Haloterrigena jeotgali sp. nov., an extremely halophilic archaeon from salt-fermented food

International Journal of Systematic and Evolutionary Microbiology

Volumn 59, Issue 9, 2009, Pages 2359-2363

  Roh, Seong Woon ^a,b   Nam, Young Do ^a,b   Chang, Ho Won ^b   Kim, Kyoung Ho ^a   Sung, Youlboong ^b   Kim, Min Soo ^a,b   Oh, Hee Mock ^b   Bae, Jin Woo ^a,b  

^a Kyung Hee University   (South Korea)

^b Korea Research Institute of Bioscience and Biotechnology (KRIBB)   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; MANNOSE; MANNOSE 2,6 DISULFATE[1-2]GLUCOSE GLYCEROL DIETHER; PHOSPHATIDYLGLYCEROL; PHOSPHATIDYLGLYCEROL PHOSPHATE METHYL ESTER; RNA 16S; UNCLASSIFIED DRUG; ARCHAEAL DNA; ARCHAEAL RNA; ENZYME; PHOSPHOLIPID; PIGMENT; RIBOSOME DNA; SODIUM CHLORIDE;

ARTICLE; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM ISOLATE; CHEMOTAXONOMY; CONTROLLED STUDY; DNA CONTENT; DNA DNA HYBRIDIZATION; FERMENTED PRODUCT; GENETIC SIMILARITY; GRAM NEGATIVE BACTERIUM; HALOPHILIC ARCHAEON; HALOTERRIGENA JEOTGALI; KOREA; LIPID ANALYSIS; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PH; PHYLOGENY; PRIORITY JOURNAL; RNA SEQUENCE; SALINITY; SHRIMP; TEMPERATURE SENSITIVITY; BIOSYNTHESIS; CARBOHYDRATE METABOLISM; CHEMISTRY; CLASSIFICATION; CLUSTER ANALYSIS; DNA BASE COMPOSITION; DNA SEQUENCE; FOOD CONTROL; GENETICS; HALOBACTERIUM; ISOLATION AND PURIFICATION; METABOLISM; MOLECULAR GENETICS; NUCLEIC ACID HYBRIDIZATION; PHYSIOLOGY; RNA GENE; SEQUENCE HOMOLOGY;

ARCHAEA; DECAPODA (CRUSTACEA); HALOTERRIGENA; HALOTERRIGENA THERMOTOLERANS; NEGIBACTERIA;

BASE COMPOSITION; CARBOHYDRATE METABOLISM; CLUSTER ANALYSIS; DNA, ARCHAEAL; DNA, RIBOSOMAL; ENZYMES; FOOD MICROBIOLOGY; GENES, RRNA; HALOBACTERIACEAE; KOREA; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PHOSPHOLIPIDS; PHYLOGENY; PIGMENTS, BIOLOGICAL; RNA, ARCHAEAL; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, NUCLEIC ACID; SODIUM CHLORIDE;

EID: 70350510078     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.008243-0     Document Type: Article

References (38)

