
20
-
-
0026000848
-
Crystal structure of an RNA double helix incorporating a track of non-Watson-Crick base pairs
-
Holbrook S. R., Cheong C., Tinoco I. Jr, Kim S. H. Crystal structure of an RNA double helix incorporating a track of non-Watson-Crick base pairs. Nature. 353:1991;579-581.
-
(1991)
Nature
, vol.353
, pp. 579-581
-
-
Holbrook, S.R.1
Cheong, C.2
Tinoco I., Jr.3
Kim, S.H.4
-
21
-
-
0032543957
-
A 1.3-Å resolution crystal structure of the HIV-1 trans-activation response region RNA stem reveals a metal ion-dependent bulge conformation
-
Ippolito J. A., Steitz T. A. A 1.3-Å resolution crystal structure of the HIV-1 trans-activation response region RNA stem reveals a metal ion-dependent bulge conformation. Proc. Natl Acad. Sci. USA. 95:1998;9819-9824.
-
(1998)
Proc. Natl Acad. Sci. USA
, vol.95
, pp. 9819-9824
-
-
Ippolito, J.A.1
Steitz, T.A.2
-
22
-
-
84889120137
-
Improved methods for binding protein models in electron density maps and the location of errors in these models
-
Jones T. A., Zou J. Y., Cowan S. W., Kjeldgaard T. Improved methods for binding protein models in electron density maps and the location of errors in these models. Acta Crystallog. sect. A. 47:1991;110-119.
-
(1991)
Acta Crystallog. Sect. a
, vol.47
, pp. 110-119
-
-
Jones, T.A.1
Zou, J.Y.2
Cowan, S.W.3
Kjeldgaard, T.4
-
23
-
-
0032582795
-
A common motif organizes the structure of multi-helix loops in 16 S and 23 S ribosomal RNAs
-
Leontis N. B., Westhof E. A common motif organizes the structure of multi-helix loops in 16 S and 23 S ribosomal RNAs. J. Mol. Biol. 283:1998;571-583.
-
(1998)
J. Mol. Biol.
, vol.283
, pp. 571-583
-
-
Leontis, N.B.1
Westhof, E.2
-
24
-
-
0033555251
-
Characterization of in vitro and in vivo mutations in non-conserved nucleotides in the ribosomal RNA recognition domain for the ribotoxins ricin and sarcin and the translation elongation factors
-
Macbeth M. R., Wool I. G. Characterization of in vitro and in vivo mutations in non-conserved nucleotides in the ribosomal RNA recognition domain for the ribotoxins ricin and sarcin and the translation elongation factors. J. Mol. Biol. 285:1999a;567-580.
-
(1999)
J. Mol. Biol.
, vol.285
, pp. 567-580
-
-
MacBeth, M.R.1
Wool, I.G.2
-
25
-
-
0033593240
-
The phenotype of mutations of G2655 in the sarcin/ricin domain of 23 S ribosomal RNA
-
Macbeth M. R., Wool I. G. The phenotype of mutations of G2655 in the sarcin/ricin domain of 23 S ribosomal RNA. J. Mol. Biol. 285:1999b;965-975.
-
(1999)
J. Mol. Biol.
, vol.285
, pp. 965-975
-
-
MacBeth, M.R.1
Wool, I.G.2
-
26
-
-
0029561680
-
The action of pokeweed antiviral protein and ricin A-chain on mutants in the alpha-sarcin loop of Escherichia coli 23 S ribosomal RNA
-
Marchant A., Hartley M. R. The action of pokeweed antiviral protein and ricin A-chain on mutants in the alpha-sarcin loop of Escherichia coli 23 S ribosomal RNA. J. Mol. Biol. 254:1995;848-855.
-
(1995)
J. Mol. Biol.
, vol.254
, pp. 848-855
-
-
Marchant, A.1
Hartley, M.R.2
-
27
-
-
0028930471
-
Interaction of the RNA binding fingers of Xenopus transcription factor IIIA with specific regions of 5 S ribosomal RNA
-
McBryant S. J., Veldhoen N., Gedulin B., Leresche A., Foster M. P., Wright P. E., Romaniuk P. J., Gottesfeld J. M. Interaction of the RNA binding fingers of Xenopus transcription factor IIIA with specific regions of 5 S ribosomal RNA. J. Mol. Biol. 248:1995;44-57.
-
(1995)
J. Mol. Biol.
, vol.248
, pp. 44-57
-
-
McBryant, S.J.1
Veldhoen, N.2
Gedulin, B.3
Leresche, A.4
Foster, M.P.5
Wright, P.E.6
Romaniuk, P.J.7
Gottesfeld, J.M.8
-
28
-
-
0023722010
-
Interaction of elongation factors EF-G and EF-Tu with a conserved loop in 23 S RNA
-
Moazed D., Robertson J. M., Noller H. F. Interaction of elongation factors EF-G and EF-Tu with a conserved loop in 23 S RNA. Nature. 334:1988;362-364.
