메뉴 건너뛰기




Volumn 39, Issue 4, 2005, Pages 247-252

Skim milk drastically improves the efficacy of DNA extraction from andisol, a volcanic ash soil

Author keywords

Environmental DNA; Microbial community analysis; Molecular methods; Unculturable microorganisms

Indexed keywords


EID: 33750070635     PISSN: 00213551     EISSN: 00213551     Source Type: Journal    
DOI: 10.6090/jarq.39.247     Document Type: Review
Times cited : (33)

References (29)
  • 1
    • 0028946084 scopus 로고
    • Phylogenetic identification and in situ detection of individual microbial cells without cultivation
    • Amann, R. I., Ludwig, W. & Schleifer, K. H. (1995) Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol Rev., 59, 143-169.
    • (1995) Microbiol. Rev. , vol.59 , pp. 143-169
    • Amann, R.I.1    Ludwig, W.2    Schleifer, K.H.3
  • 2
    • 0030011823 scopus 로고    scopus 로고
    • Molecular microbial diversity of an agricultural soil in Wisconsin
    • Borneman, J. et al. (1996) Molecular microbial diversity of an agricultural soil in Wisconsin. Appl. Environ. Microbiol., 62, 1935-1943.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 1935-1943
    • Borneman, J.1
  • 3
    • 0032710940 scopus 로고    scopus 로고
    • Quantification of bias related to the extraction of DNA directly from soils
    • Frostegård, Å. et al. (1999) Quantification of bias related to the extraction of DNA directly from soils. Appl. Environ. Microbiol., 65, 5409-5420.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 5409-5420
    • Frostegård, Å.1
  • 4
    • 0344417112 scopus 로고    scopus 로고
    • A simple PCR-based method for the detection of the chickpea-wilt pathogen Fusarium oxysporum f. sp. ciceris in artificial and natural soils
    • Garcia-Pedrajas, M. D. et al. (1999) A simple PCR-based method for the detection of the chickpea-wilt pathogen Fusarium oxysporum f. sp. ciceris in artificial and natural soils. Eur. J. Plant Pathol., 105, 251-259.
    • (1999) Eur. J. Plant Pathol. , vol.105 , pp. 251-259
    • Garcia-Pedrajas, M.D.1
  • 5
    • 0032192790 scopus 로고    scopus 로고
    • Molecular biological access to the chemistry of unknown soil microbes: A new frontier for natural products
    • Handelsman, J. et al. (1998) Molecular biological access to the chemistry of unknown soil microbes: a new frontier for natural products. Chem. Biol., 5, 245-249.
    • (1998) Chem. Biol. , vol.5 , pp. 245-249
    • Handelsman, J.1
  • 6
    • 0031982528 scopus 로고    scopus 로고
    • Microbial evolution, diversity, and ecology: A decade of ribosomal RNA analysis of uncultivated microorganisms
    • Head, I. M., Saunders, J. R. & Pickup, R. W. (1998) Microbial evolution, diversity, and ecology: a decade of ribosomal RNA analysis of uncultivated microorganisms. Microb. Ecol., 35, 1-21.
    • (1998) Microb. Ecol. , vol.35 , pp. 1-21
    • Head, I.M.1    Saunders, J.R.2    Pickup, R.W.3
  • 7
    • 12244307376 scopus 로고    scopus 로고
    • An improved DNA extraction method using skim milk from soils that strongly adsorb DNA
    • Hoshino, Y. T. & Matsumoto, N. (2004) An improved DNA extraction method using skim milk from soils that strongly adsorb DNA. Microbes Environ., 19, 13-19.
    • (2004) Microbes Environ. , vol.19 , pp. 13-19
    • Hoshino, Y.T.1    Matsumoto, N.2
  • 8
    • 0035487188 scopus 로고    scopus 로고
    • Simultaneous recovery of RNA and DNA from soils and sediments
    • Hurt, R. A. et al. (2001) Simultaneous recovery of RNA and DNA from soils and sediments. Appl. Environ. Microbiol., 67, 4495-4503.
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 4495-4503
    • Hurt, R.A.1
  • 9
    • 0035432220 scopus 로고    scopus 로고