1. Aslam, Z., Lee, C. S., Kim, K. H., Im, W. T., Ten, L. N. & Lee, S. T. (2007a). Methylobacterium jeotgali sp. nov., a non-pigmented, facultatively methylotrophic bacterium isolated from jeotgal, a traditional Korean fermented seafood. Int J Syst Evol Microbiol 57, 566-571.
2. Aslam, Z., Lim, J. H., Im, W. T., Yasir, M., Chung, Y. R. & Lee, S. T. (2007b). Salinicoccus jeotgali sp. nov., isolated from jeotgal, a traditional Korean fermented seafood. Int J Syst Evol Microbiol 57, 633-638.
3. Baker, G. C., Smith, J. J. & Cowan, D. A. (2003). Review and reanalysis of domain-specific 16S primers. J Microbiol Methods 55, 541-555.
4. Cui, H. L., Tohty, D., Zhou, P. J. & Liu, S. J. (2006). Haloterrigena longa sp. nov. and Haloterrigena limicola sp. nov., extremely halophilic archaea isolated from a salt lake. Int J Syst Evol Microbiol 56, 1837-1840.
5. Dussault, H. P. (1955). An improved technique for staining red halophilic bacteria. J Bacteriol 70, 484-485.
6. Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
7. Gerhardt, P., Murray, R. G. E., Wood, W. A. & Krieg, N. R. (editors) (1994). Methods for General and Molecular Bacteriology. Washington, DC: American Society for Microbiology.
8. González, J. M. & Saiz-Jimenez, C. (2002). A fluorimetric method for the estimation of G+C mol% content in microorganisms by thermal denaturation temperature. Environ Microbiol 4, 770-773.
9. González, C., Gutiérrez, C. & Ramirez, C. (1978). Halobacterium vallismortis sp. nov. An amylolytic and carbohydrate-metabolizing, extremely halophilic bacterium. Can J Microbiol 24, 710-715.
10. Grant, W. D. (2004). Life at low water activity. Philos Trans R Soc Lond B Biol Sci 359, 1249-1267.
11. Gutiérrez, C. & González, C. (1972). Method for simultaneous detection of proteinase and esterase activities in extremely halophilic bacteria. Appl Microbiol 24, 516-517.
12. Gutiérrez, M. C., Castillo, A. M., Kamekura, M. & Ventosa, A. (2008). Haloterrigena salina sp. nov., an extremely halophilic archaeon isolated from a salt lake. Int J Syst Evol Microbiol 58, 2880-2884.
13. Kluge, A. G. & Farris, J. S. (1969). Quantitative phyletics and the evolution of anurans. Syst Zool 18, 1-32.
14. McGenity, T. J., Gemmell, R. T. & Grant, W. D. (1998). Proposal of a new halobacterial genus Natrinema gen. nov., with two species Natrinema pellirubrum nom. nov. and Natrinema pallidum nom. nov. Int J Syst Bacteriol 48, 1187-1196.
15. Montalvo-Rodríguez, R., López-Garriga, J., Vreeland, R. H., Oren, A., Ventosa, A. & Kamekura, M. (2000). Haloterrigena thermotolerans sp. nov., a halophilic archaeon from Puerto Rico. Int J Syst Evol Microbiol 50, 1065-1071.
16. Oren, A. & Ventosa, A. (2002). International Committee on Systematics of Prokaryotes. Subcommittee on the taxonomy of Halobacteriaceae. Int J Syst Evol Microbiol 52, 289-290.
17. Oren, A., Ventosa, A. & Grant, W. D. (1997). Proposed minimal standards for description of new taxa in the order Halobacteriales. Int J Syst Bacteriol 47, 233-238.
18. Purdy, K. J., Cresswell-Maynard, T. D., Nedwell, D. B., McGenity, T. J., Grant, W. D., Timmis, K. N. & Embley, T. M. (2004). Isolation of haloarchaea that grow at low salinities. Environ Microbiol 6, 591-595.
19. Roh, S. W., Nam, Y.-D., Chang, H.-W., Kim, K.-H., Lee, H.-J., Oh, H.-M. & Bae, J.-W. (2007a). Natronococcus jeotgali sp. nov., a halophilic archaeon isolated from shrimp jeotgal, a traditional fermented seafood from Korea. Int J Syst Evol Microbiol 57, 2129-2131.
20. Roh, S. W., Nam, Y. D., Chang, H. W., Sung, Y., Kim, K. H., Oh, H. M. & Bae, J. W. (2007b). Halalkalicoccus jeotgali sp. nov., a halophilic archaeon from shrimp jeotgal, a traditional Korean fermented seafood. Int J Syst Evol Microbiol 57, 2296-2298.