-
(1988)
Nature
, vol.334
, pp. 362-364
-
-
Moazed, D.1
Robertson, J.M.2
Noller, H.F.3
-
29
-
-
0030774277
-
The ribosome-in-pieces: Binding of elongation factor EF-G to oligoribonucleotides that mimic the sarcin/ricin and thiostrepton domains of 23 S ribosomal RNA
-
Munishkin A., Wool I. G. The ribosome-in-pieces: binding of elongation factor EF-G to oligoribonucleotides that mimic the sarcin/ricin and thiostrepton domains of 23 S ribosomal RNA. Proc. Natl Acad. Sci. USA. 94:1997;12280-12284.
-
(1997)
Proc. Natl Acad. Sci. USA
, vol.94
, pp. 12280-12284
-
-
Munishkin, A.1
Wool, I.G.2
-
30
-
-
0029898625
-
The influence of base identity and base pairing on the function of the alpha-sarcin loop of 23 S rRNA
-
O'Connor M., Dahlberg A. E. The influence of base identity and base pairing on the function of the alpha-sarcin loop of 23 S rRNA. Nucl. Acids Res. 24:1996;2701-2705.
-
(1996)
Nucl. Acids Res.
, vol.24
, pp. 2701-2705
-
-
O'Connor, M.1
Dahlberg, A.E.2
-
31
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
Otwinowski Z., Minor W. Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol. 276:1997;307-326.
-
(1997)
Methods Enzymol.
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
32
-
-
0028037302
-
Model for an RNA tertiary interaction from the structure of an intermolecular complex between a GAAA tetraloop and an RNA helix
-
Pley H. W., Flaherty K. M., McKay D. B. Model for an RNA tertiary interaction from the structure of an intermolecular complex between a GAAA tetraloop and an RNA helix. Nature. 372:1994a;111-113.
-
(1994)
Nature
, vol.372
, pp. 111-113
-
-
Pley, H.W.1
Flaherty, K.M.2
McKay, D.B.3
-
33
-
-
0028063567
-
Three-dimensional structure of a hammerhead ribozyme
-
Pley H. W., Flaherty K. M., McKay D. B. Three-dimensional structure of a hammerhead ribozyme. Nature. 372:1994b;68-74.
-
(1994)
Nature
, vol.372
, pp. 68-74
-
-
Pley, H.W.1
Flaherty, K.M.2
McKay, D.B.3
-
34
-
-
0029051383
-
The crystal structure of r(CCCCGGGG) in two distinct lattices
-
Portmann S., Usman N., Egli M. The crystal structure of r(CCCCGGGG) in two distinct lattices. Biochemistry. 34:1995;7569-7575.
-
(1995)
Biochemistry
, vol.34
, pp. 7569-7575
-
-
Portmann, S.1
Usman, N.2
Egli, M.3
-
35
-
-
0027403007
-
Evidence for functional interaction between elongation factor Tu and 16 S ribosomal RNA
-
Powers T., Noller H. F. Evidence for functional interaction between elongation factor Tu and 16 S ribosomal RNA. Proc. Natl Acad. Sci. USA. 90:1993;1364-1368.
-
(1993)
Proc. Natl Acad. Sci. USA
, vol.90
, pp. 1364-1368
-
-
Powers, T.1
Noller, H.F.2
-
36
-
-
0032959711
-
Comparison of the crystal and solution structures of two RNA oligonucleotides
-
Rife J. P., Stallings S. C., Correll C. C., Dallas A., Steitz T. A., Moore P. B. Comparison of the crystal and solution structures of two RNA oligonucleotides. Biophys. J. 76:1999;65-75.
-
(1999)
Biophys. J.
, vol.76
, pp. 65-75
-
-
Rife, J.P.1
Stallings, S.C.2
Correll, C.C.3
Dallas, A.4
Steitz, T.A.5
Moore, P.B.6
-
37
-
-
0025744320
-
Structural basis of anticodon loop recognition by glutaminyl-tRNA synthetase
-
Rould M. A., Perona J. J., Steitz T. A. Structural basis of anticodon loop recognition by glutaminyl-tRNA synthetase. Nature. 352:1991;213-218.
-
(1991)
Nature
, vol.352
, pp. 213-218
-
-
Rould, M.A.1
Perona, J.J.2
Steitz, T.A.3
-
38
-
-
0031587290
-
An A to U transversion at position 1067 of 23 S rRNA from Escherichia coli impairs EF-Tu and EF-G function
-
Sarma U., Remme J., Ehrenberg M., Bilgin N. An A to U transversion at position 1067 of 23 S rRNA from Escherichia coli impairs EF-Tu and EF-G function. J. Mol. Biol. 272:1997;327-335.