    • Optimization of annealing temperature to reduce bias caused by a primer mismatch in multitemplate PCR
    • Ishii, K. & Fukui, M. (2001) Optimization of annealing temperature to reduce bias caused by a primer mismatch in multitemplate PCR. Appl. Environ. Microbiol., 67, 3753-3755.
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 3753-3755
    • Ishii, K.1    Fukui, M.2
  • 10
    • 25444468249 scopus 로고    scopus 로고
    • Refined PCR protocol for detection of plant pathogens in soil
    • Kageyama, K., Komatsu, T. & Suga, H. (2003) Refined PCR protocol for detection of plant pathogens in soil. J. Gen. Plant Pathol., 69 , 153-160.
    • (2003) J. Gen. Plant Pathol. , vol.69 , pp. 153-160
    • Kageyama, K.1    Komatsu, T.2    Suga, H.3
  • 11
    • 0029475680 scopus 로고
    • Soil microbial diversity and the sustainability of agricultural soils
    • Kennedy, A. C. & Smith, K. L. (1995) Soil microbial diversity and the sustainability of agricultural soils. Plant and Soil, 170, 75-86.
    • (1995) Plant and Soil , vol.170 , pp. 75-86
    • Kennedy, A.C.1    Smith, K.L.2
  • 12
    • 0031842281 scopus 로고    scopus 로고
    • Small-scale DNA sample preparation method for field PCR detection of microbial cells and spores in soil
    • Kuske, C. R. et al. (1998) Small-scale DNA sample preparation method for field PCR detection of microbial cells and spores in soil. Appl. Environ. Microbiol., 64, 2463-2472.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 2463-2472
    • Kuske, C.R.1
  • 13
    • 0036203424 scopus 로고    scopus 로고
    • Comparison of soil bacterial communities in rhizospheres of three plant species and the interspaces in an arid grassland
    • Kuske, C. R. et al. (2002) Comparison of soil bacterial communities in rhizospheres of three plant species and the interspaces in an arid grassland. Appl. Environ. Microbiol., 68, 1854-1863.
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 1854-1863
    • Kuske, C.R.1
  • 14
    • 0029786831 scopus 로고    scopus 로고
    • Nonradioactive method to study genetic profiles of natural bacterial communities by PCR-single-strand-conformation polymorphism
    • Lee, D., Zo, Y. & Kim, S. (1996) Nonradioactive method to study genetic profiles of natural bacterial communities by PCR-single-strand- conformation polymorphism. Appl. Environ. Microbiol., 62, 3112-3120.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 3112-3120
    • Lee, D.1    Zo, Y.2    Kim, S.3
  • 15
    • 0028912711 scopus 로고
    • Comparison of methods of DNA extraction from stream sediments
    • Leff, L. et al. (1995) Comparison of methods of DNA extraction from stream sediments. Appl. Environ. Microbiol., 61, 1141-1143.
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 1141-1143
    • Leff, L.1
  • 16
    • 0030661563 scopus 로고    scopus 로고
    • Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA
    • Liu, W. et al. (1997) Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA. Appl. Environ. Microbiol., 63, 4516-4522.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 4516-4522
    • Liu, W.1
  • 17
    • 0032703237 scopus 로고    scopus 로고
    • Evaluation and optimization of DNA extraction and purification procedures for soil and sediment samples
    • Miller, D. N. et al. (1999) Evaluation and optimization of DNA extraction and purification procedures for soil and sediment samples. Appl. Environ. Microbiol., 65, 4715-4724.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 4715-4724
    • Miller, D.N.1
  • 18
    • 0028269319 scopus 로고
    • Quantitative cell lysis of indigenous microorganisms and rapid extraction of microbial DNA from sediment
    • More, M. I. et al. (1994) Quantitative cell lysis of indigenous microorganisms and rapid extraction of microbial DNA from sediment. Appl. Environ. Microbiol., 60, 1572-1580.
