메뉴 건너뛰기




Volumn 453, Issue 7195, 2008, Pages 653-656

Abundance and diversity of microbial life in ocean crust

Author keywords

[No Author keywords available]

Indexed keywords

RIBOSOME RNA; SEA WATER;

EID: 44449094057     PISSN: 00280836     EISSN: 14764687     Source Type: Journal    
DOI: 10.1038/nature06899     Document Type: Article
Times cited : (305)

References (37)
  • 1
    • 0142156526 scopus 로고    scopus 로고
    • Iron and sulfide oxidation within the basaltic ocean crust: Implications for chemolithoautotrophic microbial biomass production
    • Bach, W. & Edwards, K. J. Iron and sulfide oxidation within the basaltic ocean crust: Implications for chemolithoautotrophic microbial biomass production. Geochim. Cosmochim. Acta 67, 3871-3887 (2003).
    • (2003) Geochim. Cosmochim. Acta , vol.67 , pp. 3871-3887
    • Bach, W.1    Edwards, K.J.2
  • 2
    • 0013208353 scopus 로고    scopus 로고
    • Isolation and characterization of novel psychrophilic, neutrophilic, Fe-oxidizing, chemolithoautotrophic α- and γ-Proteobacteria from the deep sea
    • Edwards, K. J., Rogers, D. R., Wirsen, C. O. & McCollom, T. M. Isolation and characterization of novel psychrophilic, neutrophilic, Fe-oxidizing, chemolithoautotrophic α- and γ-Proteobacteria from the deep sea. Appl. Environ. Microbiol. 69, 2906-2913 (2003).
    • (2003) Appl. Environ. Microbiol , vol.69 , pp. 2906-2913
    • Edwards, K.J.1    Rogers, D.R.2    Wirsen, C.O.3    McCollom, T.M.4
  • 3
    • 0035945618 scopus 로고    scopus 로고
    • Archaeal dominance in the mesopelagic zone of the Pacific Ocean
    • Karner, M. B., DeLong, E. F. & Karl, D. M. Archaeal dominance in the mesopelagic zone of the Pacific Ocean. Nature 409, 507-510 (2001).
    • (2001) Nature , vol.409 , pp. 507-510
    • Karner, M.B.1    DeLong, E.F.2    Karl, D.M.3
  • 4
    • 0346667170 scopus 로고    scopus 로고
    • Fluids from aging ocean crust that support microbial life
    • Cowen, J. P. et al. Fluids from aging ocean crust that support microbial life. Science 299, 120-123 (2003).
    • (2003) Science , vol.299 , pp. 120-123
    • Cowen, J.P.1
  • 5
    • 33645454369 scopus 로고    scopus 로고
    • Bacterial and archaeal phylotypes associated with distinct mineralogical layers of a white smoker spire from a deep-sea hydrothermal vent site (9° N, East Pacific Rise)
    • Kormas, K. A., Tivey, M. K., Von Damm, K. & Teske, A. Bacterial and archaeal phylotypes associated with distinct mineralogical layers of a white smoker spire from a deep-sea hydrothermal vent site (9° N, East Pacific Rise). Environ. Microbiol. 8, 909-920 (2006).
    • (2006) Environ. Microbiol , vol.8 , pp. 909-920
    • Kormas, K.A.1    Tivey, M.K.2    Von Damm, K.3    Teske, A.4
  • 6
    • 11144354360 scopus 로고    scopus 로고
    • Environmental genome shotgun sequencing of the Sargasso Sea
    • Venter, J. C. et al. Environmental genome shotgun sequencing of the Sargasso Sea. Science 304, 66-74 (2004).
    • (2004) Science , vol.304 , pp. 66-74
    • Venter, J.C.1
  • 7
    • 0033823565 scopus 로고    scopus 로고
    • Novel bacterial and archaeal lineages from an in situ growth chamber deployed at a mid-atlantic ridge hydrothermal vent
    • Reysenbach, A.-L., Longnecker, K. & Kirshtein, J. Novel bacterial and archaeal lineages from an in situ growth chamber deployed at a mid-atlantic ridge hydrothermal vent. Appl. Environ. Microbiol. 66, 3798-3806 (2000).
    • (2000) Appl. Environ. Microbiol , vol.66 , pp. 3798-3806
    • Reysenbach, A.-L.1    Longnecker, K.2    Kirshtein, J.3
  • 8
    • 0038107871 scopus 로고    scopus 로고
