-
1
-
-
33644821142
-
Heterotrophic Archaea dominate sedimentary sub-surface ecosystems off Peru
-
Biddle JF, Lipp JS, Lever M, Lloyd K, Sørensen K, Anderson R, Fredricks HF, Elvert M, Kelly TJ, Schrag DP, Sogin ML, Brenchley JE, Teske A, House CH, Hinrichs K-U. 2006. Heterotrophic Archaea dominate sedimentary sub-surface ecosystems off Peru. Proc Natl Acad Sci USA 103:3846-3851.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 3846-3851
-
-
Biddle, J.F.1
Lipp, J.S.2
Lever, M.3
Lloyd, K.4
Sørensen, K.5
Anderson, R.6
Fredricks, H.F.7
Elvert, M.8
Kelly, T.J.9
Schrag, D.P.10
Sogin, M.L.11
Brenchley, J.E.12
Teske, A.13
House14
Hinrichs, K.-U.15
-
3
-
-
0346667170
-
Fluids from aging ocean crust that support microbial life
-
Cowen JP, Giovannoni SJ, Kenig F, Johnson HP, Butterfield D, Rappé MS, Hutnak M, Lam P. 2003. Fluids from aging ocean crust that support microbial life. Science 299:120-123.
-
(2003)
Science
, vol.299
, pp. 120-123
-
-
Cowen, J.P.1
Giovannoni, S.J.2
Kenig, F.3
Johnson, H.P.4
Butterfield, D.5
Rappé, M.S.6
Hutnak, M.7
Lam, P.8
-
4
-
-
0026755238
-
Archaea in coastal marine environments
-
DeLong EF. 1992. Archaea in coastal marine environments. Proc Natl Acad Sci USA 89:5685-5689.
-
(1992)
Proc Natl Acad Sci USA
, vol.89
, pp. 5685-5689
-
-
Delong, E.F.1
-
5
-
-
0013208353
-
Isolation and characterization of novel psychrophilic, neutrophilic, Fe-oxidizing, chemolithoautotrophic α- and γ-Proteobacteria from the deep sea
-
Edwards KJ, Rogers DR, Wirsen CO, McCollom TM. 2003. Isolation and characterization of novel psychrophilic, neutrophilic, Fe-oxidizing, chemolithoautotrophic α- and γ-Proteobacteria from the deep sea. Appl Environ Microbiol. 69:2906-2913.
-
(2003)
Appl Environ Microbiol
, vol.69
, pp. 2906-2913
-
-
Edwards, K.J.1
Rogers, D.R.2
Wirsen, C.O.3
McCollom, T.M.4
-
6
-
-
0032516717
-
Alteration of volcanic glass: Textural evidence of microbial activity
-
Fisk MR, Giovannoni SJ, Thorseth IH. 1998. Alteration of volcanic glass: textural evidence of microbial activity. Science 281:978-980.
-
(1998)
Science
, vol.281
, pp. 978-980
-
-
Fisk, M.R.1
Giovannoni, S.J.2
Thorseth, I.H.3
-
7
-
-
0032710940
-
Quantification of bias related to the extraction of DNA directly from soils
-
Frostegard A, Courtois S, Ramisse V, Clerc S, Bernillon D, Le Gall F, Jeannin P, Nesme X, Simonet P. 1999. Quantification of bias related to the extraction of DNA directly from soils. Appl Environ Microbiol 65:5409-5420.
-
(1999)
Appl Environ Microbiol
, vol.65
, pp. 5409-5420
-
-
Frostegard, A.1
Courtois, S.2
Ramisse, V.3
Clerc, S.4
Bernillon, D.5
Le Gall, F.6
Jeannin, P.7
Nesme, X.8
Simonet, P.9
-
8
-
-
0034468557
-
Rapid method for coextraction of DNA and RNA from natural environments for analysis of robosomal DNA- and rRNA-based microbial community composition
-
Griffiths RI, Whiteley AS, O'Donnell AG, Bailey MJ. 2000. Rapid method for coextraction of DNA and RNA from natural environments for analysis of robosomal DNA- and rRNA-based microbial community composition. Appl Environ Microbiol 66:5488-5491.
-
(2000)
Appl Environ Microbiol
, vol.66
, pp. 5488-5491
-
-
Griffiths, R.I.1
Whiteley, A.S.2
O'donnell, A.G.3
Bailey, M.J.4
-
9
-
-
22144441403
-
Empirical establishment of oligonu-cleotide probe design criteria
-
He Z, Wu L, Li X, Fields M, Zhou J. 2005. Empirical establishment of oligonu-cleotide probe design criteria. Appl Environ Microbiol 71: 3753-3760.
