Haloterrigena salina sp. nov., an extremely halophilic archaeon isolated from a salt lake

International Journal of Systematic and Evolutionary Microbiology

Volumn 58, Issue 12, 2008, Pages 2880-2884

  Gutierrez M C ^a   Castillo, A M ^a   Kamekura, M ^b   Ventosa, A ^a  

^a UNIVERSITY OF SEVILLE   (Spain)

^b Halophiles Research Institute   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; BACTERIAL RNA; LIPID; MAGNESIUM; MANNOSE 2,6 DISULFATE (1-2) GLUCOSE GLYCEROLDIETHER; PHOSPHATIDYLGLYCEROL; PHOSPHATIDYLGLYCEROLPHOSPHATE METHYL ESTER; RIBOSOME RNA; RNA 16S; SODIUM CHLORIDE; UNCLASSIFIED DRUG; FATTY ACID; INORGANIC SALT;

ARTICLE; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATION; CHINA; CONTROLLED STUDY; DNA DNA HYBRIDIZATION; GENETIC SIMILARITY; HALOBACTERIALES; HALOBACTERIUM; HALOPHILIC ARCHAEON; HALOTERRIGENA HISPANICA; HALOTERRIGENA LIMICOLA; HALOTERRIGENA SACCHAREVITANS; HALOTERRIGENA SALINA; HALOTERRIGENA THERMOTOLERANS; HALOTERRIGENA TURKMENICA; MICROBIAL ACTIVITY; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; RNA SEQUENCE; SALT LAKE; SEQUENCE HOMOLOGY; SPECIES COMPARISON; STRAIN DIFFERENCE; TYPE STRAIN; CHEMISTRY; CLASSIFICATION; GENETICS; MICROBIOLOGY; MOLECULAR GENETICS; PHYLOGENY; PHYSIOLOGY; SPECIES DIFFERENCE;

ARCHAEA; HALOTERRIGENA; HALOTERRIGENA SACCHAREVITANS; HALOTERRIGENA THERMOTOLERANS; HALOTERRIGENA TURKMENICA; LIMICOLA;

FATTY ACIDS; HALOBACTERIACEAE; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, RIBOSOMAL, 16S; SALTS; SPECIES SPECIFICITY; WATER MICROBIOLOGY;

EID: 58949096259     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.2008/001602-0     Document Type: Article

References (44)