    • Molecular analysis of deep subsurface microbial communities in Nankai Trough sediments (ODP Leg 190, Site 1176)
    • Kormas, K. A., Smith, D. C., Edgcomb, V. & Teske, A. Molecular analysis of deep subsurface microbial communities in Nankai Trough sediments (ODP Leg 190, Site 1176). FEMS Microbiol. Ecol. 45, 115-125 (2003).
    • (2003) FEMS Microbiol. Ecol , vol.45 , pp. 115-125
    • Kormas, K.A.1    Smith, D.C.2    Edgcomb, V.3    Teske, A.4
  • 9
    • 20244376755 scopus 로고    scopus 로고
    • Comparative metagenomics of microbial communities
    • Tringe, S. G. et al. Comparative metagenomics of microbial communities. Science 308, 554-557 (2005).
    • (2005) Science , vol.308 , pp. 554-557
    • Tringe, S.G.1
  • 10
    • 33646584137 scopus 로고    scopus 로고
    • Unexpected diversity and complexity of the Guerrero Negro hypersaline microbial mat
    • Ley, R. E. et al. Unexpected diversity and complexity of the Guerrero Negro hypersaline microbial mat. Appl. Environ. Microbiol. 72, 3685-3695 (2006).
    • (2006) Appl. Environ. Microbiol , vol.72 , pp. 3685-3695
    • Ley, R.E.1
  • 12
    • 0035487318 scopus 로고    scopus 로고
    • Counting the uncountable: Statistical approaches to estimating microbial diversity
    • Hughes, J., Hellmann, J., Ricketts, T. & Bohannan, B. Counting the uncountable: statistical approaches to estimating microbial diversity. Environ. Microbiol. 67, 4399-4406 (2001).
    • (2001) Environ. Microbiol , vol.67 , pp. 4399-4406
    • Hughes, J.1    Hellmann, J.2    Ricketts, T.3    Bohannan, B.4
  • 13
    • 27644566746 scopus 로고    scopus 로고
    • The application of rarefaction techniques to molecular inventories of microbial diversity
    • Hughes, J. B. & Hellmann, J. J. The application of rarefaction techniques to molecular inventories of microbial diversity. Methods Enzymol. 397, 292-308 (2005).
    • (2005) Methods Enzymol , vol.397 , pp. 292-308
    • Hughes, J.B.1    Hellmann, J.J.2
  • 14
    • 0037375056 scopus 로고    scopus 로고
    • Bacterial diversity in a subseafloor habitat following a deep-sea volcanic eruption
    • Huber, J. A., Butterfield, D. A. & Baross, J. A. Bacterial diversity in a subseafloor habitat following a deep-sea volcanic eruption. FEMS Microbiol. Ecol. 43, 393-409 (2003).
    • (2003) FEMS Microbiol. Ecol , vol.43 , pp. 393-409
    • Huber, J.A.1    Butterfield, D.A.2    Baross, J.A.3
  • 16
    • 35148888609 scopus 로고    scopus 로고
    • Microbial population structure in the deep marine biosphere
    • Huber, J. A. et al. Microbial population structure in the deep marine biosphere. Science 318, 97-100 (2007).
    • (2007) Science , vol.318 , pp. 97-100
    • Huber, J.A.1
  • 17
    • 23944436358 scopus 로고    scopus 로고
    • Geomicrobiology in oceanography: Mineral-microbe interactions at and below the seafloor
    • Edwards, K. J., Bach, W. & McCollom, T. M. Geomicrobiology in oceanography: mineral-microbe interactions at and below the seafloor. Trends Microbiol. 13, 449-459 (2005).
    • (2005) Trends Microbiol , vol.13 , pp. 449-459
    • Edwards, K.J.1    Bach, W.2    McCollom, T.M.3
  • 19
    • 0014423317 scopus 로고
    • Dissolved organic carbon from deep waters resists microbial oxidation
    • Barber, R. T. Dissolved organic carbon from deep waters resists microbial oxidation. Nature 220, 274-275 (1968).
    • (1968) Nature , vol.220 , pp. 274-275
    • Barber, R.T.1
  • 21
    • 33644821142 scopus 로고    scopus 로고
    • Heterotrophic archaea dominate sedimentary subsurface ecosystems of Peru