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 3753-3760
-
-
He, Z.1
Wu, L.2
Li, X.3
Fields, M.4
Zhou, J.5
-
10
-
-
34250730303
-
Exploring microbial diversity in volcanic environments: A review of methods in DNA extraction
-
Herrera A, Cockell CS. 2007. Exploring microbial diversity in volcanic environments: A review of methods in DNA extraction. J Microbiol Meth 70:1-12.
-
(2007)
J Microbiol Meth
, vol.70
, pp. 1-12
-
-
Herrera, A.1
Cockell, C.S.2
-
11
-
-
12244307376
-
An improved DNA extraction method using skim milk from soils that strongly adsorb DNA
-
Hoshino YT, Matsumoto N. 2004. An improved DNA extraction method using skim milk from soils that strongly adsorb DNA. Microb Environ 19:13-19.
-
(2004)
Microb Environ
, vol.19
, pp. 13-19
-
-
Hoshino, Y.T.1
Matsumoto, N.2
-
12
-
-
33750070635
-
Skim milk drastically improves the efficiency of DNA extraction from andisol, a volcanic soil
-
Hoshino YT, Matsumoto N. 2005. Skim milk drastically improves the efficiency of DNA extraction from andisol, a volcanic soil. JPN Agr Res Quarterly 39:247-252.
-
(2005)
JPN Agr Res Quarterly
, vol.39
, pp. 247-252
-
-
Hoshino, Y.T.1
Matsumoto, N.2
-
13
-
-
0032935779
-
Marinobacter aquaeolei sp. nov., a halophilic bacterium isolated from a Vietnamese oil-producing well
-
Huu NB, Denner EB, Ha DT, Wanner G, Stan-Lotter H. 1999. Marinobacter aquaeolei sp. nov., a halophilic bacterium isolated from a Vietnamese oil-producing well. Intl J Syst Bacteriol 49:367-375.
-
(1999)
Intl J Syst Bacteriol
, vol.49
, pp. 367-375
-
-
Huu, N.B.1
Denner, E.B.2
Ha, D.T.3
Wanner, G.4
Stan-Lotter, H.5
-
14
-
-
33644505436
-
Biogeographical distribution and diversity of microbes in methane hydrate-bearing deep marine sediments on the Pacific Ocean Margin
-
Inagaki F, Nunoura T, Nakagawa S, Teske A, Ever M, Lauer A, Suzuki M, Takai K, Delwiche M, Colwell FS, Nealson KH, Horikoshi K, D'Hondt S, Jorgensen BB. 2006. Biogeographical distribution and diversity of microbes in methane hydrate-bearing deep marine sediments on the Pacific Ocean Margin. Proc Natl Acad Sci USA 103:2815-2820.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 2815-2820
-
-
Inagaki, F.1
Nunoura, T.2
Nakagawa, S.3
Teske, A.4
Ever, M.5
Lauer, A.6
Suzuki, M.7
Takai, K.8
Delwiche, M.9
Colwell, F.S.10
Nealson, K.H.11
Horikoshi, K.12
D'hondt, S.13
Jorgensen, B.B.14
-
15
-
-
0035945618
-
Achaeal dominance in the mesopelagic zone of the Pacific Ocean
-
Karner MB, De Long EF, Karl DM. 2001. Achaeal dominance in the mesopelagic zone of the Pacific Ocean. Nature 409:507-510.
-
(2001)
Nature
, vol.409
, pp. 507-510
-
-
Karner, M.B.1
de Long, E.F.2
Karl, D.M.3
-
16
-
-
0031842281
-
Small-scale DNA sample preparation method for field PCR detection of microbial cells and spores in soil
-
Kuske CR, Banton KL, Adorada DL, Stark PC, Hill KK, Jackson PJ. 1998. Small-scale DNA sample preparation method for field PCR detection of microbial cells and spores in soil. Appl Environ Microbiol 64:2463-2472.
-
(1998)
Appl Environ Microbiol
, vol.64
, pp. 2463-2472
-
-
Kuske, C.R.1
Banton, K.L.2
Adorada, D.L.3
Stark, P.C.4
Hill, K.K.5
Jackson, P.J.6
-
17
-
-
50049107012
-
Significant contribution of Archaea to extant biomass in marine subsurface sediments
-
Lipp JS, Morono Y, Inagaki F, Hinrichs K-U. 2008. Significant contribution of Archaea to extant biomass in marine subsurface sediments. Nature 454:991-994.
