Jeotgalicoccus halotolerans gen. nov., sp. nov. and Jeotgalicoccus psychrophilus sp. nov., isolated from the traditional Korean fermented seafood jeotgal

International Journal of Systematic and Evolutionary Microbiology

Volumn 53, Issue 2, 2003, Pages 595-602

  Yoon, Jung Hoon ^a   Lee, Keun Chul ^a   Weiss, Norbert ^b   Kang, Kook Hee ^c   Park, Yong Ha ^a  

^a Korea Research Institute of Bioscience and Biotechnology (KRIBB)   (South Korea)

^b LEIBNIZ INSTITUTE DSMZ GERMAN COLLECTION OF MICROORGANISMS AND CELL CULTURES   (Germany)

^c Sungkyunkwan University   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

ALANINE; BACTERIAL DNA; CARDIOLIPIN; DNA 16S; GLYCINE; LYSINE; MENAQUINONE; PEPTIDOGLYCAN; PHOSPHATIDYLGLYCEROL; PHOSPHOLIPID; SATURATED FATTY ACID; UNSATURATED FATTY ACID;

ARTICLE; BACTERIAL GENOME; BACTERIAL STRAIN; BACTERIUM ISOLATION; CELL POLARITY; CONTROLLED STUDY; DNA CONTENT; DNA SEQUENCE; FERMENTATION; GENETIC SIMILARITY; GRAM POSITIVE COCCI; HALOPHILIC BACTERIUM; JEOTGALICOCCUS HALOTERANS; JEOTGALICOCCUS PSYCHROPHILUS; KOREA; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENY; PRIORITY JOURNAL; SALT TOLERANCE; SEA FOOD; SPOROGENESIS; STRAIN DIFFERENCE;

FATTY ACIDS; FERMENTATION; KOREA; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEAFOOD; SEQUENCE ANALYSIS, DNA; STAPHYLOCOCCACEAE;

BACTERIA (MICROORGANISMS); JEOTGALICOCCUS; JEOTGALICOCCUS HALOTOLERANS; JEOTGALICOCCUS PSYCHROPHILUS; POSIBACTERIA; PROKARYOTA; SALINICOCCUS;

EID: 0037357632     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.02132-0     Document Type: Article

References (28)