    • (1994) Appl. Environ. Microbiol. , vol.60 , pp. 1572-1580
    • More, M.I.1
  • 19
    • 0027460328 scopus 로고
    • Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
    • Muyzer, G., de Waal, E. & Uitterlinden, A. (1993) Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl. Environ. Microbiol., 59, 695-700.
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 695-700
    • Muyzer, G.1    De Waal, E.2    Uitterlinden, A.3
  • 20
    • 12744281935 scopus 로고
    • The extraction and purification of microbial DNA from sediments
    • Ogram, A., Sayler, G. S. & Barkay, T. (1987) The extraction and purification of microbial DNA from sediments. J. Microbiol. Methods, 7, 57-66.
    • (1987) J. Microbiol. Methods , vol.7 , pp. 57-66
    • Ogram, A.1    Sayler, G.S.2    Barkay, T.3
  • 21
    • 2342470766 scopus 로고    scopus 로고
    • Extraction of DNA from soil
    • Robe, P. et al. (2003) Extraction of DNA from soil. Eur. J. Soil Biol., 39, 183-190.
    • (2003) Eur. J. Soil Biol. , vol.39 , pp. 183-190
    • Robe, P.1
  • 22
    • 0037224331 scopus 로고    scopus 로고
    • Direct extraction of DNA from soils for studies in microbial ecology
    • Schneegurt, M. A., Dore, S. Y. & Kulpa, C. F. Jr. (2003) Direct extraction of DNA from soils for studies in microbial ecology. Curr. Issues Mol. Biol., 5, 1-8.
    • (2003) Curr. Issues Mol. Biol. , vol.5 , pp. 1-8
    • Schneegurt, M.A.1    Dore, S.Y.2    Kulpa Jr., C.F.3
  • 23
    • 0034035471 scopus 로고    scopus 로고
    • Molecular techniques for determining microbial diversity and community structure in natural environments
    • Theron, J. & Cloete, T. E. (2000) Molecular techniques for determining microbial diversity and community structure in natural environments. Crit. Rev. Microbiol., 26, 37-57.
    • (2000) Crit. Rev. Microbiol. , vol.26 , pp. 37-57
    • Theron, J.1    Cloete, T.E.2
  • 24
    • 0032832253 scopus 로고    scopus 로고
    • Opening the black box of soil microbial diversity
    • Tiedje, J. M. et al. (1999) Opening the black box of soil microbial diversity. Appl. Soil Ecol., 13, 109-122.
    • (1999) Appl. Soil Ecol. , vol.13 , pp. 109-122
    • Tiedje, J.M.1
  • 25
    • 0032977102 scopus 로고    scopus 로고
    • Methods for DNA extraction from various soils: A comparison
    • Tien, C. C., Chao, C. C. & Chao, W. L. (1999) Methods for DNA extraction from various soils: a comparison. J. Appl. Microbiol., 86, 937-943.
    • (1999) J. Appl. Microbiol. , vol.86 , pp. 937-943
    • Tien, C.C.1    Chao, C.C.2    Chao, W.L.3
  • 26
    • 0001894963 scopus 로고
    • Isolation of bacterial DNA from soil
    • Torsvik, V. L. (1980) Isolation of bacterial DNA from soil. Soil. Biol. Biochem., 12, 15-21.
    • (1980) Soil. Biol. Biochem. , vol.12 , pp. 15-21
    • Torsvik, V.L.1
  • 27
    • 0026597527 scopus 로고
    • Detection of low numbers of bacterial cells in soils and sediments by polymerase chain reaction
    • Tsai, Y. -L. & Olson, B. H. (1992) Detection of low numbers of bacterial cells in soils and sediments by polymerase chain reaction. Appl. Environ. Microbiol., 58, 754-757.
    • (1992) Appl. Environ. Microbiol. , vol.58 , pp. 754-757
    • Tsai, Y.L.1    Olson, B.H.2
  • 28
    • 0028842856 scopus 로고
    • Direct DNA extraction for PCR-mediated assays of soil organisms
    • Volossiouk, T., Robb, E. & Nazar, R. (1995) Direct DNA extraction for PCR-mediated assays of soil organisms. Appl. Environ. Microbiol., 61, 3972-3976.
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 3972-3976
    • Volossiouk, T.1    Robb, E.2    Nazar, R.3
  • 29


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.