Natrinema versiforme sp. nov., an extremely halophilic archaeon from Aibi salt lake, Xinjiang, China

International Journal of Systematic and Evolutionary Microbiology

Volumn 50, Issue 3, 2000, Pages 1297-1303

  Xin, Huawei ^a,b   Itoh, Takashi ^b   Zhou, Peijin ^a   Suzuki, Ken Ichiro ^b   Kamekura, Masahiro ^c   Nakase, Takashi ^b  

^a INSTITUTE OF MICROBIOLOGY   (China)

^b RIKEN BIORESOURCE CENTER   (Japan)

^c Noda Institute for Scientific Research   (Japan)

Author keywords

Archaea; Halobacteria; Natrinema versiforme sp. nov.

Indexed keywords

GLYCOLIPID; MAGNESIUM CHLORIDE; MEMBRANE LIPID; RIBOSOME DNA; RNA 16S; SODIUM CHLORIDE;

ARTICLE; BACTERIAL GROWTH; BACTERIUM ISOLATE; CONCENTRATION RESPONSE; CONTROLLED STUDY; DNA DNA HYBRIDIZATION; HALOBACTERIALES; NATRINEMA PALLIDUM; NATRINEMA PELLIRUBRUM; NATRINEMA VERSIFORME; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; SPECIES DIFFERENCE; STRAIN DIFFERENCE; TAXONOMY;

ARCHAEA; BACTERIA (MICROORGANISMS); HALOBACTERIA; HALOBACTERIALES; HALOTERRIGENA TURKMENICA; NATRINEMA; NATRINEMA PALLIDUM; NATRINEMA PELLIRUBRUM; NATRINEMA VERSIFORME; NEGIBACTERIA; PROKARYOTA;

EID: 0034112461     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/00207713-50-3-1297     Document Type: Article

References (29)