    • Biddle, J. F. et al. Heterotrophic archaea dominate sedimentary subsurface ecosystems of Peru. Proc. Natl Acad. Sci. USA 103, 3846-3851 (2006).
    • (2006) Proc. Natl Acad. Sci. USA , vol.103 , pp. 3846-3851
    • Biddle, J.F.1
  • 22
    • 4644228088 scopus 로고    scopus 로고
    • Geomicrobiology of deep-sea deposits: Estimating community diversity from low-temperature seafloor rocks and minerals
    • Rogers, D. R., Santelli, C. M. & Edwards, K. J. Geomicrobiology of deep-sea deposits: estimating community diversity from low-temperature seafloor rocks and minerals. Geobiology 1, 109-117 (2003).
    • (2003) Geobiology , vol.1 , pp. 109-117
    • Rogers, D.R.1    Santelli, C.M.2    Edwards, K.J.3
  • 23
    • 0037251969 scopus 로고    scopus 로고
    • The Ribosomal Database Project (RDP-II): Previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy
    • Cole, J. R. et al. The Ribosomal Database Project (RDP-II): previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy. Nucleic Acids Res. 31, 442-443 (2003).
    • (2003) Nucleic Acids Res , vol.31 , pp. 442-443
    • Cole, J.R.1
  • 24
    • 15444362001 scopus 로고    scopus 로고
    • Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness
    • Schloss, P. D. & Handelsman, J. Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness. Appl. Environ. Microbiol. 71, 1501-1506 (2005).
    • (2005) Appl. Environ. Microbiol , vol.71 , pp. 1501-1506
    • Schloss, P.D.1    Handelsman, J.2
  • 25
    • 33750078701 scopus 로고    scopus 로고
    • Introducing SONS, a tool for OTU-based comparisons of membership and structure between microbial communities
    • Schloss, P. D. & Handelsman, J. Introducing SONS, a tool for OTU-based comparisons of membership and structure between microbial communities. Appl. Environ. Microbiol. 72, 6773-6779 (2006).
    • (2006) Appl. Environ. Microbiol , vol.72 , pp. 6773-6779
    • Schloss, P.D.1    Handelsman, J.2
  • 26
    • 0344172842 scopus 로고    scopus 로고
    • Probe EUB338 is insufficient for the detection of all bacteria: Development and evaluation of a more comprehensive probe set
    • Daims, H., Bruhl, A., Amann, R., Schleifer, K.-H. & Wagner, M. Probe EUB338 is insufficient for the detection of all bacteria: development and evaluation of a more comprehensive probe set. Syst. Appl. Microbiol. 22, 438-448 (1999).
    • (1999) Syst. Appl. Microbiol , vol.22 , pp. 438-448
    • Daims, H.1    Bruhl, A.2    Amann, R.3    Schleifer, K.-H.4    Wagner, M.5
  • 27
    • 0028165830 scopus 로고
    • Group-specific 16S rRNA hybridization probes to describe natural communities of methanogens
    • Raskin, L., Stromley, J., Rittmann, B. E. & Stahl, D. A. Group-specific 16S rRNA hybridization probes to describe natural communities of methanogens. Appl. Environ. Microbiol. 60, 1232-1240 (1994).
    • (1994) Appl. Environ. Microbiol , vol.60 , pp. 1232-1240
    • Raskin, L.1    Stromley, J.2    Rittmann, B.E.3    Stahl, D.A.4
  • 28
    • 0036146824 scopus 로고    scopus 로고
    • Determination of bacterial load by real-time PCR using a broad range (universal) probe and primer set
    • Nadkarni, M., Martin, F. E., Jacques, N. A. & Hunter, N. Determination of bacterial load by real-time PCR using a broad range (universal) probe and primer set. Microbiology 148, 257-266 (2002).
    • (2002) Microbiology , vol.148 , pp. 257-266
    • Nadkarni, M.1    Martin, F.E.2    Jacques, N.A.3    Hunter, N.4
  • 29
    • 0033766069 scopus 로고    scopus 로고
    • Rapid detection and quantification of members of the archaeal community by quantitative PCR using fluorogenic probes
