Halalkalicoccus jeotgali sp. nov., a halophilic archaeon from shrimp jeotgal, a traditional Korean fermented seafood

International Journal of Systematic and Evolutionary Microbiology

Volumn 57, Issue 10, 2007, Pages 2296-2298

  Roh, Seong Woon ^a,b   Nam, Young Do ^a,b   Chang, Ho Won ^b   Sung, Youlboong ^b   Kim, Kyoung Ho ^b   Oh, Hee Mock ^b   Bae, Jin Woo ^a,b,c  

^a University of Science and Technology (UST)   (South Korea)

^b Korea Research Institute of Bioscience and Biotechnology (KRIBB)   (South Korea)

^c Gyeongsang National University   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; CYTOSINE; GUANINE; RNA 16S; SODIUM CHLORIDE;

ARCHAEBACTERIUM; ARTICLE; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM ISOLATE; BIOCHEMISTRY; DNA DNA HYBRIDIZATION; FERMENTED PRODUCT; GENOTYPE PHENOTYPE CORRELATION; HALALKALICOCCUS; HALALKALICOCCUS JEOTGALI; HALALKALICOCCUS TIBETENSIS; HALOPHILIC ARCHAEON; KOREA; NEW GENUS; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PH; PHYLOGENY; PRIORITY JOURNAL; RNA SEQUENCE; SHRIMP;

ANIMALS; BASE COMPOSITION; DNA, ARCHAEAL; DNA, RIBOSOMAL; GENES, RRNA; HALOBACTERIACEAE; HYDROGEN-ION CONCENTRATION; KOREA; LOCOMOTION; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PANDALIDAE; PHYLOGENY; RNA, ARCHAEAL; RNA, RIBOSOMAL, 16S; SEAFOOD; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, NUCLEIC ACID; SODIUM CHLORIDE; TEMPERATURE;

ARCHAEA; DECAPODA (CRUSTACEA); HALALKALICOCCUS; HALALKALICOCCUS TIBETENSIS;

EID: 35648979998     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.65121-0     Document Type: Article

References (13)

1. Baker, G. C., Smith, J. J. & Cowan, D. A. (2003). Review and re-analysis of domain-specific 16S primers. J Microbiol Methods 55, 541-555.
2. Ezaki, T., Hashimoto, H. & Yabuuchi, E (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
3. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
4. Mesbah, M. & Whitman, W. B. (1989). Measurement of deoxyguanosine/thymidine ratios in complex mixtures by high-performance liquid chromatography for determination of the mole percentage guanine + cytosine of DNA. J Chromatogr 479, 297-306.
5. Oren, A., Ventosa, A. & Grant W. D. (1997). Proposed minimal standards for description of new taxa in the order Halobacteriales. Int J Syst Bacteriol 47, 233-238.
6. Purdy, K J., Cresswell-Maynard, T. D., Nedwell, D. B., McGenity, T. J., Grant W. D., Timmis, K. N. & Embley, T. M. (2004). Isolation of haloarchaea that grow at low salinities. Environ Microbiol 6, 591-595.
7. Saitou, N. & Nei, M. (1987). The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
8. Sambrook J., Fritsch, E. F. & Maniatis, T. (1989). Molecular Cloning: A Laboratory Manual, 2nd edn. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory.
9. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
10. Xin, H., ltoh, T., Zhou, P., Suzuki, K, Kamekura, M. & Nakase, T. (2000). Natrinema versiforme sp. nov., an extremely halophilic archaeon from Aibi salt lake, Xinjiang, China. Int J Syst Evol Microbiol 50, 1297-1303.
11. Xue, Y., Fan, H., Ventosa, A., Grant, W. D., Jones, B. E, Cowan, D. A. & Ma, Y. (2005). Halalkalicoccus tibetensis gen. nov., sp. nov., representing a novel genus of haloalkaliphilic archaea. Int J Syst Evol Microbiol 55, 2501-2505.
12. Yoon, J. H., Kang, S. S., Lee, K. C., Kho, Y. H., Choi, S. H., Kang, K. H. & Park, Y. H. (2001). Bacillus jeotgali sp. nov., isolated from jeotgal, Korean traditional fermented seafood. Int J Syst Evol Microbiol 51, 1087-1092.
13. Yoon, J. H., Kang, K. H. & Park Y. H. (2003). Halobacillus salinus sp. nov., isolated from a salt lake on the coast of the East Sea in Korea. Int J Syst Evol Microbiol 53, 687-693.