-
(1997)
J. Mol. Biol.
, vol.272
, pp. 327-335
-
-
Sarma, U.1
Remme, J.2
Ehrenberg, M.3
Bilgin, N.4
-
39
-
-
0003458038
-
Principles of nucleic acid structure
-
C. R. Cantor. New York: Springer-Verlag New York, Inc.
-
Saenger W. Principles of nucleic acid structure. Cantor C. R. Springer Advanced Texts in Chemistry. 1984;Springer-Verlag New York, Inc. New York.
-
(1984)
Springer Advanced Texts in Chemistry
-
-
Saenger, W.1
-
40
-
-
0017334489
-
Specific cleavage of ribosomal RNA caused by alpha sarcin
-
Schindler D. G., Davies J. E. Specific cleavage of ribosomal RNA caused by alpha sarcin. Nucl. Acids Res. 4:1977;1097-1110.
-
(1977)
Nucl. Acids Res.
, vol.4
, pp. 1097-1110
-
-
Schindler, D.G.1
Davies, J.E.2
-
41
-
-
0015879508
-
Involvement of 50 S ribosomal proteins L6 and L10 in the ribosome dependent GTPase activity of elongation factor G
-
Schrier P. I., Maassen J. A., Moller W. Involvement of 50 S ribosomal proteins L6 and L10 in the ribosome dependent GTPase activity of elongation factor G. Biochem. Biophys. Res. Commun. 53:1973;90-98.
-
(1973)
Biochem. Biophys. Res. Commun.
, vol.53
, pp. 90-98
-
-
Schrier, P.I.1
Maassen, J.A.2
Moller, W.3
-
42
-
-
0029073091
-
The crystal structure of an all-RNA hammerhead ribozyme: A proposed mechanism for RNA catalytic cleavage
-
Scott W. G., Finch J. T., Klug A. The crystal structure of an all-RNA hammerhead ribozyme: a proposed mechanism for RNA catalytic cleavage. Cell. 81:1995;991-1002.
-
(1995)
Cell
, vol.81
, pp. 991-1002
-
-
Scott, W.G.1
Finch, J.T.2
Klug, A.3
-
43
-
-
0031668475
-
Structure and stability of variants of the sarcin-ricin loop of 28 S rRNA: NMR studies of the prokaryotic SRL and a functional mutant
-
Seggerson K., Moore P. B. Structure and stability of variants of the sarcin-ricin loop of 28 S rRNA: NMR studies of the prokaryotic SRL and a functional mutant. RNA. 4:1998;1203-1215.
-
(1998)
RNA
, vol.4
, pp. 1203-1215
-
-
Seggerson, K.1
Moore, P.B.2
-
45
-
-
0000743421
-
RNA recognition by proteins
-
R. F. Gesteland, T. R. Cech, & J. F. Atkins. Cold Spring Harbor: Cold Spring Harbor Laboratory Press
-
Steitz T. A. RNA recognition by proteins. Gesteland R. F., Cech T. R., Atkins J. F. The RNA World. 1999;427-450 Cold Spring Harbor Laboratory Press, Cold Spring Harbor.
-
(1999)
The RNA World
, pp. 427-450
-
-
Steitz, T.A.1
-
46
-
-
0028953727
-
The sarcin/ricin loop, a modular RNA
-
Szewczak A. A., Moore P. B. The sarcin/ricin loop, a modular RNA. J. Mol. Biol. 247:1995;81-98.
-
(1995)
J. Mol. Biol.
, vol.247
, pp. 81-98
-
-
Szewczak, A.A.1
Moore, P.B.2
-
48
-
-
0025370161
-
A single base mutation at position 2661 in E. coli 23 S ribosomal RNA affects the binding of ternary complex to the ribosome
-
Tapprich W. E., Dahlberg A. E. A single base mutation at position 2661 in E. coli 23 S ribosomal RNA affects the binding of ternary complex to the ribosome. EMBO J. 9:1990;2649-2655.
-
(1990)
EMBO J.
, vol.9
, pp. 2649-2655
-
-
Tapprich, W.E.1
Dahlberg, A.E.2
-
49
-
-
0033534470
-
Interaction of the sarcin/ricin domain of 23 S ribosomal RNA with proteins L3 and L6
-
Uchiumi T., Sato N., Wada A., Hachimori A. Interaction of the sarcin/ricin domain of 23 S ribosomal RNA with proteins L3 and L6. J. Biol. Chem. 274:1999;681-686.
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 681-686
-
-
Uchiumi, T.1
Sato, N.2
Wada, A.3
Hachimori, A.4
|