-
(2008)
Nature
, vol.454
, pp. 991-994
-
-
Lipp, J.S.1
Morono, Y.2
Inagaki, F.3
Hinrichs, K.-U.4
-
18
-
-
8144231038
-
Microbial community diversity in seafloor basalt from the Arctic spreading ridges
-
Lysnes K, Thorseth IH, Steinsbu BO, Øreås L, Torsvik T, Pedersen RB. 2004. Microbial community diversity in seafloor basalt from the Arctic spreading ridges. FEMS Microbiol Ecol 50:213-230.
-
(2004)
FEMS Microbiol Ecol
, vol.50
, pp. 213-230
-
-
Lysnes, K.1
Thorseth, I.H.2
Steinsbu, B.O.3
Øreås, L.4
Torsvik, T.5
Pedersen, R.B.6
-
19
-
-
23944458436
-
Direct in situ detection of cells in deep-sea sediment cores from the Peru Margin (ODP Leg 201, Site 1229)
-
Mauclaire, L, Zepp, K, Meister, P, McKenzie J. 2004. Direct in situ detection of cells in deep-sea sediment cores from the Peru Margin (ODP Leg 201, Site 1229). Geobiology 2:217-223.
-
(2004)
Geobiology
, vol.2
, pp. 217-223
-
-
Mauclaire, L.1
Zepp, K.2
Meister, P.3
McKenzie, J.4
-
20
-
-
0032703237
-
Evaluation and opti-mization of DNA extraction and purification procedures for soil and sediment samples
-
Miller DN, Bryant JE, Madsen EL, Ghiorse WC. 1999. Evaluation and opti-mization of DNA extraction and purification procedures for soil and sediment samples. Appl Environ Microbiol 65:4715-4724.
-
(1999)
Appl Environ Microbiol
, vol.65
, pp. 4715-4724
-
-
Miller, D.N.1
Bryant, J.E.2
Madsen, E.L.3
Ghiorse, W.C.4
-
21
-
-
0028269319
-
Quantitative cell lysis of indifenous microorganisms and rapid extraction of microbial DNA from sediment
-
More MI, Herrich JB, Silva MC, Ghiorse WC, Madsen EL. 1994, Quantitative cell lysis of indifenous microorganisms and rapid extraction of microbial DNA from sediment. Appl Environ Microbiol 60:1572-1580.
-
(1994)
Appl Environ Microbiol
, vol.60
, pp. 1572-1580
-
-
More, M.I.1
Herrich, J.B.2
Silva, M.C.3
Ghiorse, W.C.4
Madsen, E.L.5
-
22
-
-
1842509857
-
Convenient determination of DNA extraction efficiency using an external DNA recovery standard and quantitative-competitive PCR
-
Mumy KL, Findlay RH.2004, Convenient determination of DNA extraction efficiency using an external DNA recovery standard and quantitative-competitive PCR. J Micro Meth 57:259-268.
-
(2004)
J Micro Meth
, vol.57
, pp. 259-268
-
-
Mumy, K.L.1
Findlay, R.H.2
-
23
-
-
0028057740
-
Effects of DNA polymer length on its adsorption to soils
-
Ogram AV, Mathot ML, Harsh JB, Boyle J, Pettigrew CA. 1994. Effects of DNA polymer length on its adsorption to soils. Appl Environ Microbiol 60:393-396.
-
(1994)
Appl Environ Microbiol
, vol.60
, pp. 393-396
-
-
Ogram, A.V.1
Mathot, M.L.2
Harsh, J.B.3
Boyle, J.4
Pettigrew, C.A.5
-
24
-
-
0028840589
-
Halobaculum gomorrense gen. nov., sp. nov., a novel extremely halophilic Archaeon from the Dead Sea
-
Oren A, Gurevich P, Gemmell RE, Teske A. 1995. Halobaculum gomorrense gen. nov., sp. nov., a novel extremely halophilic Archaeon from the Dead Sea. Int J Syst Bacteriol 45:747-754.
-
(1995)
Int J Syst Bacteriol
, vol.45
, pp. 747-754
-
-
Oren, A.1
Gurevich, P.2
Gemmell, R.E.3
Teske, A.4
-
25
-
-
0029759760
-
Rapid extraction of DNA and rRNA from sediments by a novel hydroxyapatite spin-column method
-
Purdy KJ, Embley TM, Takii S, Nedwell DB. 1996. Rapid extraction of DNA and rRNA from sediments by a novel hydroxyapatite spin-column method. Appl Environ Microbiol 62:3905-3907.