1. Arahal, D. R., Dewhirst, F. E., Paster, B. J., Volcani, B. E. & Ventosa, A. (1996). Phylogenetic analyses of some extremely halophilic archaea isolated from Dead Sea water, determined on the basis of their 16S rRNA sequences. Appl Environ Microbiol 62, 3779-3786.
2. Bardavid, R. E., Mana, L. & Oren, A. (2007). Haloplanus natans gen. nov., sp. nov., an extremely halophilic, gas-vacuolate archaeon isolated from Dead Sea-Red Sea water mixtures in experimental outdoor ponds. Int J Syst Evol Microbiol 57, 780-783.
3. Burns, D. G., Janssen, P. H., Itoh, T., Kamekura, M., Li, Z., Jensen, G., Rodríguez-Valera, F., Bolhuis, H. & Dyall-Smith, M. L. (2007). Haloquadratum walsbyi gen. nov., sp. nov., the square haloarchaeon of Walsby, isolated from saltern crystallizers in Australia and Spain. Int J Syst Evol Microbiol 57, 387-392.
4. Castillo, A. M., Gutiérrez, M. C., Kamekura, M., Ma, Y., Cowan, D. A., Jones, B. E., Grant, W. D. & Ventosa, A. (2006a). Halovivax asiaticus gen. nov., sp. nov., a novel extremely halophilic archaeon isolated from Inner Mongolia, China. Int J Syst Evol Microbiol 56, 765-770.
5. Castillo, A. M., Gutiérrez, M. C., Kamekura, M., Xue, Y., Ma, Y., Cowan, D. A., Jones, B. E., Grant, W. D. & Ventosa, A. (2006b). Halostagnicola larsenii gen. nov., sp. nov., an extremely halophilic archaeon from a saline lake in Inner Mongolia, China. Int J Syst Evol Microbiol 56, 1519-1524.
6. Chun, J., Lee, J.-H., Jung, Y., Kim, M., Kim, S., Kim, B. K. & Lim, Y. W. (2007). EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int J Syst Evol Microbiol 57, 2259-2261.
7. Cui, H.-L., Tohty, D., Zhou, P.-J. & Liu, S.-J. (2006). Haloterrigena longa sp. nov. and Haloterrigena limicola sp. nov., extremely halophilic archaea isolated from a salt lake. Int J Syst Evol Microbiol 56, 1837-1840.
8. De Ley, J. & Tijtgat, R. (1970). Evaluation of membrane filter methods for DNA-DNA hybridization. Antonie van Leeuwenhoek 36, 461-474.
9. AL emend. Larsen and Grant 1989, 2222. In Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 1, pp. 301-305. Edited by D. R. Boone, R. W. Castenholz & G. M. Garrity. New York: Springer.
10. AL. In Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 1, pp. 311-314. Edited by D. R. Boone, R. W. Castenholz & G. M. Garrity. New York: Springer.
11. VP (Effective publication: Grant and Larsen 1989a, 2216). In Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 1, pp. 294-299. Edited by D. R. Boone, R. W. Castenholz & G. M. Garrity. New York: Springer.
12. Gutiérrez, M. C., Castillo, A. M., Kamekura, M., Ma, Y., Cowan, D. A., Jones, B. E., Grant, W. D. & Ventosa, A. (2007). Halopiger xanaduensis gen. nov., sp. nov., an extremely halophilic archaeon isolated from saline Lake Shangmatala in Inner Mongolia, China. Int J Syst Evol Microbiol 57, 1402-1407.
13. Hezayen, F. F., Tindall, B. J., Steinbüchel, A. & Rehm, B. H. A. (2002). Characterization of a novel halophilic archaeon, Halobiforma haloterrestris gen. nov., sp. nov., and transfer of Natronobacterium nitratireducens to Halobiforma nitratireducens comb. nov. Int J Syst Evol Microbiol 52, 2271-2280.
14. Itoh, T., Yamaguchi, T., Zhou, P. & Takashina, T. (2005). Natronolimnobius baerhuensis gen. nov., sp. nov. and Natronolimnobius innermongolicus sp. nov., novel haloalkaliphilic archaea isolated from soda lakes in Inner Mongolia, China. Extremophiles 9, 111-116.
15. Johnson, J. L. (1994). Similarity analysis of DNAs. In Methods for General and Molecular Bacteriology, pp. 655-681. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
16. Kamekura, M. (1993). Lipids of extreme halophiles. In The Biology of Halophilic Bacteria, pp. 135-161. Edited by R. H. Vreeland & L. I. Hochstein. Boca Raton, FL: CRC Press.
17. Kamekura, M. & Dyall-Smith, M. L. (1995). Taxonomy of the family Halobacteriaceae and the description of two new genera Halorubrobacterium and Natrialba. J Gen Appl Microbiol 41, 333-350.
18. Kamekura, M., Dyall-Smith, M. L., Upasani, V., Ventosa, A. & Kates, M. (1997). Diversity of alkaliphilic halobacteria: proposals for transfer of Natronobacterium vacuolatum, Natronobacterium magadii, and Natronobacterium pharaonis to Halorubrum, Natrialba, and Natronomonas gen. nov., respectively, as Halorubrum vacuolatum comb. nov., Natrialba magadii comb. nov., and Natronomonas pharaonis comb. nov., respectively. Int J Syst Bacteriol 47, 853-857.
19. Lopez-Garcia, P., Moreira, D., Lopez-Lopez, A. & Rodríguez-Valera, F. (2001). A novel haloarchaeal-related lineage is widely distributed in deep oceanic regions. Environ Microbiol 3, 72-78.
20. Ludwig, W., Strunk, O., Westram, R., Richter, L., Meier, H., Yadhukumar, Buchner, A., Lai, T., Steppi, S. & other authors (2004). ARB: a software environment for sequence data. Nucleic Acids Res 32, 1363-1371.
21. Marmur, J. (1961). A procedure for the isolation of deoxyribonucleic acid from microorganisms. J Mol Biol 3, 208-218.
22. Marmur, J. & Doty, P. (1962). Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature. J Mol Biol 5, 109-118.