    • Takai, K. & Horikoshi, K. Rapid detection and quantification of members of the archaeal community by quantitative PCR using fluorogenic probes. Appl. Environ. Microbiol. 66, 5066-5072 (2000).
    • (2000) Appl. Environ. Microbiol , vol.66 , pp. 5066-5072
    • Takai, K.1    Horikoshi, K.2
  • 31
    • 0142091782 scopus 로고    scopus 로고
    • Assessment of bacterial community structure in the deep sub-seafloor biosphere by 16S rDNA-based techniques: A cautionary tale
    • Webster, G., Newberry, C. J., Fry, J. C. & Weightman, A. J. Assessment of bacterial community structure in the deep sub-seafloor biosphere by 16S rDNA-based techniques: a cautionary tale. J. Microbiol. Methods 55, 155-164 (2003).
    • (2003) J. Microbiol. Methods , vol.55 , pp. 155-164
    • Webster, G.1    Newberry, C.J.2    Fry, J.C.3    Weightman, A.J.4
  • 32
    • 5044240973 scopus 로고    scopus 로고
    • Bellerophon: A program to detect chimeric sequences in multiple sequence alignments
    • Huber, T., Faulkner, G. & Hugenholtz, P. Bellerophon: a program to detect chimeric sequences in multiple sequence alignments. Bioinformatics 20, 2317-2319 (2004).
    • (2004) Bioinformatics , vol.20 , pp. 2317-2319
    • Huber, T.1    Faulkner, G.2    Hugenholtz, P.3
  • 33
    • 33748799671 scopus 로고    scopus 로고
    • New screening software shows that most recent large 16S rRNA gene clone libraries contain chimeras
    • Ashelford, K. E., Chuzhanova, N. A., Fry, J. C., Jones, A. J. & Weightman, A. J. New screening software shows that most recent large 16S rRNA gene clone libraries contain chimeras. Appl. Environ. Microbiol. 72, 5734-5741 (2006).
    • (2006) Appl. Environ. Microbiol , vol.72 , pp. 5734-5741
    • Ashelford, K.E.1    Chuzhanova, N.A.2    Fry, J.C.3    Jones, A.J.4    Weightman, A.J.5
  • 34
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-blast: A new generation of protein database search programs
    • Altschul, S. F. et al. Gapped BLAST and PSI-blast: a new generation of protein database search programs. Nucleic Acids Res. 25, 3389-3402 (1997).
    • (1997) Nucleic Acids Res , vol.25 , pp. 3389-3402
    • Altschul, S.F.1
  • 35
    • 84945500355 scopus 로고    scopus 로고
    • Davis, R. E. & Moyer, C. L. Extreme spatial variability in microbial mat communities from submarine hydrothermal vents located at multiple volcanoes along the Mariana Island. Eos. Trans. AGU 86, Fall Meet. Suppl. Abstract V51C-1509 (2005).
    • Davis, R. E. & Moyer, C. L. Extreme spatial variability in microbial mat communities from submarine hydrothermal vents located at multiple volcanoes along the Mariana Island. Eos. Trans. AGU 86, Fall Meet. Suppl. Abstract V51C-1509 (2005).
  • 36
    • 0036276618 scopus 로고    scopus 로고
    • Fluorescence in situ hybridization and catalyzed reporter deposition for the identification of marine bacteria
    • Pernthaler, A., Pernthaler, J. & Amann, R. Fluorescence in situ hybridization and catalyzed reporter deposition for the identification of marine bacteria. Appl. Environ. Microbiol. 68, 3094-3101 (2002).
    • (2002) Appl. Environ. Microbiol , vol.68 , pp. 3094-3101
    • Pernthaler, A.1    Pernthaler, J.2    Amann, R.3
  • 37
    • 0037882329 scopus 로고    scopus 로고
    • An improved protocol for quantification of freshwater Actinobacteria by fluorescence in situ hybridization
    • Sekar, R. et al. An improved protocol for quantification of freshwater Actinobacteria by fluorescence in situ hybridization. Appl. Environ. Microbiol. 69, 2928-2935 (2003).
    • (2003) Appl. Environ. Microbiol , vol.69 , pp. 2928-2935
    • Sekar, R.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.