1. Collins, M. D., Williams, A. M. & Wallbanks, S. (1990). The phylogeny of Aerococcus and Pediococcus as determined by 16S rRNA sequence analysis: description of Tetragenococcus gen. nov. FEMS Microbiol Lett 70, 255-262.
2. Cowan, S. T. & Steel, K. J. (1965). Manual for the Identification of Medical Bacteria. London: Cambridge University Press.
3. Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
4. Felsenstein, J. (1981). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17, 368-376.
5. Felsenstein, J. (1993). PHYLIP (Phylogeny Inference Package) version 3.5. Seattle: University of Washington.
6. Jukes, T. H. & Cantor, C. R. (1969). Evolution of protein molecules. In Mammalian Protein Metabolism, vol. 3, pp. 21-132. Edited by H. N. Munro. New York: Academic Press.
7. Kloos, W. E., Ballard, D. N., George, C. G., Webster, J. A., Hubner, R. J., Ludwig, W., Schleifer, K. H., Fiedler, F. & Schubert, K. (1998). Delimiting the genus Staphylococcus through description of Macrococcus caseolyticus gen. nov., comb. nov. and Macrococcus equipercicus sp. nov., Macrococcus bovicus sp. nov. and Macrococcus carouselicus sp. nov. Int J Syst Bacteriol 48, 859-877.
8. Kloos, W. E. & Schleifer, K. H. (1986). Genus Staphylococcus Rosenbach 1884. In Bergey's Manual of Systematic Bacteriology, vol. 2, pp. 1013-1035. Edited by P. H. A. Sneath, N. S. Mair, M. E. Sharpe & J. G. Holt. Baltimore: Williams & Wilkins.
9. Kluge, A. G. & Farris, J. S. (1969). Quantitative phyletics and the evolution of anurans. Syst Zool 18, 1-32.
10. Komagata, K. & Suzuki, K. (1987). Lipids and cell-wall analysis in bacterial systematics. Methods Microbiol 19, 161-207.
11. Lanyi, B. (1987). Classical and rapid identification methods for medically important bacteria. Methods Microbiol 19, 1-67.
12. Leifson, E. (1963). Determination of carbohydrate metabolism of marine bacteria. J Bacteriol 85, 1183-1184.
13. Márquez, M. C., Ventosa, A. & Ruíz-Berraquero, F. (1990). Marinococcus hispanicus, a new species of moderately halophilic gram-positive cocci. Int J Syst Bacteriol 40, 165-169.
14. Minnikin, D. E., O'Donnell, A. G., Goodfellow, M., Alderson, G., Athalye, M., Schaal, A. & Parlett, J. H. (1984). An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2, 233-241.
15. Probst, A. J., Hertel, C., Richter, L., Wassill, L., Ludwig, W. & Hammes, W. P. (1998). Staphylococcus condimenti sp. nov., from soy sauce mash, and Staphylococcus carnosus (Schleifer and Fischer 1982) subsp. utilis subsp. nov. Int J Syst Bacteriol 48, 651-658.
16. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
17. Satomi, M., Kimura, B., Mizoi, M., Sato, T. & Fujii, T. (1997). Tetragenococcus muriaticus sp. nov., a new moderately halophilic lactic acid bacterium isolated from fermented squid liver sauce. Int J Syst Bacteriol 47, 832-836.
18. Schleifer, K. H. & Kandler, O. (1972). Peptidoglycan types of bacterial cell walls and their taxonomic implications. Bacteriol Rev 36, 407-477.
19. Stackebrandt, E., Koch, C., Gvozdiak, O. & Schumann, P. (1995). Taxonomic dissection of the genus Micrococcus: Kocuria gen. nov., Nesterenkonia gen. nov., Kytococcus gen. nov., Dermacoccus gen. nov., and Micrococcus Cohn 1872 gen. emend. Int J Syst Bacteriol 45, 682-692.
20. Stackebrandt, E., Rainey, F. A. & Ward-Rainey, N. L. (1997). Proposal for a new hierarchic classification system, Actinobacteria classis nov. Int J Syst Bacteriol 47, 479-491.
21. Tamaoka, J. & Komagata, K. (1984). Determination of DNA base composition by reversed phase high performance liquid chromatography. FEMS Microbiol Lett 25, 125-128.
22. Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673-4680.
23. Ventosa, A., Márquez, M. C., Ruíz-Berraquero, F. & Kocur, M. (1990). Salinicoccus roseus gen. nov., sp. nov., a new moderately halophilic gram-positive coccus. Syst Appl Microbiol 13, 29-33.
24. Ventosa, A., Márquez, M. C., Weiss, N. & Tindall, B. J. (1992). Transfer of Marinococcus hispanicus to the genus Salinicoccus as Salinicoccus hispanicus comb. nov. Syst Appl Microbiol 15, 530-534.
25. Ventosa, A., Nieto, J. J. & Oren, A. (1998). Biology of moderately halophilic aerobic bacteria. Microbiol Mol Biol Rev 62, 504-544.
26. Yoon, J.-H., Kim, H., Kim, S.-B., Kim, H.-J., Kim, W. Y., Lee, S. T., Goodfellow, M. & Park, Y.-H. (1996). Identification of Saccharomonospora strains by the use of genomic DNA fragments and rRNA gene probes. Int J Syst Bacteriol 46, 502-505.
27. Yoon, J.-H., Lee, S. T. & Park, Y.-H. (1998). Inter- and intraspecific phylogenetic analysis of the genus Nocardioides and related taxa based on 16S rDNA sequences. Int J Syst Bacteriol 48, 187-194.
28. Zhang, W., Xue, Y., Ma, Y., Zhou, P., Ventosa, A. & Grant, W. D. (2002). Salinicoccus alkaliphilus sp. nov., a novel alkaliphile and moderate halophile from Baer Soda Lake in Inner Mongolia Autonomous Region, China. Int J Syst Evol Microbiol 52, 789-793.