23. McGenity, T. J. & Grant, W. D. (1995). Transfer of Halobacterium saccharovorum, Halobacterium sodomense, Halobacterium trapanicum NRC 34021 and Halobacterium lacusprofundi to the genus Halorubrum gen. nov., as Halorubrum saccharovorum comb. nov., Halorubrum sodomense comb. nov., Halorubrum trapanicum comb. nov., and Halorubrum lacusprofundi comb. nov. Syst Appl Microbiol 18, 237-243.
24. McGenity, T. J., Gemmell, R. T. & Grant, W. D. (1998). Proposal of a new halobacterial genus Natrinema gen. nov., with two species Natrinema pellirubrum nom. nov. and Natrinema pallidum nom. nov. Int J Syst Bacteriol 48, 1187-1196.
25. Montalvo-Rodriguez, R., Vreeland, R. H., Oren, A., Kessel, M., Betancourt, C. & Lopez-Garriga, J. (1998). Halogeometricum borinquense gen. nov., sp. nov., a novel halophilic archaeon from Puerto Rico. Int J Syst Bacteriol 48, 1305-1312.
26. Montalvo-Rodriguez, R., Lopez-Garriga, J., Vreeland, R. H., Oren, A., Ventosa, A. & Kamekura, M. (2000). Haloterrigena thermotolerans sp. nov., a halophilic archaeon from Puerto Rico. Int J Syst Evol Microbiol 50, 1065-1071.
27. Oren, A., Gurevich, P., Gemmell, R. T. & Teske, A. (1995). Halobaculum gomorrense gen. nov., sp. nov., a novel extremely halophilic archaeon from the Dead Sea. Int J Syst Bacteriol 45, 747-754.
28. Oren, A., Ventosa, A. & Grant, W. D. (1997). Proposed minimal standards for description of new taxa in the order Halobacteriales. Int J Syst Bacteriol 47, 233-238.
29. Oren, A., Elevi, R., Watanabe, S., Ihara, K. & Corcelli, A. (2002). Halomicrobium mukohataei gen. nov., comb. nov., and emended description of Halomicrobium mukohataei. Int J Syst Evol Microbiol 52, 1831-1835.
30. Owen, R. J. & Hill, L. R. (1979). The estimation of base compositions, base pairing and genome sizes of bacterial deoxyribonucleic acids. In Identification Methods for Microbiologists (Society for Applied Bacteriology Technical Series no. 14), 2nd edn, pp. 277-296. Edited by F. A. Skinner & D. W. Lovelock. London: Academic Press.
31. Romano, I., Poli, A., Finore, I., Huertas, J., Gambacorta, A., Pelliccione, S., Nicolaus, G., Lama, L. & Nicolaus, B. (2007). Haloterrigena hispanica sp. nov., an extremely halophilic archaeon from Fuente de Piedra, southern Spain. Int J Syst Evol Microbiol 57, 1499-1503.
32. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
33. Savage, K. N., Krumholz, L. R., Oren, A. & Elshahed, M. S. (2007). Haladaptatus paucihalophilus gen. nov., sp. nov., a halophilic archaeon isolated from a low-salt, sulfide-rich spring. Int J Syst Evol Microbiol 57, 19-24.
34. Stackebrandt, E. & Goebel, B. M. (1994). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846-849.
35. Tindall, B. J., Ross, H. N. M. & Grant, W. D. (1984). Natronobacterium gen. nov. and Natronococcus gen. nov., two new genera of haloalkaliphilic archaebacteria. Syst Appl Microbiol 5, 41-57.
36. Torreblanca, M., Rodriguez-Valera, F., Juez, G., Ventosa, A., Kamekura, M. & Kates, M. (1986). Classification of non-alkaliphilic halobacteria based on numerical taxonomy and polar lipid composition and description of Haloarcula gen. nov. and Haloferax gen. nov. Syst Appl Microbiol 8, 89-99.
37. Ventosa, A., Gutiérrez, M. C., Kamekura, M. & Dyall-Smith, M. L. (1999). Proposal to transfer Halococcus turkmenicus, Halobacterium trapanicum JCM 9743 and strain GSL-11 to Haloterrigena turkmenica gen. nov., comb. nov. Int J Syst Bacteriol 49, 131-136.
38. Ventosa, A., Gutiérrez, M. C., Kamekura, M., Zvyagintseva, I. S. & Oren, A. (2004). Taxonomic study of Halorubrum distributum and proposal of Halorubrum terrestre sp. nov. Int J Syst Evol Microbiol 54, 389-392.
39. Vreeland, R. H., Straight, S., Krammes, J., Dougherty, K., Rosenzweig, W. D. & Kamekura, M. (2002). Halosimplex carlsbadense gen. nov., sp. nov., a unique halophilic archaeon, with three 16S rRNA genes, that grows only in defined medium with glycerol and acetate or pyruvate. Extremophiles 6, 445-452.
40. Wainø, M., Tindall, B. J. & Ingvorsen, K. (2000). Halorhabdus utahensis gen. nov., sp. nov., an aerobic, extremely halophilic member of the Archaea from Great Salt Lake, Utah. Int J Syst Evol Microbiol 50, 183-190.
41. Wilson, K. (1987). Preparation of genomic DNA from bacteria. In Current Protocols in Molecular Biology, pp. 2.4.1-2.4.5. Edited by F. M. Ausubel, R. Brent, R. E. Kingston, D. D. Moore, J. G. Seidman, J. A. Smith & K. Struhl. New York: Green Publishing & Wiley-Interscience.
42. Xu, Y., Zhou, P. & Tian, X. (1999). Characterization of two novel haloalkaliphilic archaea, Natronorubrum bangense gen. nov., sp. nov. and Natronorubrum tibetense gen. nov., sp. nov. Int J Syst Bacteriol 49, 261-266.
43. Xu, X. W., Liu, S. J., Tohty, D., Oren, A., Wu, M. & Zhou, P. J. (2005). Haloterrigena saccharevitans sp. nov., an extremely halophilic archaeon isolated from Xin-Jiang, China. Int J Syst Evol Microbiol 55, 2539-2542.
44. Xue, Y., Fan, H., Ventosa, A., Grant, W. D., Jones, B. E., Cowan, D. A. & Ma, Y. (2005). Halalkalicoccus tibetensis gen. nov., sp. nov., representing a novel genus of haloalkaliphilic archaea. Int J Syst Evol Microbiol 55, 2501-2505.