21. Roh, S. W., Sung, Y., Nam, Y. D., Chang, H. W., Kim, K. H., Yoon, J. H., Jeon, C. O., Oh, H. M. & Bae, J. W. (2008). Arthrobacter soli sp. nov., a novel bacterium isolated from wastewater reservoir sediment. J Microbiol 46, 40-44.
22. Romano, I., Poli, A., Finore, I., Huertas, F. J., Gambacorta, A., Pelliccione, S., Nicolaus, G., Lama, L. & Nicolaus, B. (2007). Haloterrigena hispanica sp. nov., an extremely halophilic archaeon from Fuente de Piedra, southern Spain. Int J Syst EvolMicrobiol 57, 1499-1503.
23. Rzhetsky, A. & Nei, M. (1992). A simple method for estimating and testing minimum-evolution trees. Mol Biol Evol 9, 945-967.
24. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
25. Sambrook, J., Fritsch, E. F. & Maniatis, T. (1989). Molecular Cloning: a Laboratory Manual, 2nd edn. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory.
26. Sehgal, S. N. & Gibbons, N. E. (1960). Effect of some metal ions on the growth of Halobacterium cutirubrum. Can J Microbiol 6, 165-169.
27. Tamura, K., Dudley, J., Nei, M. & Kumar, S. (2007). MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 24, 1596-1599.
28. Tapingkae, W., Tanasupawat, S., Itoh, T., Parkin, K. L., Benjakul, S., Visessanguan, W. & Valyasevi, R. (2008). Natrinema gari sp. nov., a halophilic archaeon isolated from fish sauce in Thailand. Int J Syst Evol Microbiol 58, 2378-2383.
29. Tindall, B. J. (1990). Lipid composition of Halobacterium lacusprofundi. FEMS Microbiol Lett 66, 199-202.
30. Ventosa, A., Gutiérrez, M. C., Kamekura, M. & Dyall-Smith, M. L. (1999). Proposal to transfer Halococcus turkmenicus, Halobacterium trapanicum JCM 9743 and strain GSL-11 to Haloterrigena turkmenica gen. nov., comb. nov. Int J Syst Bacteriol 49, 131-136.
31. Wayne, L.G., Brenner, D. J.,Colwell,R.R., Grimont,P. A. D.,Kandler,O., Krichevsky, M. I.,Moore, L.H., Moore,W. E.C.,Murray, R.G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
32. Xin, H., Itoh, T., Zhou, P., Suzuki, K., Kamekura, M. & Nakase, T. (2000). Natrinema versiforme sp. nov., an extremely halophilic archaeon from Aibi salt lake, Xinjiang, China. Int J Syst Evol Microbiol 50, 1297-1303.
33. Xu, X. W., Liu, S. J., Tohty, D., Oren, A., Wu, M. & Zhou, P. J. (2005a). Haloterrigena saccharevitans sp. nov., an extremely halophilic archaeon from Xin-Jiang, China. Int J Syst Evol Microbiol 55, 2539-2542.
34. Xu, X. W., Ren, P. G., Liu, S. J., Wu, M. & Zhou, P. J. (2005b). Natrinema altunense sp. nov., an extremely halophilic archaeon isolated from a salt lake in Altun Mountain in Xinjiang, China. Int J Syst Evol Microbiol 55, 1311-1314.
35. Yoon, J. H., Kang, S. S., Lee, K. C., Kho, Y. H., Choi, S. H., Kang, K. H. & Park, Y. H. (2001). Bacillus jeotgali sp. nov., isolated from jeotgal, Korean traditional fermented seafood. Int J Syst Evol Microbiol 51, 1087-1092.
36. Yoon, J. H., Kang, K. H. & Park, Y. H. (2003a). Psychrobacter jeotgali sp. nov., isolated from jeotgal, a traditional Korean fermented seafood. Int J Syst Evol Microbiol 53, 449-454.
37. Yoon, J. H., Lee, K. C., Weiss, N., Kang, K. H. & Park, Y. H. (2003b). Jeotgalicoccus halotolerans gen. nov., sp. nov. and Jeotgalicoccus psychrophilus sp. nov., isolated from the traditional Korean fermented seafood jeotgal. Int J Syst Evol Microbiol 53, 595-602.
38. Yoon, J. H., Jung, S. Y., Kim, W., Nam, S. W. & Oh, T. K. (2006). Nesterenkonia jeotgali sp. nov., isolated from jeotgal, a traditional Korean fermented seafood. Int J Syst Evol Microbiol 56, 2587-2592.