-
(1996)
Appl Environ Microbiol
, vol.62
, pp. 3905-3907
-
-
Purdy, K.J.1
Embley, T.M.2
Takii, S.3
Nedwell, D.B.4
-
26
-
-
0028019502
-
Effect of sample handling on estimation of bacterial diversity in marine sediments by 16S rDNA gene sequence analysis
-
Rochelle PA, Cragg BA, Fry JC, Parkes RJ, Weightman AJ. 1994. Effect of sample handling on estimation of bacterial diversity in marine sediments by 16S rDNA gene sequence analysis. FEMS Microbiol Ecol 15:215-226.
-
(1994)
FEMS Microbiol Ecol
, vol.15
, pp. 215-226
-
-
Rochelle, P.A.1
Cragg, B.A.2
Fry, J.C.3
Parkes, R.J.4
Weightman, A.J.5
-
27
-
-
44449094057
-
Abundance and diversity of microbial life in ocean crust
-
Santelle CM, Orcutt BN, Banning Bach EW, Moyer CL, Sogin ML, Staudigel H, Edwards KJ. 2008. Abundance and diversity of microbial life in ocean crust. Nature 453:653-656.
-
(2008)
Nature
, vol.453
, pp. 653-656
-
-
Santelle, C.M.1
Orcutt, B.N.2
Banning Bach, E.W.3
Moyer, C.L.4
Sogin, M.L.5
Staudigel, H.6
Edwards, K.J.7
-
28
-
-
14544290535
-
Prokaryotic cells of the deep sub-seafloor biosphere identified as living bacteria
-
Schippers A, et al. 2005. Prokaryotic cells of the deep sub-seafloor biosphere identified as living bacteria. Nature 433:861-864.
-
(2005)
Nature
, vol.433
, pp. 861-864
-
-
Schippers, A.1
-
30
-
-
0035708175
-
Diversity of life in ocean floor basalt
-
Kekdysh-98 Scientific Party
-
Thoresth IH, Torsvik T, Torsvik V, Daae FL, Pedersen RB, Kekdysh-98 Scientific Party. 2001. Diversity of life in ocean floor basalt. Earth Planet Sci Lett 194:31-37.
-
(2001)
Earth Planet Sci Lett
, vol.194
, pp. 31-37
-
-
Thoresth, I.H.1
Torsvik, T.2
Torsvik, V.3
Daae, F.L.4
Pedersen, R.B.5
-
31
-
-
0026597527
-
Detection of low numbers of bacterial cells in soils and sediments by polymerase chain reaction
-
Tsai YL, Olson BH. 1992. Detection of low numbers of bacterial cells in soils and sediments by polymerase chain reaction. Appl Environ Microbiol 61:754-757.
-
(1992)
Appl Environ Microbiol
, vol.61
, pp. 754-757
-
-
Tsai, Y.L.1
Olson, B.H.2
-
32
-
-
0028842856
-
Direct DNA extraction fro PCR-mediated assays of soil organisms
-
Volossiouk T, Robb EJ, Zazar RN. 1995. Direct DNA extraction fro PCR-mediated assays of soil organisms. Appl Environ Microbiol 61:3972-3976.
-
(1995)
Appl Environ Microbiol
, vol.61
, pp. 3972-3976
-
-
Volossiouk, T.1
Robb, E.J.2
Zazar, R.N.3
-
33
-
-
0030579516
-
DNA recovery and PCR quantification of catechol 2,3-dioxygenase genes from different soil types
-
Wikstrom KP, Wiklund A, Anderson A, Forsman M. 1996. DNA recovery and PCR quantification of catechol 2,3-dioxygenase genes from different soil types. J Biotechnol 52:107-120.
-
(1996)
J Biotechnol
, vol.52
, pp. 107-120
-
-
Wikstrom, K.P.1
Wiklund, A.2
Anderson, A.3
Forsman, M.4
-
34
-
-
0030070838
-
DNA recovery from soils of diverse composition
-
Zhou J, Bruns MA, Tiedje JM. 1996. DNA recovery from soils of diverse composition. J Biotechnol 62:316-322.
-
(1996)
J Biotechnol
, vol.62
, pp. 316-322
-
-
Zhou, J.1
Bruns, M.A.2
Tiedje, J.M.3
|