1. Cline, S. W., Schalkwyk, L. C. & Doolittle, W. D. (1989). Transformation of the archaebacterium Halobacterium volcanii with genomic DNA. J Bacteriol 171, 4987-4991.
2. Dittmer, J. C. & Lester, R. L. (1964). A simple, specific spray for the detection of phospholipids on thin-layer chromatograms. J Lipid Res 5, 126-127.
3. Dussault, H. P. (1955). An improved technique for staining red halophilic bacteria. J Bacteriol 70, 484-485.
4. Ezaki, T., Hashimoto, H. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
5. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
6. Grant, W. D. & Larsen, H. (1989). Extremely halophilic archaeobacteria, order Halobacteriales ord. nov. In Bergey's Manual of Systematic Bacteriology, vol. 3, pp. 2216-2233. Edited by J. T. Staley, M. P. Bryant, N. Pfennig & J. G. Holt. Baltimore: Williams & Wilkins.
7. Ihara, K., Watanabe, S. & Tamura, T. (1997). Haloarcula argentinensis sp. nov. and Haloarcula mukohataei sp. nov., two new extremely halophilic archaea collected in Argentina. Int J Syst Bacteriol 47, 73-77.
8. Kamekura, M. (1993). Lipids of extreme halophiles. In The Biology of Halophilic Bacteria, pp. 135-161. Edited by R. H. Vreeland & L. I. Hochstein. Boca Raton: CRC Press.
9. Kamekura, M. (1998). Diversity of extremely halophilic bacteria Extremophiles 2, 289-295.
10. Kamekura, M. & Dyall-Smith, M. L. (1995). Taxonomy of the family Halobacteriaceae and the description of two genera Halorubrobacterium and Natrialba. J Gen Appl Microbiol 41, 333-350.
11. Kamekura, M., Dyall-Smith, M. L., Upasani, V., Ventosa, A. & Kates, M. (1997). Diversity of alkaliphilic halobacteria: proposals for transfer of Natronobacterium vacuolatum, Natronobacterium magadii, and Natronobacterium pharaonis to Halorubrum, Natrialba, and Natronomonas gen. nov., respectively, as Halorubrum vacuolatum comb. nov., Natrialba magadii comb. nov., and Natronomonas pharaonis comb. nov., respectively. Int J Syst Bacteriol 47, 853-857.
12. McGenity, T. J. & Grant, W. D. (1995). Transfer of Halobacterium saccharovorum, Halobacterium sodomense, Halobacterium trapanicum NRC 34021 and Halobacterium lacusprofundi to the genus Halorubrum gen. nov. as Halorubrum saccharovorum comb. nov., Halorubrum sodomense comb. nov., Halorubrum trapanicum comb. nov., and Halarubrum lacusprofundi comb. nov. Syst Appl Microbiol 18, 237-243.
13. McGenity, T. J., Gemmell, R. T. & Grant, W. D. (1998). Proposal of a new halobacterial genus Natrinema gen. nov., with two species Natrinema pellirubrum nom. nov. and Natrinema pallidum nom. nov. Int J Syst Bacteriol 48, 1187-1196.
14. Montalvo-Rodríguez, R., Vreeland, R. H., Oren, A., Kessel, M., Betancourt, C. & López-Garriga, J. (1998). Halogeometricum borinquense gen. nov., sp. nov., a novel halophilic archaeon from Puerto Rico. Int J Syst Bacteriol 48, 1305-1312.
15. Oren, A., Ventosa, A. & Grant, W. D. (1997). Proposed minimal standards for description of new taxa in the order Halobacteriales. Int J Syst Bacteriol 47, 233-238.
16. Ross, H. N. M. & Grant, W. D. (1985). Nucleic acid studies on halophilic archaebacteria. J Gen Microbiol 131, 165-173.
17. Ross, H. N. M., Grant, W. D. & Harris, J. E. (1985). Lipids in archaebacterial taxonomy. In Chemical Methods in Bacterial Systematics, pp. 289-300. Edited by M. Goodfellow & D. E. Minnikin. London : Academic Press.
18. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
19. Sehgal, S. N. & Gibbons, N. E. (1960). Effect of metal ions on the growth of Halobacterium cutirubrum. Can J Microbiol 6, 165-169.
20. Smibert, R. M. & Krieg, N. R. (1981). General characterization. In Manual of Methods for General Bacteriology, pp. 409-443. Edited by P. Gerhardt, R. G. E. Murray, R. N. Costilow, E. W. Nester, W. A. Wood, N. R. Krieg & G. B. Phillips. Washington, DC: American Society for Microbiology.
21. Tamaoka, J. (1994). Determination of DNA base composition. In Chemical Methods in Prokaryotic Systematics, pp. 463-470. Edited by M. Goodfellow & A. G. O'Donnell. Chichester: Wiley.
22. Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). CLUSTAL w: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673-4680.
23. Tian, X., Xu, Y., Liu, H. & Zhou, P. (1997). New species of Natronobacterium. Acta Microbiol Sin 37, 1-6.
24. Ventosa, A., Gutiérez, M. C., Kamekura, M. & Dyall-Smith, M. L. (1999). Proposal to transfer Halococcus turkmenicus, Halobacterium trapanicum JCM 9743 and strain GSL-11 to Haloterrigena turkmenica gen. nov., comb. nov. Int J Syst Bacteriol 49, 131-136.
25. Wang, D., Zhou, P., Tian, X. & Ma, G. (1984). Identification of new species of extreme halophilic bacteria. Acta Microbiol Sin 24, 304-309.
26. Xu, Y., Liu, H. & Zhou, P. (1995). Nucleotide sequence of the 16S rRNA from an archaea, Haloarcula aidinensis strain B2. Acta Microbiol Sin 35, 77-85.
27. Xu, Y., Zhou, P. & Tian, X. (1999). Characterization of two novel haloalkaliphilic archaea, Natronorubrum bangense gen. nov., sp. nov. and Natronorubrum tibetense gen. nov., sp. nov. Int J Syst Bacteriol 49, 261-266.
28. Zhou, P., Tian, X., Ma, Y., Xiao, C. & Wang, D. (1990). An extreme haloalkaligenous bacterium. Acta Microbiol Sin 30, 1-6.
29. Zhou, P., Xu, Y., Xiao, C., Ma, Y. & Liu, H. (1994). New species of Haloarcula. Acta Microbiol Sin 34, 89-95.